Wall clock time and date at job start Tue Mar 31 2020 17:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.46839 * 2 1 4 4 H 1.09002 * 109.47311 * 55.00024 * 3 2 1 5 5 C 1.50701 * 109.46962 * 175.00203 * 3 2 1 6 6 H 1.08000 * 119.99955 * 120.00150 * 5 3 2 7 7 C 1.37875 * 119.99959 * 299.99775 * 5 3 2 8 8 N 1.31513 * 119.99751 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99941 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47335 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47206 * 120.00429 * 9 7 5 12 12 H 1.48505 * 109.47013 * 240.00041 * 9 7 5 13 13 O 1.45203 * 109.47188 * 295.00212 * 3 2 1 14 14 C 1.34759 * 117.00270 * 89.99872 * 13 3 2 15 15 O 1.21520 * 119.99949 * 0.02562 * 14 13 3 16 16 C 1.47386 * 120.00144 * 180.02562 * 14 13 3 17 17 C 1.39830 * 120.06367 * 0.02562 * 16 14 13 18 18 C 1.37695 * 120.10973 * 180.48110 * 17 16 14 19 19 C 1.39043 * 120.13324 * 359.83240 * 18 17 16 20 20 C 1.39809 * 119.99496 * 359.32146 * 19 18 17 21 21 C 1.38051 * 120.11073 * 1.20223 * 20 19 18 22 22 N 1.40326 * 119.61177 * 181.85825 * 20 19 18 23 23 C 1.34861 * 118.35049 * 48.83736 * 22 20 19 24 24 O 1.21302 * 120.29668 * 183.63393 * 23 22 20 25 25 C 1.50578 * 119.40605 * 3.65300 * 23 22 20 26 26 C 1.52550 * 110.31978 * 283.73319 * 25 23 22 27 27 N 1.39018 * 120.26874 * 179.03693 * 19 18 17 28 28 C 1.46903 * 110.99648 * 337.47801 * 27 19 18 29 29 H 1.08999 * 109.46610 * 299.99994 * 1 2 3 30 30 H 1.08997 * 109.47241 * 60.00221 * 1 2 3 31 31 H 1.08997 * 109.46689 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46610 * 240.00006 * 2 1 3 33 33 H 1.08997 * 109.47241 * 119.99778 * 2 1 3 34 34 H 0.97006 * 119.99714 * 179.97438 * 8 7 5 35 35 H 1.07998 * 119.94971 * 0.42719 * 17 16 14 36 36 H 1.08008 * 119.93266 * 179.91183 * 18 17 16 37 37 H 1.07993 * 120.11698 * 179.15627 * 21 20 19 38 38 H 0.96999 * 120.82183 * 228.80849 * 22 20 19 39 39 H 1.09001 * 109.33449 * 163.46601 * 25 23 22 40 40 H 1.09002 * 109.32373 * 43.98727 * 25 23 22 41 41 H 1.09006 * 109.27016 * 283.56479 * 26 25 23 42 42 H 1.08993 * 109.27459 * 164.09168 * 26 25 23 43 43 H 1.09000 * 109.47014 * 66.53477 * 28 27 19 44 44 H 1.09003 * 109.46519 * 186.53143 * 28 27 19 45 45 H 1.08998 * 109.47289 * 306.53161 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8890 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 3.4063 0.3367 2.1728 9 14 6.0050 0.8801 1.3810 10 1 6.5988 1.5453 0.1935 11 1 6.4001 1.6157 2.6090 12 1 6.4962 -0.5190 1.4625 13 8 1.6558 2.0917 -1.2407 14 6 0.4680 2.7279 -1.2560 15 8 -0.2276 2.7402 -0.2597 16 6 0.0124 3.4088 -2.4812 17 6 0.8114 3.3950 -3.6287 18 6 0.3912 4.0391 -4.7708 19 6 -0.8305 4.7027 -4.7886 20 6 -1.6414 4.7047 -3.6497 21 6 -1.2203 4.0697 -2.4985 22 7 -2.8902 5.3436 -3.6888 23 6 -3.7153 5.0743 -4.7211 24 8 -4.7748 5.6556 -4.8253 25 6 -3.3095 4.0454 -5.7429 26 6 -2.2585 4.6216 -6.6865 27 7 -1.2484 5.3709 -5.9338 28 6 -0.1046 5.7171 -6.7881 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8294 -0.0617 2.9494 35 1 1.7601 2.8790 -3.6189 36 1 1.0113 4.0279 -5.6551 37 1 -1.8405 4.0828 -1.6146 38 1 -3.1536 5.9631 -2.9905 39 1 -4.1847 3.7438 -6.3185 40 1 -2.8981 3.1740 -5.2335 41 1 -2.7427 5.2881 -7.4004 42 1 -1.7746 3.8077 -7.2262 43 1 0.3461 4.8049 -7.1791 44 1 -0.4450 6.3382 -7.6167 45 1 0.6335 6.2651 -6.2026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187920064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:28 Heat of formation + Delta-G solvation = -83.521753 kcal Electronic energy + Delta-G solvation = -28772.582984 eV Core-core repulsion = 24755.244865 eV Total energy + Delta-G solvation = -4017.338120 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.51423 -39.73659 -38.84163 -37.17041 -35.75722 -35.24717 -33.53549 -32.15337 -31.39100 -30.37259 -29.57677 -27.38575 -26.30180 -25.25230 -23.42262 -22.69050 -22.28490 -20.90531 -20.36431 -19.54379 -18.22613 -17.41205 -16.92920 -16.78179 -16.47148 -16.17401 -15.82726 -15.39584 -15.30782 -14.67869 -14.57313 -14.48562 -14.21692 -13.84475 -13.42133 -13.27081 -12.90921 -12.83165 -12.62042 -12.36990 -12.14360 -12.07852 -11.83966 -11.57557 -11.49920 -11.31544 -11.21417 -11.00856 -10.69130 -10.51271 -10.31731 -10.18846 -9.88080 -9.74052 -9.71693 -9.42463 -8.86928 -8.84474 -8.50034 -8.14470 -6.22624 -4.29836 0.59307 1.03455 2.29945 2.82622 2.90093 3.20487 3.21435 3.27563 3.31644 3.57750 3.77664 4.14588 4.29379 4.32918 4.51676 4.60819 4.77658 4.92035 4.96059 5.09385 5.11856 5.13546 5.16138 5.23918 5.33350 5.39156 5.44809 5.60367 5.85446 6.02974 6.19699 6.24175 6.27758 6.34139 6.37470 6.42881 6.52898 6.80060 6.83424 6.92367 7.03613 7.12598 7.18886 7.57157 7.69082 7.88196 7.88759 8.10631 8.55555 8.82905 9.35533 10.84180 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.002812 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.991133 B = 9956.071154 C =10753.212634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.521 4.521 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.349 6.349 14 C 0.496 3.504 15 O -0.511 6.511 16 C -0.106 4.106 17 C -0.046 4.046 18 C -0.158 4.158 19 C 0.111 3.889 20 C 0.117 3.883 21 C -0.057 4.057 22 N -0.660 5.660 23 C 0.539 3.461 24 O -0.537 6.537 25 C -0.151 4.151 26 C 0.071 3.929 27 N -0.508 5.508 28 C 0.023 3.977 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.042 0.958 33 H 0.109 0.891 34 H 0.266 0.734 35 H 0.148 0.852 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.412 0.588 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.059 0.941 43 H 0.043 0.957 44 H 0.077 0.923 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.925 6.817 -17.941 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.559 4.559 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.265 6.265 14 C 0.340 3.660 15 O -0.402 6.402 16 C -0.108 4.108 17 C -0.065 4.065 18 C -0.179 4.179 19 C 0.012 3.988 20 C 0.021 3.979 21 C -0.078 4.078 22 N -0.309 5.309 23 C 0.327 3.673 24 O -0.413 6.413 25 C -0.192 4.192 26 C -0.054 4.054 27 N -0.226 5.226 28 C -0.123 4.123 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.165 0.835 36 H 0.156 0.844 37 H 0.164 0.836 38 H 0.252 0.748 39 H 0.130 0.870 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.096 0.904 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.896 7.344 -17.569 21.018 hybrid contribution 1.265 -0.486 0.434 1.423 sum -7.632 6.858 -17.135 19.972 Atomic orbital electron populations 1.21865 0.98366 0.99062 1.00758 1.22028 0.92643 0.99289 1.03420 1.20727 0.95073 0.88756 0.78454 0.93394 1.21062 0.89569 1.38998 1.06292 0.91240 1.24884 0.99246 0.94752 0.95064 1.69898 1.35319 1.37760 1.09484 0.86235 0.83873 0.77887 0.78242 1.19474 1.20760 1.20715 1.86528 1.33398 1.62336 1.44279 1.20753 0.81202 0.76969 0.87082 1.90799 1.55565 1.58625 1.35184 1.19277 0.95581 1.02256 0.93700 1.21499 0.99325 0.95001 0.90684 1.21337 0.97605 0.99288 0.99682 1.18863 0.93775 0.94355 0.91759 1.17159 0.87276 0.99891 0.93528 1.21061 0.95418 0.93415 0.97868 1.43464 1.14826 1.45714 1.26877 1.20369 0.82902 0.82525 0.81541 1.90757 1.23594 1.51915 1.75036 1.21839 1.01584 0.98285 0.97454 1.22039 0.91272 0.96995 0.95101 1.58558 1.14301 1.43190 1.06518 1.22528 0.92028 1.00713 0.97079 0.92785 0.94958 0.94784 0.93927 0.87282 0.92400 0.83465 0.84407 0.83621 0.74824 0.86983 0.88857 0.89001 0.92253 0.93897 0.90438 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.56 37.16 0.32 -2.74 16 2 C -0.14 -3.26 5.49 -26.73 -0.15 -3.41 16 3 C 0.22 5.68 2.25 -27.88 -0.06 5.62 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.06 8.90 -34.44 -0.31 -14.37 16 6 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 7 C 0.06 1.67 5.29 -17.82 -0.09 1.58 16 8 N -0.89 -24.45 11.29 55.43 0.63 -23.82 16 9 Si 0.91 20.47 29.54 -169.99 -5.02 15.45 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 13 O -0.35 -7.82 9.04 -40.65 -0.37 -8.18 16 14 C 0.50 9.89 6.34 34.45 0.22 10.11 16 15 O -0.51 -11.34 13.53 -19.28 -0.26 -11.60 16 16 C -0.11 -1.60 5.88 -104.96 -0.62 -2.22 16 17 C -0.05 -0.58 9.60 -39.18 -0.38 -0.95 16 18 C -0.16 -1.56 8.94 -39.48 -0.35 -1.92 16 19 C 0.11 1.13 4.73 -83.72 -0.40 0.74 16 20 C 0.12 1.32 5.40 -83.45 -0.45 0.87 16 21 C -0.06 -0.75 9.51 -39.04 -0.37 -1.12 16 22 N -0.66 -7.21 5.34 -9.75 -0.05 -7.27 16 23 C 0.54 6.29 7.04 -11.01 -0.08 6.21 16 24 O -0.54 -8.05 17.96 5.54 0.10 -7.95 16 25 C -0.15 -1.28 5.41 -28.17 -0.15 -1.43 16 26 C 0.07 0.51 5.59 -4.24 -0.02 0.49 16 27 N -0.51 -4.42 4.31 -179.37 -0.77 -5.20 16 28 C 0.02 0.15 8.43 60.07 0.51 0.65 16 29 H 0.05 1.21 7.79 -51.93 -0.40 0.81 16 30 H 0.03 0.66 6.06 -51.93 -0.31 0.34 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.11 2.86 5.95 -51.93 -0.31 2.55 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.15 1.85 7.59 -52.49 -0.40 1.45 16 36 H 0.14 1.02 6.09 -52.48 -0.32 0.70 16 37 H 0.15 1.92 7.65 -52.49 -0.40 1.52 16 38 H 0.41 4.08 8.95 -40.82 -0.37 3.72 16 39 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.78 7.32 -51.93 -0.38 0.40 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.33 8.03 -51.93 -0.42 -0.09 16 43 H 0.04 0.22 6.83 -51.93 -0.35 -0.14 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.53 7.95 -51.93 -0.41 0.11 16 LS Contribution 363.86 15.07 5.48 5.48 Total: -1.00 -31.86 363.86 -8.76 -40.62 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.11 Total: 4.35 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -2.38 Total: -1.88 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: -0.20 Total: -36.28 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.53 Total: -27.74 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.86 -8.76 -40.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187920064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.906 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds