Wall clock time and date at job start Tue Mar 31 2020 17:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.46839 * 2 1 4 4 H 1.09002 * 109.47311 * 55.00024 * 3 2 1 5 5 C 1.50701 * 109.46962 * 175.00203 * 3 2 1 6 6 H 1.08000 * 119.99955 * 120.00150 * 5 3 2 7 7 C 1.37875 * 119.99959 * 299.99775 * 5 3 2 8 8 N 1.31513 * 119.99751 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99941 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47335 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47206 * 120.00429 * 9 7 5 12 12 H 1.48505 * 109.47013 * 240.00041 * 9 7 5 13 13 O 1.45203 * 109.47188 * 295.00212 * 3 2 1 14 14 C 1.34759 * 117.00270 * 89.99872 * 13 3 2 15 15 O 1.21520 * 119.99949 * 0.02562 * 14 13 3 16 16 C 1.47386 * 120.00144 * 180.02562 * 14 13 3 17 17 C 1.39830 * 120.06367 * 0.02562 * 16 14 13 18 18 C 1.37695 * 120.10973 * 180.48110 * 17 16 14 19 19 C 1.39043 * 120.13324 * 359.83240 * 18 17 16 20 20 C 1.39809 * 119.99496 * 359.32146 * 19 18 17 21 21 C 1.38051 * 120.11073 * 1.20223 * 20 19 18 22 22 N 1.40326 * 119.61177 * 181.85825 * 20 19 18 23 23 C 1.34861 * 118.35049 * 48.83736 * 22 20 19 24 24 O 1.21302 * 120.29668 * 183.63393 * 23 22 20 25 25 C 1.50578 * 119.40605 * 3.65300 * 23 22 20 26 26 C 1.52550 * 110.31978 * 283.73319 * 25 23 22 27 27 N 1.39018 * 120.26874 * 179.03693 * 19 18 17 28 28 C 1.46903 * 110.99648 * 337.47801 * 27 19 18 29 29 H 1.08999 * 109.46610 * 299.99994 * 1 2 3 30 30 H 1.08997 * 109.47241 * 60.00221 * 1 2 3 31 31 H 1.08997 * 109.46689 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46610 * 240.00006 * 2 1 3 33 33 H 1.08997 * 109.47241 * 119.99778 * 2 1 3 34 34 H 0.97006 * 119.99714 * 179.97438 * 8 7 5 35 35 H 1.07998 * 119.94971 * 0.42719 * 17 16 14 36 36 H 1.08008 * 119.93266 * 179.91183 * 18 17 16 37 37 H 1.07993 * 120.11698 * 179.15627 * 21 20 19 38 38 H 0.96999 * 120.82183 * 228.80849 * 22 20 19 39 39 H 1.09001 * 109.33449 * 163.46601 * 25 23 22 40 40 H 1.09002 * 109.32373 * 43.98727 * 25 23 22 41 41 H 1.09006 * 109.27016 * 283.56479 * 26 25 23 42 42 H 1.08993 * 109.27459 * 164.09168 * 26 25 23 43 43 H 1.09000 * 109.47014 * 66.53477 * 28 27 19 44 44 H 1.09003 * 109.46519 * 186.53143 * 28 27 19 45 45 H 1.08998 * 109.47289 * 306.53161 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8890 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 3.4063 0.3367 2.1728 9 14 6.0050 0.8801 1.3810 10 1 6.5988 1.5453 0.1935 11 1 6.4001 1.6157 2.6090 12 1 6.4962 -0.5190 1.4625 13 8 1.6558 2.0917 -1.2407 14 6 0.4680 2.7279 -1.2560 15 8 -0.2276 2.7402 -0.2597 16 6 0.0124 3.4088 -2.4812 17 6 0.8114 3.3950 -3.6287 18 6 0.3912 4.0391 -4.7708 19 6 -0.8305 4.7027 -4.7886 20 6 -1.6414 4.7047 -3.6497 21 6 -1.2203 4.0697 -2.4985 22 7 -2.8902 5.3436 -3.6888 23 6 -3.7153 5.0743 -4.7211 24 8 -4.7748 5.6556 -4.8253 25 6 -3.3095 4.0454 -5.7429 26 6 -2.2585 4.6216 -6.6865 27 7 -1.2484 5.3709 -5.9338 28 6 -0.1046 5.7171 -6.7881 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8294 -0.0617 2.9494 35 1 1.7601 2.8790 -3.6189 36 1 1.0113 4.0279 -5.6551 37 1 -1.8405 4.0828 -1.6146 38 1 -3.1536 5.9631 -2.9905 39 1 -4.1847 3.7438 -6.3185 40 1 -2.8981 3.1740 -5.2335 41 1 -2.7427 5.2881 -7.4004 42 1 -1.7746 3.8077 -7.2262 43 1 0.3461 4.8049 -7.1791 44 1 -0.4450 6.3382 -7.6167 45 1 0.6335 6.2651 -6.2026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187920064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:27 Heat of formation + Delta-G solvation = -103.708247 kcal Electronic energy + Delta-G solvation = -28773.458336 eV Core-core repulsion = 24755.244865 eV Total energy + Delta-G solvation = -4018.213472 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.39403 -41.28348 -39.85426 -38.15183 -37.37475 -36.24608 -35.45213 -33.37950 -32.83838 -31.30546 -30.54091 -29.25830 -27.08612 -26.12743 -25.19916 -23.74498 -23.47112 -21.99663 -21.64294 -20.99552 -19.47363 -18.70934 -18.32182 -17.88213 -17.69972 -17.25634 -16.97396 -16.85836 -16.46334 -16.27189 -15.56958 -15.43667 -15.04181 -14.96338 -14.75020 -14.62188 -14.26658 -13.93179 -13.72168 -13.50332 -13.34039 -13.26831 -13.08988 -12.89420 -12.81234 -12.77490 -12.55603 -12.50621 -12.29599 -12.11442 -11.75171 -11.52069 -11.43929 -11.33101 -11.08626 -10.80552 -10.57596 -10.50901 -9.76393 -8.97162 -8.25903 -6.42361 -0.45871 0.09590 1.35808 1.43656 1.43872 1.57041 1.60347 1.86692 2.18011 2.43687 2.51610 2.64047 3.04274 3.34905 3.66745 3.74707 3.84893 3.94661 4.04630 4.12156 4.26207 4.38102 4.40719 4.44678 4.49853 4.54833 4.58379 4.63767 4.74335 4.77517 4.83365 4.92510 5.02647 5.08851 5.10933 5.22393 5.25926 5.38612 5.42132 5.53282 5.61495 5.68519 5.79298 5.97702 6.00436 6.12457 6.19203 6.62677 6.97471 6.99106 7.28975 8.81107 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.002812 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.991133 B = 9956.071154 C =10753.212634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.226 3.774 4 H 0.006 0.994 5 C -0.546 4.546 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.980 3.020 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.273 1.273 13 O -0.353 6.353 14 C 0.492 3.508 15 O -0.544 6.544 16 C -0.134 4.134 17 C -0.040 4.040 18 C -0.143 4.143 19 C 0.132 3.868 20 C 0.115 3.885 21 C -0.055 4.055 22 N -0.659 5.659 23 C 0.534 3.466 24 O -0.576 6.576 25 C -0.150 4.150 26 C 0.072 3.928 27 N -0.522 5.522 28 C 0.018 3.982 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.270 0.730 35 H 0.146 0.854 36 H 0.174 0.826 37 H 0.135 0.865 38 H 0.414 0.586 39 H 0.128 0.872 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.092 0.908 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.993 6.988 -21.311 23.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.024 0.976 5 C -0.584 4.584 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.804 3.196 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.198 1.198 13 O -0.270 6.270 14 C 0.339 3.661 15 O -0.437 6.437 16 C -0.136 4.136 17 C -0.060 4.060 18 C -0.164 4.164 19 C 0.033 3.967 20 C 0.020 3.980 21 C -0.076 4.076 22 N -0.306 5.306 23 C 0.324 3.676 24 O -0.455 6.455 25 C -0.190 4.190 26 C -0.052 4.052 27 N -0.240 5.240 28 C -0.128 4.128 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.164 0.836 36 H 0.191 0.809 37 H 0.153 0.847 38 H 0.253 0.747 39 H 0.146 0.854 40 H 0.114 0.886 41 H 0.122 0.878 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.111 0.889 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.965 7.524 -20.970 23.660 hybrid contribution 0.871 -0.414 1.389 1.691 sum -7.094 7.109 -19.581 22.006 Atomic orbital electron populations 1.21714 0.96449 1.00544 1.00020 1.21869 0.94308 0.98090 1.02464 1.20398 0.94600 0.89239 0.78474 0.97648 1.21355 0.90374 1.39746 1.06886 0.91297 1.25796 1.04141 0.93966 0.94420 1.70026 1.37345 1.38026 1.09917 0.85171 0.77836 0.78250 0.78376 1.18524 1.20464 1.19779 1.86502 1.35039 1.62943 1.42481 1.21603 0.79897 0.76166 0.88462 1.90773 1.56116 1.59915 1.36904 1.18984 0.97309 1.04693 0.92613 1.21532 0.98793 0.95057 0.90582 1.21572 0.97598 0.97578 0.99618 1.19006 0.93215 0.92515 0.91982 1.17103 0.87607 0.99891 0.93445 1.20918 0.94700 0.93592 0.98388 1.43513 1.14763 1.45416 1.26927 1.20997 0.82199 0.82555 0.81844 1.90739 1.25140 1.53608 1.76006 1.21930 1.02918 0.97173 0.96995 1.22160 0.90495 0.98008 0.94565 1.58563 1.15674 1.42941 1.06832 1.22674 0.91169 1.01932 0.97021 0.94713 0.94484 0.92029 0.93267 0.89587 0.92109 0.83587 0.80873 0.84703 0.74707 0.85405 0.88614 0.87803 0.89451 0.91813 0.88947 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.67 8.56 71.99 0.62 -5.06 16 2 C -0.13 -6.41 5.49 30.60 0.17 -6.24 16 3 C 0.23 12.09 2.25 29.85 0.07 12.16 16 4 H 0.01 0.35 7.16 -2.39 -0.02 0.33 16 5 C -0.55 -30.23 8.90 25.60 0.23 -30.00 16 6 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.92 -51.78 11.29 21.45 0.24 -51.53 16 9 Si 0.98 42.03 29.54 68.60 2.03 44.05 16 10 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 12 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 13 O -0.35 -16.40 9.04 -56.70 -0.51 -16.92 16 14 C 0.49 20.49 6.34 70.23 0.45 20.93 16 15 O -0.54 -25.68 13.53 19.77 0.27 -25.41 16 16 C -0.13 -4.07 5.88 -20.09 -0.12 -4.19 16 17 C -0.04 -0.95 9.60 22.53 0.22 -0.74 16 18 C -0.14 -2.33 8.94 22.33 0.20 -2.13 16 19 C 0.13 2.31 4.73 38.58 0.18 2.49 16 20 C 0.11 2.46 5.40 38.12 0.21 2.67 16 21 C -0.06 -1.46 9.51 22.62 0.22 -1.25 16 22 N -0.66 -13.93 5.34 -303.09 -1.62 -15.55 16 23 C 0.53 11.83 7.04 87.61 0.62 12.45 16 24 O -0.58 -17.00 17.96 -3.10 -0.06 -17.06 16 25 C -0.15 -2.12 5.41 29.66 0.16 -1.96 16 26 C 0.07 0.73 5.59 86.22 0.48 1.21 16 27 N -0.52 -7.09 4.31 -721.42 -3.11 -10.21 16 28 C 0.02 0.14 8.43 127.69 1.08 1.22 16 29 H 0.03 1.61 7.79 -2.39 -0.02 1.60 16 30 H 0.04 1.55 6.06 -2.39 -0.01 1.53 16 31 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.05 2.31 8.14 -2.39 -0.02 2.30 16 33 H 0.09 4.68 5.95 -2.39 -0.01 4.66 16 34 H 0.27 14.27 8.31 -92.70 -0.77 13.50 16 35 H 0.15 3.49 7.59 -2.91 -0.02 3.47 16 36 H 0.17 1.64 6.09 -2.91 -0.02 1.62 16 37 H 0.14 3.79 7.65 -2.91 -0.02 3.76 16 38 H 0.41 8.25 8.95 -92.71 -0.83 7.42 16 39 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.10 1.34 7.32 -2.39 -0.02 1.32 16 41 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.09 0.48 8.03 -2.39 -0.02 0.46 16 43 H 0.06 0.28 6.83 -2.39 -0.02 0.26 16 44 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.08 0.69 7.95 -2.39 -0.02 0.67 16 Total: -1.00 -72.39 363.86 2.65 -69.75 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.20 Total: 19.98 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 5.21 Total: 2.90 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -4.49 Total: -77.29 kcal Atomic # 8 Polarization: -59.08 SS G_CDS: -0.30 Total: -59.39 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -72.39 2.65 -69.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187920064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.960 kcal (2) G-P(sol) polarization free energy of solvation -72.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds