Wall clock time and date at job start Tue Mar 31 2020 16:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46977 * 2 1 4 4 C 1.53000 * 109.46962 * 240.00264 * 2 1 3 5 5 C 1.50696 * 109.47179 * 59.99843 * 4 2 1 6 6 N 1.34776 * 119.99692 * 179.97438 * 5 4 2 7 7 O 1.21282 * 120.00068 * 0.02562 * 5 4 2 8 8 N 1.46500 * 109.47270 * 120.00085 * 2 1 3 9 9 C 1.34776 * 119.99784 * 299.99985 * 8 2 1 10 10 O 1.21722 * 120.00532 * 0.02562 * 9 8 2 11 11 C 1.46261 * 119.99815 * 180.27468 * 9 8 2 12 12 C 1.35019 * 120.00171 * 179.72881 * 11 9 8 13 13 C 1.46959 * 120.00209 * 180.02562 * 12 11 9 14 14 C 1.40017 * 120.10027 * 359.71653 * 13 12 11 15 15 C 1.37600 * 119.89871 * 179.76963 * 14 13 12 16 16 C 1.39173 * 120.09945 * 0.50997 * 15 14 13 17 17 O 1.35570 * 119.89967 * 179.76472 * 16 15 14 18 18 C 1.34788 * 117.00091 * 174.42353 * 17 16 15 19 19 H 1.07991 * 119.99907 * 5.05912 * 18 17 16 20 20 C 1.38714 * 119.99689 * 185.05654 * 18 17 16 21 21 N 1.31507 * 120.00463 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99779 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47126 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47456 * 119.99851 * 22 20 18 25 25 H 1.48498 * 109.46880 * 239.99856 * 22 20 18 26 26 C 1.39180 * 120.20294 * 359.74773 * 16 15 14 27 27 C 1.37600 * 120.10236 * 359.97438 * 26 16 15 28 28 H 1.08994 * 109.47179 * 299.99565 * 1 2 3 29 29 H 1.08994 * 109.47523 * 60.00246 * 1 2 3 30 30 H 1.09009 * 109.46895 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46924 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.46793 * 300.00201 * 3 2 1 33 33 H 1.09008 * 109.46843 * 60.00170 * 3 2 1 34 34 H 1.09007 * 109.46873 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47035 * 299.99199 * 4 2 1 36 36 H 0.96999 * 120.00692 * 0.02562 * 6 5 4 37 37 H 0.97008 * 119.99920 * 179.97438 * 6 5 4 38 38 H 0.96999 * 120.00112 * 119.99958 * 8 2 1 39 39 H 1.08000 * 119.99981 * 359.72341 * 11 9 8 40 40 H 1.08000 * 119.99847 * 359.97438 * 12 11 9 41 41 H 1.08005 * 120.04922 * 0.02969 * 14 13 12 42 42 H 1.08005 * 119.95289 * 180.23375 * 15 14 13 43 43 H 0.96998 * 120.00154 * 179.97438 * 21 20 18 44 44 H 1.08007 * 119.94868 * 179.97438 * 26 16 15 45 45 H 1.07997 * 120.05056 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 7 1.8636 -0.4710 -3.7038 7 8 0.8407 0.9756 -2.3684 8 7 2.0184 -0.6906 1.1961 9 6 1.6928 -0.2301 2.4202 10 8 0.9926 0.7592 2.5320 11 6 2.1853 -0.9161 3.6144 12 6 1.8637 -0.4517 4.8408 13 6 2.3590 -1.1406 6.0407 14 6 3.1597 -2.2823 5.9147 15 6 3.6252 -2.9213 7.0409 16 6 3.2924 -2.4406 8.3039 17 8 3.7493 -3.0762 9.4108 18 6 3.4895 -2.4972 10.5999 19 1 2.8708 -1.6133 10.6464 20 6 4.0168 -3.0368 11.7639 21 7 4.7697 -4.1135 11.7074 22 14 3.6561 -2.2349 13.4121 23 1 2.7904 -1.0461 13.2053 24 1 2.9609 -3.2066 14.2939 25 1 4.9307 -1.8140 14.0472 26 6 2.4923 -1.3093 8.4340 27 6 2.0270 -0.6604 7.3134 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9564 0.8901 34 1 3.1300 -0.7208 -1.2495 35 1 1.6767 -1.7489 -1.2492 36 1 2.4213 -1.2596 -3.7929 37 1 1.5399 -0.0139 -4.4958 38 1 2.5760 -1.4793 1.1071 39 1 2.8062 -1.7942 3.5153 40 1 1.2430 0.4266 4.9399 41 1 3.4151 -2.6583 4.9349 42 1 4.2460 -3.7998 6.9447 43 1 5.1388 -4.4906 12.5213 44 1 2.2363 -0.9401 9.4162 45 1 1.4066 0.2176 7.4154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184626187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:37 Heat of formation + Delta-G solvation = -88.884775 kcal Electronic energy + Delta-G solvation = -26750.770660 eV Core-core repulsion = 22733.199982 eV Total energy + Delta-G solvation = -4017.570678 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.49466 -40.82812 -40.23196 -38.51902 -37.06330 -34.72064 -34.62913 -34.02249 -32.81712 -31.94714 -29.62477 -29.01402 -28.19470 -27.49957 -25.05160 -23.74732 -22.93961 -21.69043 -20.58376 -20.57383 -19.73124 -18.84085 -18.33447 -17.91084 -17.78281 -16.58811 -16.38420 -16.27156 -16.26373 -15.89804 -15.84015 -15.59937 -15.39585 -15.00080 -14.72374 -14.60266 -14.47882 -14.27021 -14.08778 -13.59641 -13.31713 -13.12856 -12.95669 -12.75888 -12.67730 -12.54019 -12.49685 -12.22603 -12.11001 -12.10526 -12.05427 -11.20091 -11.09368 -10.97470 -10.54908 -10.48464 -10.44382 -10.00918 -9.87685 -8.65593 -8.51787 -6.17801 -0.20340 0.59879 1.17279 1.36151 1.45588 1.53820 1.69888 2.11918 2.15491 2.44553 2.87699 2.90568 3.19324 3.43944 3.55372 3.88823 3.97117 3.97564 4.06252 4.10162 4.31225 4.33579 4.38671 4.49794 4.60937 4.67992 4.68858 4.89426 4.92340 4.96605 5.02330 5.03850 5.04899 5.21300 5.29178 5.36289 5.44009 5.45044 5.60779 5.65190 5.68687 5.84276 5.98315 6.01917 6.12261 6.53542 6.75275 6.92888 7.40919 7.46116 7.70173 8.70456 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.041799 B = 0.001649 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.717548 B =16973.226996 C =17442.524734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.191 3.809 3 C -0.167 4.167 4 C -0.140 4.140 5 C 0.517 3.483 6 N -0.837 5.837 7 O -0.577 6.577 8 N -0.708 5.708 9 C 0.550 3.450 10 O -0.583 6.583 11 C -0.240 4.240 12 C 0.009 3.991 13 C -0.168 4.168 14 C -0.037 4.037 15 C -0.206 4.206 16 C 0.128 3.872 17 O -0.220 6.220 18 C -0.417 4.417 19 H 0.105 0.895 20 C -0.018 4.018 21 N -0.913 5.913 22 Si 1.018 2.982 23 H -0.252 1.252 24 H -0.268 1.268 25 H -0.268 1.268 26 C -0.249 4.249 27 C -0.043 4.043 28 H 0.044 0.956 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.044 0.956 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.419 0.581 37 H 0.406 0.594 38 H 0.417 0.583 39 H 0.155 0.845 40 H 0.121 0.879 41 H 0.163 0.837 42 H 0.124 0.876 43 H 0.275 0.725 44 H 0.123 0.877 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.689 3.235 -29.046 29.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.105 3.895 3 C -0.225 4.225 4 C -0.180 4.180 5 C 0.302 3.698 6 N -0.401 5.401 7 O -0.457 6.457 8 N -0.360 5.360 9 C 0.341 3.659 10 O -0.466 6.466 11 C -0.261 4.261 12 C -0.011 4.011 13 C -0.169 4.169 14 C -0.055 4.055 15 C -0.225 4.225 16 C 0.076 3.924 17 O -0.125 6.125 18 C -0.492 4.492 19 H 0.122 0.878 20 C -0.216 4.216 21 N -0.550 5.550 22 Si 0.837 3.163 23 H -0.175 1.175 24 H -0.193 1.193 25 H -0.193 1.193 26 C -0.268 4.268 27 C -0.061 4.061 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.250 0.750 37 H 0.238 0.762 38 H 0.255 0.745 39 H 0.172 0.828 40 H 0.138 0.862 41 H 0.181 0.819 42 H 0.142 0.858 43 H 0.084 0.916 44 H 0.140 0.860 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.340 4.145 -28.582 29.073 hybrid contribution 0.248 -0.268 0.821 0.899 sum -3.092 3.877 -27.761 28.200 Atomic orbital electron populations 1.22345 0.95287 1.01791 1.03110 1.19881 0.93822 0.92040 0.83771 1.22346 1.00447 0.96638 1.03109 1.21880 1.04762 1.01555 0.89839 1.20592 0.79135 0.83756 0.86273 1.43732 1.55213 1.34048 1.07132 1.90683 1.39710 1.28344 1.86981 1.45807 1.53692 1.32267 1.04250 1.18496 0.79402 0.83451 0.84546 1.90753 1.40059 1.28194 1.87561 1.22824 1.07722 1.04409 0.91127 1.22140 0.92300 0.95633 0.90986 1.18788 1.06001 0.99529 0.92573 1.21297 0.93356 0.92792 0.98027 1.20438 1.07837 1.04539 0.89669 1.20197 0.92218 0.91527 0.88422 1.83884 1.68786 1.46660 1.13197 1.21925 1.33031 1.12805 0.81473 0.87818 1.26580 0.95225 0.96695 1.03145 1.70148 1.32495 1.21739 1.30639 0.84535 0.78779 0.78304 0.74664 1.17537 1.19280 1.19303 1.21192 1.05823 0.99680 1.00144 1.21307 0.95944 0.97931 0.90961 0.93736 0.90365 0.92413 0.92422 0.90362 0.93736 0.85139 0.85126 0.74966 0.76234 0.74503 0.82772 0.86151 0.81944 0.85783 0.91608 0.85951 0.84114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 8.10 71.98 0.58 -3.08 16 2 C 0.19 3.20 0.80 3.60 0.00 3.20 16 3 C -0.17 -3.67 8.10 71.98 0.58 -3.09 16 4 C -0.14 -0.97 4.88 29.85 0.15 -0.82 16 5 C 0.52 5.72 7.51 87.66 0.66 6.38 16 6 N -0.84 -2.37 8.87 -173.54 -1.54 -3.91 16 7 O -0.58 -12.19 12.18 -3.03 -0.04 -12.23 16 8 N -0.71 -10.96 5.10 -427.23 -2.18 -13.14 16 9 C 0.55 13.11 7.15 86.33 0.62 13.72 16 10 O -0.58 -18.88 12.43 -4.42 -0.05 -18.94 16 11 C -0.24 -5.24 9.41 23.62 0.22 -5.02 16 12 C 0.01 0.25 9.45 23.82 0.23 0.47 16 13 C -0.17 -5.20 5.87 -20.13 -0.12 -5.32 16 14 C -0.04 -1.13 9.40 22.55 0.21 -0.92 16 15 C -0.21 -8.07 9.97 22.34 0.22 -7.85 16 16 C 0.13 6.10 6.66 22.72 0.15 6.25 16 17 O -0.22 -12.73 9.74 -20.34 -0.20 -12.93 16 18 C -0.42 -23.50 9.48 67.93 0.64 -22.86 16 19 H 0.10 5.38 5.18 -2.92 -0.02 5.37 16 20 C -0.02 -0.98 5.49 84.86 0.47 -0.51 16 21 N -0.91 -54.26 13.67 21.62 0.30 -53.96 16 22 Si 1.02 41.66 29.55 68.60 2.03 43.69 16 23 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 24 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 25 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 26 C -0.25 -10.53 9.14 22.35 0.20 -10.33 16 27 C -0.04 -1.49 9.78 22.55 0.22 -1.27 16 28 H 0.04 1.28 6.16 -2.39 -0.01 1.26 16 29 H 0.08 1.87 5.51 -2.39 -0.01 1.86 16 30 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.88 5.51 -2.39 -0.01 1.86 16 33 H 0.04 1.28 6.16 -2.38 -0.01 1.27 16 34 H 0.13 0.19 8.14 -2.38 -0.02 0.17 16 35 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.42 -1.71 8.83 -92.71 -0.82 -2.53 16 37 H 0.41 1.01 8.93 -92.70 -0.83 0.18 16 38 H 0.42 3.12 8.45 -92.71 -0.78 2.33 16 39 H 0.15 2.37 6.07 -2.91 -0.02 2.35 16 40 H 0.12 3.36 7.52 -2.91 -0.02 3.34 16 41 H 0.16 3.42 6.16 -2.91 -0.02 3.41 16 42 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 43 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 44 H 0.12 5.27 5.62 -2.91 -0.02 5.25 16 45 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -81.83 371.20 2.01 -79.83 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -1.35 Total: 22.63 kcal Atomic # 6 Polarization: -36.08 SS G_CDS: 5.04 Total: -31.04 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -3.42 Total: -71.01 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -0.29 Total: -44.10 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -81.83 2.01 -79.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184626187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.058 kcal (2) G-P(sol) polarization free energy of solvation -81.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds