Wall clock time and date at job start Tue Mar 31 2020 16:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46977 * 2 1 4 4 C 1.53000 * 109.46962 * 240.00264 * 2 1 3 5 5 C 1.50696 * 109.47179 * 59.99843 * 4 2 1 6 6 N 1.34776 * 119.99692 * 179.97438 * 5 4 2 7 7 O 1.21282 * 120.00068 * 0.02562 * 5 4 2 8 8 N 1.46500 * 109.47270 * 120.00085 * 2 1 3 9 9 C 1.34776 * 119.99784 * 299.99985 * 8 2 1 10 10 O 1.21722 * 120.00532 * 0.02562 * 9 8 2 11 11 C 1.46261 * 119.99815 * 180.27468 * 9 8 2 12 12 C 1.35019 * 120.00171 * 179.72881 * 11 9 8 13 13 C 1.46959 * 120.00209 * 180.02562 * 12 11 9 14 14 C 1.40017 * 120.10027 * 359.71653 * 13 12 11 15 15 C 1.37600 * 119.89871 * 179.76963 * 14 13 12 16 16 C 1.39173 * 120.09945 * 0.50997 * 15 14 13 17 17 O 1.35570 * 119.89967 * 179.76472 * 16 15 14 18 18 C 1.34788 * 117.00091 * 174.42353 * 17 16 15 19 19 H 1.07991 * 119.99907 * 5.05912 * 18 17 16 20 20 C 1.38714 * 119.99689 * 185.05654 * 18 17 16 21 21 N 1.31507 * 120.00463 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99779 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47126 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47456 * 119.99851 * 22 20 18 25 25 H 1.48498 * 109.46880 * 239.99856 * 22 20 18 26 26 C 1.39180 * 120.20294 * 359.74773 * 16 15 14 27 27 C 1.37600 * 120.10236 * 359.97438 * 26 16 15 28 28 H 1.08994 * 109.47179 * 299.99565 * 1 2 3 29 29 H 1.08994 * 109.47523 * 60.00246 * 1 2 3 30 30 H 1.09009 * 109.46895 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46924 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.46793 * 300.00201 * 3 2 1 33 33 H 1.09008 * 109.46843 * 60.00170 * 3 2 1 34 34 H 1.09007 * 109.46873 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47035 * 299.99199 * 4 2 1 36 36 H 0.96999 * 120.00692 * 0.02562 * 6 5 4 37 37 H 0.97008 * 119.99920 * 179.97438 * 6 5 4 38 38 H 0.96999 * 120.00112 * 119.99958 * 8 2 1 39 39 H 1.08000 * 119.99981 * 359.72341 * 11 9 8 40 40 H 1.08000 * 119.99847 * 359.97438 * 12 11 9 41 41 H 1.08005 * 120.04922 * 0.02969 * 14 13 12 42 42 H 1.08005 * 119.95289 * 180.23375 * 15 14 13 43 43 H 0.96998 * 120.00154 * 179.97438 * 21 20 18 44 44 H 1.08007 * 119.94868 * 179.97438 * 26 16 15 45 45 H 1.07997 * 120.05056 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 7 1.8636 -0.4710 -3.7038 7 8 0.8407 0.9756 -2.3684 8 7 2.0184 -0.6906 1.1961 9 6 1.6928 -0.2301 2.4202 10 8 0.9926 0.7592 2.5320 11 6 2.1853 -0.9161 3.6144 12 6 1.8637 -0.4517 4.8408 13 6 2.3590 -1.1406 6.0407 14 6 3.1597 -2.2823 5.9147 15 6 3.6252 -2.9213 7.0409 16 6 3.2924 -2.4406 8.3039 17 8 3.7493 -3.0762 9.4108 18 6 3.4895 -2.4972 10.5999 19 1 2.8708 -1.6133 10.6464 20 6 4.0168 -3.0368 11.7639 21 7 4.7697 -4.1135 11.7074 22 14 3.6561 -2.2349 13.4121 23 1 2.7904 -1.0461 13.2053 24 1 2.9609 -3.2066 14.2939 25 1 4.9307 -1.8140 14.0472 26 6 2.4923 -1.3093 8.4340 27 6 2.0270 -0.6604 7.3134 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9564 0.8901 34 1 3.1300 -0.7208 -1.2495 35 1 1.6767 -1.7489 -1.2492 36 1 2.4213 -1.2596 -3.7929 37 1 1.5399 -0.0139 -4.4958 38 1 2.5760 -1.4793 1.1071 39 1 2.8062 -1.7942 3.5153 40 1 1.2430 0.4266 4.9399 41 1 3.4151 -2.6583 4.9349 42 1 4.2460 -3.7998 6.9447 43 1 5.1388 -4.4906 12.5213 44 1 2.2363 -0.9401 9.4162 45 1 1.4066 0.2176 7.4154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184626187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:38 Heat of formation + Delta-G solvation = -63.232542 kcal Electronic energy + Delta-G solvation = -26749.658295 eV Core-core repulsion = 22733.199982 eV Total energy + Delta-G solvation = -4016.458313 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.71683 -39.45653 -39.10985 -36.97223 -36.10231 -34.18686 -33.21498 -32.38532 -31.79608 -30.42315 -28.56798 -28.01781 -27.25973 -25.69025 -23.79698 -22.28009 -21.86363 -20.73958 -19.69395 -19.31108 -18.21479 -17.61340 -17.35745 -17.05580 -16.93694 -15.72316 -15.50218 -14.97999 -14.82703 -14.79855 -14.47823 -14.21148 -13.88693 -13.86027 -13.79414 -13.51413 -13.30288 -13.03166 -12.58676 -12.11987 -11.95810 -11.93451 -11.83598 -11.70381 -11.66375 -11.28262 -11.23945 -11.13061 -11.03390 -10.64871 -10.52815 -10.25859 -10.04911 -9.57518 -9.48945 -9.41312 -9.07433 -8.84395 -8.37780 -7.10519 -6.65009 -4.19913 1.10107 2.13809 2.17976 2.58526 2.81985 3.03877 3.05161 3.10768 3.49435 3.63096 3.82482 4.20280 4.51517 4.55603 4.58405 4.92489 4.92856 5.02690 5.05111 5.19424 5.29013 5.32377 5.53757 5.61668 5.67960 5.82475 5.88199 5.88711 5.93047 6.01864 6.12714 6.21489 6.41540 6.42572 6.46858 6.53412 6.58469 6.64684 6.79996 6.82693 6.92916 7.13810 7.24405 7.29132 7.63077 7.64549 7.80589 7.82606 8.43520 8.80072 9.47090 10.51752 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.041799 B = 0.001649 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.717548 B =16973.226996 C =17442.524734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.194 3.806 3 C -0.173 4.173 4 C -0.149 4.149 5 C 0.523 3.477 6 N -0.857 5.857 7 O -0.526 6.526 8 N -0.730 5.730 9 C 0.559 3.441 10 O -0.549 6.549 11 C -0.282 4.282 12 C 0.037 3.963 13 C -0.198 4.198 14 C -0.043 4.043 15 C -0.200 4.200 16 C 0.167 3.833 17 O -0.163 6.163 18 C -0.393 4.393 19 H 0.098 0.902 20 C 0.041 3.959 21 N -0.852 5.852 22 Si 0.945 3.055 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.242 4.242 27 C -0.035 4.035 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.401 0.599 37 H 0.402 0.598 38 H 0.396 0.604 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.273 0.727 44 H 0.131 0.869 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.774 3.305 -25.324 25.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.108 3.892 3 C -0.231 4.231 4 C -0.190 4.190 5 C 0.308 3.692 6 N -0.421 5.421 7 O -0.403 6.403 8 N -0.382 5.382 9 C 0.351 3.649 10 O -0.430 6.430 11 C -0.303 4.303 12 C 0.017 3.983 13 C -0.199 4.199 14 C -0.062 4.062 15 C -0.219 4.219 16 C 0.110 3.890 17 O -0.064 6.064 18 C -0.468 4.468 19 H 0.115 0.885 20 C -0.165 4.165 21 N -0.485 5.485 22 Si 0.769 3.231 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.261 4.261 27 C -0.054 4.054 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.230 0.770 37 H 0.233 0.767 38 H 0.230 0.770 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.083 0.917 44 H 0.149 0.851 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.440 4.244 -24.743 25.339 hybrid contribution 0.424 -0.471 0.370 0.734 sum -3.016 3.773 -24.373 24.847 Atomic orbital electron populations 1.22437 0.93713 1.01705 1.05211 1.19874 0.94947 0.92369 0.82058 1.22438 0.99853 0.95568 1.05210 1.21919 1.03034 1.01048 0.92958 1.20320 0.79647 0.84277 0.84990 1.43891 1.56163 1.33948 1.08113 1.90687 1.37250 1.26059 1.86256 1.45996 1.54679 1.32160 1.05368 1.18314 0.79499 0.83733 0.83321 1.90726 1.38652 1.26632 1.86951 1.22464 1.10707 1.05152 0.92000 1.22278 0.90223 0.94674 0.91141 1.18472 1.08591 1.00593 0.92214 1.20874 0.94592 0.93568 0.97135 1.20148 1.07751 1.04156 0.89844 1.19613 0.91071 0.90209 0.88086 1.83904 1.65601 1.44599 1.12331 1.21525 1.32362 1.12184 0.80774 0.88486 1.25390 0.95518 0.96147 0.99408 1.70020 1.29579 1.19276 1.29643 0.85584 0.78689 0.79005 0.79842 1.18856 1.19927 1.19921 1.21108 1.05797 0.99885 0.99327 1.20995 0.95782 0.97213 0.91389 0.90313 0.89585 0.93686 0.93679 0.89584 0.90311 0.88153 0.88156 0.77045 0.76717 0.77000 0.86036 0.85927 0.86442 0.86162 0.91667 0.85127 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 8.10 37.16 0.30 -1.72 16 2 C 0.19 1.92 0.80 -131.82 -0.11 1.81 16 3 C -0.17 -2.03 8.10 37.16 0.30 -1.73 16 4 C -0.15 -0.87 4.88 -27.89 -0.14 -1.00 16 5 C 0.52 3.70 7.51 -10.99 -0.08 3.62 16 6 N -0.86 -2.74 8.87 31.22 0.28 -2.46 16 7 O -0.53 -5.89 12.18 5.56 0.07 -5.82 16 8 N -0.73 -7.30 5.10 -49.03 -0.25 -7.55 16 9 C 0.56 7.66 7.15 -13.04 -0.09 7.57 16 10 O -0.55 -9.30 12.43 5.17 0.06 -9.24 16 11 C -0.28 -3.78 9.41 -37.50 -0.35 -4.13 16 12 C 0.04 0.55 9.45 -37.19 -0.35 0.20 16 13 C -0.20 -3.36 5.87 -105.03 -0.62 -3.98 16 14 C -0.04 -0.73 9.40 -39.15 -0.37 -1.10 16 15 C -0.20 -3.97 9.97 -39.47 -0.39 -4.36 16 16 C 0.17 3.82 6.66 -38.88 -0.26 3.56 16 17 O -0.16 -4.43 9.74 0.72 0.01 -4.42 16 18 C -0.39 -10.44 9.48 30.91 0.29 -10.15 16 19 H 0.10 2.38 5.18 -52.49 -0.27 2.11 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 21 N -0.85 -23.82 13.67 55.48 0.76 -23.06 16 22 Si 0.94 19.54 29.55 -169.99 -5.02 14.52 16 23 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 C -0.24 -5.02 9.14 -39.46 -0.36 -5.38 16 27 C -0.04 -0.63 9.78 -39.15 -0.38 -1.02 16 28 H 0.08 1.14 6.16 -51.93 -0.32 0.82 16 29 H 0.09 1.05 5.51 -51.93 -0.29 0.77 16 30 H 0.04 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.09 1.05 5.51 -51.93 -0.29 0.77 16 33 H 0.08 1.14 6.16 -51.92 -0.32 0.82 16 34 H 0.10 0.39 8.14 -51.92 -0.42 -0.04 16 35 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.40 0.09 8.83 -40.82 -0.36 -0.27 16 37 H 0.40 1.07 8.93 -40.82 -0.36 0.70 16 38 H 0.40 2.73 8.45 -40.82 -0.34 2.39 16 39 H 0.12 1.38 6.07 -52.49 -0.32 1.06 16 40 H 0.12 1.86 7.52 -52.49 -0.39 1.47 16 41 H 0.12 1.60 6.16 -52.48 -0.32 1.27 16 42 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 43 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.13 2.69 5.62 -52.48 -0.29 2.39 16 45 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -33.54 371.20 -6.77 -40.30 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.56 Total: 8.94 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -2.70 Total: -16.81 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.79 Total: -33.07 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.14 Total: -19.48 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.54 -6.77 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184626187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.931 kcal (2) G-P(sol) polarization free energy of solvation -33.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds