Wall clock time and date at job start Tue Mar 31 2020 17:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48498 * 109.47416 * 59.99812 * 9 7 5 11 11 H 1.48508 * 109.46609 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46903 * 299.99397 * 9 7 5 13 13 O 1.45199 * 109.47039 * 295.00131 * 3 2 1 14 14 C 1.34233 * 117.00343 * 90.00377 * 13 3 2 15 15 O 1.20825 * 119.99677 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00210 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46881 * 179.97438 * 16 14 13 18 18 N 1.46503 * 109.46789 * 179.97438 * 17 16 14 19 19 C 1.39287 * 125.81389 * 90.00864 * 18 17 16 20 20 C 1.38659 * 133.33807 * 359.95042 * 19 18 17 21 21 C 1.38102 * 119.84999 * 180.02562 * 20 19 18 22 22 C 1.38443 * 120.28540 * 0.04159 * 21 20 19 23 23 C 1.38102 * 120.28131 * 359.95689 * 22 21 20 24 24 C 1.38666 * 119.85430 * 0.02562 * 23 22 21 25 25 N 1.39272 * 133.33419 * 179.97438 * 24 23 22 26 26 C 1.46502 * 125.82234 * 0.04979 * 25 24 23 27 27 C 1.34639 * 125.82150 * 269.69011 * 18 17 16 28 28 O 1.21695 * 125.16022 * 0.02562 * 27 18 17 29 29 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 30 30 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 31 31 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 33 33 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 34 34 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 35 35 H 1.08990 * 109.47304 * 299.99978 * 16 14 13 36 36 H 1.08999 * 109.46899 * 60.00161 * 16 14 13 37 37 H 1.08990 * 109.47643 * 300.00395 * 17 16 14 38 38 H 1.08999 * 109.46713 * 60.00671 * 17 16 14 39 39 H 1.08000 * 120.07364 * 0.02562 * 20 19 18 40 40 H 1.08002 * 119.85863 * 180.02562 * 21 20 19 41 41 H 1.08004 * 119.85560 * 179.97438 * 22 21 20 42 42 H 1.08003 * 120.07662 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.46806 * 90.00531 * 26 25 24 44 44 H 1.08997 * 109.47037 * 209.99947 * 26 25 24 45 45 H 1.08994 * 109.47178 * 330.00435 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.5056 2.2722 1.3738 11 1 6.3981 0.2106 2.6470 12 1 6.5923 0.1349 0.2312 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2560 15 8 -0.2193 2.7370 -0.2655 16 6 0.0073 3.4226 -2.5084 17 6 -1.3615 4.0591 -2.2591 18 7 -1.8135 4.7373 -3.4765 19 6 -2.5697 4.1639 -4.4960 20 6 -3.0968 2.8965 -4.6923 21 6 -3.8220 2.6232 -5.8353 22 6 -4.0241 3.6087 -6.7864 23 6 -3.5030 4.8739 -6.5997 24 6 -2.7738 5.1581 -5.4550 25 7 -2.1358 6.3048 -4.9883 26 6 -2.0893 7.5991 -5.6731 27 6 -1.5740 6.0228 -3.7976 28 8 -0.9426 6.8093 -3.1167 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 3.8292 -0.0558 2.9526 35 1 0.7243 4.1969 -2.7809 36 1 -0.0713 2.6985 -3.3193 37 1 -2.0783 3.2846 -1.9868 38 1 -1.2831 4.7831 -1.4481 39 1 -2.9407 2.1250 -3.9529 40 1 -4.2331 1.6362 -5.9882 41 1 -4.5920 3.3872 -7.6779 42 1 -3.6630 5.6404 -7.3435 43 1 -2.9407 8.2049 -5.3630 44 1 -1.1639 8.1137 -5.4148 45 1 -2.1288 7.4415 -6.7509 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187966142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:16 Heat of formation + Delta-G solvation = -63.670032 kcal Electronic energy + Delta-G solvation = -28359.253086 eV Core-core repulsion = 24342.775801 eV Total energy + Delta-G solvation = -4016.477284 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.70872 -39.72000 -38.55551 -36.53397 -36.07990 -35.65527 -33.53017 -32.19902 -31.32441 -30.75736 -29.20958 -27.89681 -27.19997 -24.74835 -23.14833 -22.70006 -22.63638 -21.00288 -20.34899 -19.43253 -18.21172 -17.84227 -17.04335 -16.71541 -16.58456 -16.25630 -15.79246 -15.50350 -14.90182 -14.62688 -14.51624 -14.40607 -14.33245 -13.92059 -13.65834 -13.24007 -13.06367 -12.83181 -12.77269 -12.57633 -12.41015 -12.06700 -11.51043 -11.45948 -11.29638 -11.24676 -11.17512 -10.95206 -10.78130 -10.72423 -10.66752 -10.61853 -10.29996 -9.83146 -9.66381 -9.38797 -8.83244 -8.67547 -8.45942 -8.02816 -6.19058 -4.26085 0.91241 1.07829 1.86886 2.71032 2.91499 2.94036 3.26560 3.29979 3.32510 3.41085 3.70614 4.19056 4.33732 4.40807 4.62226 4.76436 4.79108 4.87436 4.94683 4.98099 5.11485 5.12996 5.19052 5.28760 5.33630 5.45262 5.59439 5.74909 5.82002 5.86196 6.03741 6.18115 6.19636 6.25237 6.26135 6.34417 6.42648 6.52746 6.84232 6.93423 7.08624 7.14212 7.22930 7.60613 7.72210 7.92207 8.00156 8.14524 8.59469 8.86824 9.39067 10.87740 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018582 B = 0.002617 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.479615 B =10698.541626 C =11524.694570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.048 0.952 5 C -0.523 4.523 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.354 6.354 14 C 0.460 3.540 15 O -0.518 6.518 16 C -0.136 4.136 17 C 0.145 3.855 18 N -0.536 5.536 19 C 0.094 3.906 20 C -0.102 4.102 21 C -0.110 4.110 22 C -0.113 4.113 23 C -0.107 4.107 24 C 0.088 3.912 25 N -0.545 5.545 26 C 0.102 3.898 27 C 0.678 3.322 28 O -0.548 6.548 29 H 0.053 0.947 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.041 0.959 33 H 0.109 0.891 34 H 0.267 0.733 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.373 7.015 -19.418 26.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.561 4.561 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.270 6.270 14 C 0.302 3.698 15 O -0.408 6.408 16 C -0.175 4.175 17 C 0.024 3.976 18 N -0.257 5.257 19 C -0.008 4.008 20 C -0.124 4.124 21 C -0.130 4.130 22 C -0.132 4.132 23 C -0.128 4.128 24 C -0.013 4.013 25 N -0.267 5.267 26 C -0.040 4.040 27 C 0.381 3.619 28 O -0.423 6.423 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.127 0.873 34 H 0.077 0.923 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.974 7.566 -18.330 25.464 hybrid contribution 0.950 -0.067 0.198 0.973 sum -15.024 7.499 -18.132 24.713 Atomic orbital electron populations 1.21856 0.98369 0.98999 1.00687 1.22019 0.92650 0.99332 1.03379 1.20699 0.95049 0.88760 0.78581 0.93393 1.21011 0.89689 1.39190 1.06205 0.91393 1.24882 0.99262 0.94722 0.95033 1.69879 1.35483 1.37879 1.09339 0.86338 0.83859 0.78522 0.77457 1.19967 1.21010 1.19939 1.86477 1.33973 1.62266 1.44272 1.22829 0.81102 0.76949 0.88890 1.90625 1.55601 1.58740 1.35860 1.21650 0.97895 1.01470 0.96448 1.21365 0.94913 0.97872 0.83433 1.45241 1.49937 1.10333 1.20228 1.18140 0.98718 0.94887 0.89009 1.20184 0.99443 0.93396 0.99339 1.20887 0.99005 0.99804 0.93272 1.20854 1.00541 0.92088 0.99752 1.20027 0.99493 0.98046 0.95247 1.18094 1.00683 0.85782 0.96727 1.45021 1.50801 1.11144 1.19721 1.21720 1.03958 0.81365 0.96921 1.15999 0.81770 0.82366 0.81757 1.91069 1.45329 1.51017 1.54892 0.92762 0.95043 0.94792 0.93970 0.87330 0.92314 0.87629 0.87890 0.88080 0.87625 0.84948 0.84923 0.85073 0.85433 0.91367 0.89408 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.57 37.16 0.32 -2.70 16 2 C -0.14 -3.33 5.49 -26.73 -0.15 -3.48 16 3 C 0.22 5.87 2.25 -27.88 -0.06 5.80 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.72 8.90 -34.44 -0.31 -15.02 16 6 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -25.09 11.31 55.43 0.63 -24.46 16 9 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 O -0.35 -8.35 9.81 -39.27 -0.39 -8.74 16 14 C 0.46 9.27 6.41 36.00 0.23 9.50 16 15 O -0.52 -11.40 13.12 -18.75 -0.25 -11.65 16 16 C -0.14 -2.05 6.14 -27.88 -0.17 -2.22 16 17 C 0.15 2.01 5.27 -4.04 -0.02 1.99 16 18 N -0.54 -7.14 2.78 -118.90 -0.33 -7.47 16 19 C 0.09 1.06 6.83 -83.80 -0.57 0.48 16 20 C -0.10 -0.93 10.02 -39.48 -0.40 -1.33 16 21 C -0.11 -0.77 10.03 -39.56 -0.40 -1.17 16 22 C -0.11 -0.71 10.03 -39.56 -0.40 -1.11 16 23 C -0.11 -0.78 10.02 -39.47 -0.40 -1.18 16 24 C 0.09 0.90 6.83 -83.80 -0.57 0.33 16 25 N -0.54 -6.15 3.18 -126.32 -0.40 -6.55 16 26 C 0.10 0.75 11.00 59.85 0.66 1.41 16 27 C 0.68 9.96 8.45 -87.16 -0.74 9.23 16 28 O -0.55 -9.86 17.48 5.19 0.09 -9.77 16 29 H 0.05 1.21 7.80 -51.93 -0.40 0.81 16 30 H 0.03 0.62 6.06 -51.93 -0.31 0.31 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.11 2.90 5.96 -51.93 -0.31 2.59 16 34 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.11 1.62 8.14 -51.93 -0.42 1.19 16 36 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.10 1.26 8.10 -51.93 -0.42 0.84 16 38 H 0.11 1.62 7.98 -51.93 -0.41 1.20 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 41 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 42 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.69 8.04 -51.93 -0.42 0.28 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 378.36 15.07 5.70 5.70 Total: -1.00 -33.67 378.36 -9.45 -43.12 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.43 Total: 1.45 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -3.06 Total: 2.19 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -0.11 Total: -38.48 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.54 Total: -30.15 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.67 -9.45 -43.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187966142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.549 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds