Wall clock time and date at job start Tue Mar 31 2020 17:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47012 * 2 1 4 4 H 1.08996 * 109.47064 * 305.69126 * 3 2 1 5 5 C 1.50703 * 109.47081 * 185.68870 * 3 2 1 6 6 H 1.07997 * 120.00042 * 275.00847 * 5 3 2 7 7 C 1.37879 * 119.99515 * 95.00268 * 5 3 2 8 8 N 1.31522 * 119.99458 * 184.82745 * 7 5 3 9 9 Si 1.86794 * 120.00148 * 4.83424 * 7 5 3 10 10 H 1.48498 * 109.47316 * 84.85716 * 9 7 5 11 11 H 1.48504 * 109.47080 * 204.85524 * 9 7 5 12 12 H 1.48494 * 109.47509 * 324.85543 * 9 7 5 13 13 N 1.46497 * 109.46823 * 65.69346 * 3 2 1 14 14 C 1.34780 * 119.99499 * 274.99562 * 13 3 2 15 15 O 1.21718 * 120.00675 * 0.02562 * 14 13 3 16 16 C 1.46262 * 119.99677 * 180.02562 * 14 13 3 17 17 C 1.34982 * 120.00048 * 180.02562 * 16 14 13 18 18 C 1.46994 * 119.99856 * 179.97438 * 17 16 14 19 19 C 1.39973 * 120.11499 * 359.72656 * 18 17 16 20 20 C 1.37670 * 119.88088 * 179.71802 * 19 18 17 21 21 C 1.39018 * 120.11407 * 0.57620 * 20 19 18 22 22 O 1.35738 * 119.88189 * 179.69676 * 21 20 19 23 23 C 1.42895 * 117.00297 * 359.97438 * 22 21 20 24 24 C 1.50699 * 109.47407 * 179.97438 * 23 22 21 25 25 N 1.34773 * 120.00353 * 180.02562 * 24 23 22 26 26 O 1.21281 * 119.99839 * 0.02562 * 24 23 22 27 27 C 1.39018 * 120.22834 * 359.67543 * 21 20 19 28 28 C 1.37659 * 120.11654 * 0.04473 * 27 21 20 29 29 H 1.08999 * 109.47192 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46918 * 60.00097 * 1 2 3 31 31 H 1.08993 * 109.47551 * 300.00173 * 1 2 3 32 32 H 1.09000 * 109.46918 * 119.99903 * 2 1 3 33 33 H 1.08997 * 109.47171 * 240.00140 * 2 1 3 34 34 H 0.96994 * 119.99378 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00512 * 95.00210 * 13 3 2 36 36 H 1.08001 * 119.99969 * 359.97438 * 16 14 13 37 37 H 1.08003 * 119.99846 * 359.97438 * 17 16 14 38 38 H 1.07994 * 120.05691 * 359.97299 * 19 18 17 39 39 H 1.08004 * 119.93988 * 180.27194 * 20 19 18 40 40 H 1.09000 * 109.47242 * 300.00176 * 23 22 21 41 41 H 1.09001 * 109.47063 * 60.00317 * 23 22 21 42 42 H 0.97006 * 119.99943 * 359.97438 * 25 24 23 43 43 H 0.96998 * 120.00463 * 180.02562 * 25 24 23 44 44 H 1.08002 * 119.94123 * 180.02562 * 27 21 20 45 45 H 1.07996 * 120.06089 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5404 1.4449 -0.1408 6 1 4.1650 1.3334 0.7331 7 6 4.1157 1.5894 -1.3855 8 7 5.4205 1.4965 -1.5216 9 14 3.0419 1.9171 -2.8784 10 1 2.7754 3.3740 -2.9863 11 1 3.7403 1.4497 -4.1028 12 1 1.7563 1.1883 -2.7332 13 7 1.6667 2.0924 1.2588 14 6 0.4508 2.6588 1.3900 15 8 -0.3374 2.6301 0.4629 16 6 0.0782 3.3081 2.6465 17 6 -1.1397 3.8749 2.7782 18 6 -1.5142 4.5270 4.0412 19 6 -0.6119 4.5565 5.1109 20 6 -0.9656 5.1735 6.2897 21 6 -2.2207 5.7562 6.4227 22 8 -2.5667 6.3579 7.5892 23 6 -1.5930 6.3540 8.6350 24 6 -2.1503 7.0621 9.8430 25 7 -1.4032 7.1818 10.9582 26 8 -3.2712 7.5242 9.8115 27 6 -3.1225 5.7250 5.3651 28 6 -2.7766 5.1156 4.1803 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 5.8252 1.5985 -2.3971 35 1 2.2946 2.1151 1.9978 36 1 0.7774 3.3333 3.4693 37 1 -1.8390 3.8494 1.9555 38 1 0.3614 4.0996 5.0102 39 1 -0.2684 5.2007 7.1141 40 1 -1.3465 5.3253 8.8981 41 1 -0.6936 6.8679 8.2960 42 1 -0.5068 6.8119 10.9836 43 1 -1.7620 7.6373 11.7358 44 1 -4.0962 6.1795 5.4734 45 1 -3.4780 5.0915 3.3594 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183875486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:15 Heat of formation + Delta-G solvation = -103.864342 kcal Electronic energy + Delta-G solvation = -26632.617380 eV Core-core repulsion = 22614.397140 eV Total energy + Delta-G solvation = -4018.220240 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.44749 -40.71340 -40.20015 -38.54442 -36.97936 -34.79995 -34.52789 -34.36295 -33.04636 -32.11080 -30.54798 -29.52179 -28.73442 -25.33041 -24.43996 -23.93246 -22.57787 -21.66716 -21.30606 -20.54300 -19.50732 -19.15734 -18.63385 -17.84573 -17.50775 -17.37919 -17.31789 -16.54500 -16.29192 -16.04744 -15.94926 -15.43393 -15.40732 -15.10648 -14.82725 -14.76670 -14.28429 -14.02788 -13.78318 -13.74861 -13.66701 -13.60997 -13.24509 -12.92185 -12.65429 -12.55613 -12.36431 -12.31162 -11.86812 -11.78894 -11.67660 -11.18931 -11.12438 -10.83137 -10.81407 -10.73884 -10.70279 -10.03283 -9.66435 -8.78856 -8.38083 -6.43085 -0.35690 0.39137 1.07448 1.29475 1.33989 1.45017 1.47474 1.68921 2.27855 2.46586 2.59217 2.84206 2.92370 3.05969 3.68322 3.81448 3.88581 3.89975 4.09295 4.12424 4.26289 4.27606 4.33815 4.34543 4.43739 4.44955 4.58928 4.66812 4.85896 5.02309 5.09557 5.12114 5.19992 5.27906 5.28383 5.30512 5.43875 5.52122 5.58972 5.66971 5.71193 5.82712 5.82821 6.17272 6.26053 6.43276 6.62162 7.00333 7.23213 7.24987 7.56094 8.76814 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022739 B = 0.001851 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.067170 B =15123.961827 C =15694.640484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C 0.240 3.760 4 H 0.028 0.972 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.033 3.967 8 N -0.929 5.929 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.278 1.278 12 H -0.256 1.256 13 N -0.698 5.698 14 C 0.528 3.472 15 O -0.596 6.596 16 C -0.214 4.214 17 C -0.015 4.015 18 C -0.121 4.121 19 C -0.061 4.061 20 C -0.206 4.206 21 C 0.130 3.870 22 O -0.316 6.316 23 C 0.030 3.970 24 C 0.516 3.484 25 N -0.826 5.826 26 O -0.585 6.585 27 C -0.165 4.165 28 C -0.058 4.058 29 H 0.056 0.944 30 H 0.031 0.969 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.270 0.730 35 H 0.406 0.594 36 H 0.156 0.844 37 H 0.122 0.878 38 H 0.151 0.849 39 H 0.166 0.834 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.423 0.577 43 H 0.414 0.586 44 H 0.137 0.863 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.685 8.806 25.319 29.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.162 4.162 3 C 0.136 3.864 4 H 0.046 0.954 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.167 4.167 8 N -0.568 5.568 9 Si 0.749 3.251 10 H -0.202 1.202 11 H -0.204 1.204 12 H -0.180 1.180 13 N -0.346 5.346 14 C 0.318 3.682 15 O -0.480 6.480 16 C -0.234 4.234 17 C -0.035 4.035 18 C -0.122 4.122 19 C -0.079 4.079 20 C -0.224 4.224 21 C 0.084 3.916 22 O -0.229 6.229 23 C -0.047 4.047 24 C 0.300 3.700 25 N -0.393 5.393 26 O -0.465 6.465 27 C -0.184 4.184 28 C -0.076 4.076 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.241 0.759 36 H 0.173 0.827 37 H 0.140 0.860 38 H 0.169 0.831 39 H 0.183 0.817 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.256 0.744 43 H 0.246 0.754 44 H 0.155 0.845 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.918 9.087 24.395 29.061 hybrid contribution 0.646 0.144 -0.421 0.785 sum -12.272 9.231 23.974 28.470 Atomic orbital electron populations 1.21768 0.95883 1.00216 1.01190 1.21985 0.94967 0.98021 1.01224 1.18906 0.93215 0.90302 0.83986 0.95363 1.21223 0.90302 1.50201 0.94560 0.92390 1.25580 0.95730 0.94067 1.01332 1.69978 1.11136 1.50477 1.25208 0.86093 0.79994 0.79195 0.79810 1.20179 1.20359 1.18024 1.46247 1.15349 1.55793 1.17251 1.18898 0.81795 0.78599 0.88870 1.90746 1.51877 1.62126 1.43270 1.22966 0.99419 1.03959 0.97092 1.22268 0.95337 0.90665 0.95255 1.19000 0.95808 1.03300 0.94071 1.21518 0.99511 0.95534 0.91330 1.21461 0.96255 1.03963 1.00757 1.19381 0.94010 0.92718 0.85464 1.86080 1.42470 1.73311 1.21061 1.22823 0.92291 1.04168 0.85460 1.20465 0.85077 0.79054 0.85371 1.43502 1.20277 1.60663 1.14810 1.90800 1.21737 1.50018 1.83895 1.20520 1.00769 1.05032 0.92062 1.21355 0.95337 0.93895 0.96963 0.92480 0.94934 0.93080 0.91862 0.93219 0.92103 0.75923 0.82704 0.86003 0.83149 0.81651 0.85473 0.85575 0.74432 0.75368 0.84471 0.83583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 8.53 71.98 0.61 -4.55 16 2 C -0.12 -5.22 5.59 30.60 0.17 -5.04 16 3 C 0.24 11.21 1.89 44.25 0.08 11.29 16 4 H 0.03 1.47 4.73 -2.39 -0.01 1.45 16 5 C -0.52 -28.08 9.05 25.60 0.23 -27.84 16 6 H 0.06 3.28 8.06 -2.91 -0.02 3.25 16 7 C 0.03 1.87 5.47 84.65 0.46 2.33 16 8 N -0.93 -55.09 13.96 21.45 0.30 -54.79 16 9 Si 0.92 44.84 26.99 68.60 1.85 46.69 16 10 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.26 -12.20 6.82 99.48 0.68 -11.52 16 13 N -0.70 -27.05 5.02 -450.47 -2.26 -29.31 16 14 C 0.53 19.44 6.34 86.33 0.55 19.99 16 15 O -0.60 -26.17 13.37 -4.41 -0.06 -26.23 16 16 C -0.21 -5.63 9.41 23.61 0.22 -5.41 16 17 C -0.02 -0.37 9.45 23.82 0.23 -0.14 16 18 C -0.12 -2.40 5.87 -20.14 -0.12 -2.52 16 19 C -0.06 -0.95 9.40 22.56 0.21 -0.74 16 20 C -0.21 -2.62 9.01 22.32 0.20 -2.42 16 21 C 0.13 2.20 6.70 22.64 0.15 2.36 16 22 O -0.32 -5.67 9.66 -71.58 -0.69 -6.36 16 23 C 0.03 0.24 5.21 71.24 0.37 0.61 16 24 C 0.52 6.37 8.18 87.66 0.72 7.08 16 25 N -0.83 -1.93 8.87 -173.54 -1.54 -3.47 16 26 O -0.59 -14.64 17.34 16.00 0.28 -14.36 16 27 C -0.17 -3.02 9.97 22.32 0.22 -2.80 16 28 C -0.06 -1.05 9.79 22.55 0.22 -0.83 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.03 1.35 7.88 -2.39 -0.02 1.33 16 31 H 0.05 1.97 5.63 -2.39 -0.01 1.95 16 32 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.41 13.54 8.57 -92.71 -0.79 12.75 16 36 H 0.16 2.96 6.07 -2.91 -0.02 2.94 16 37 H 0.12 3.25 7.52 -2.91 -0.02 3.23 16 38 H 0.15 1.78 6.16 -2.91 -0.02 1.76 16 39 H 0.17 0.79 6.27 -2.91 -0.02 0.78 16 40 H 0.13 0.21 7.65 -2.39 -0.02 0.20 16 41 H 0.13 0.24 7.65 -2.39 -0.02 0.23 16 42 H 0.42 -2.30 8.83 -92.70 -0.82 -3.12 16 43 H 0.41 0.70 8.93 -92.71 -0.83 -0.13 16 44 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 45 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -82.04 378.87 1.01 -81.04 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -1.40 Total: 15.42 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 4.54 Total: -8.63 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -3.50 Total: -87.57 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: -0.47 Total: -46.94 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.85 Total: 46.69 kcal Total: -82.04 1.01 -81.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183875486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.829 kcal (2) G-P(sol) polarization free energy of solvation -82.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds