Wall clock time and date at job start Tue Mar 31 2020 17:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48498 * 109.47416 * 59.99812 * 9 7 5 11 11 H 1.48508 * 109.46609 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46903 * 299.99397 * 9 7 5 13 13 O 1.45199 * 109.47039 * 295.00131 * 3 2 1 14 14 C 1.34233 * 117.00343 * 90.00377 * 13 3 2 15 15 O 1.20825 * 119.99677 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00210 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46881 * 179.97438 * 16 14 13 18 18 N 1.46503 * 109.46789 * 179.97438 * 17 16 14 19 19 C 1.39287 * 125.81389 * 90.00864 * 18 17 16 20 20 C 1.38659 * 133.33807 * 359.95042 * 19 18 17 21 21 C 1.38102 * 119.84999 * 180.02562 * 20 19 18 22 22 C 1.38443 * 120.28540 * 0.04159 * 21 20 19 23 23 C 1.38102 * 120.28131 * 359.95689 * 22 21 20 24 24 C 1.38666 * 119.85430 * 0.02562 * 23 22 21 25 25 N 1.39272 * 133.33419 * 179.97438 * 24 23 22 26 26 C 1.46502 * 125.82234 * 0.04979 * 25 24 23 27 27 C 1.34639 * 125.82150 * 269.69011 * 18 17 16 28 28 O 1.21695 * 125.16022 * 0.02562 * 27 18 17 29 29 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 30 30 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 31 31 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 33 33 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 34 34 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 35 35 H 1.08990 * 109.47304 * 299.99978 * 16 14 13 36 36 H 1.08999 * 109.46899 * 60.00161 * 16 14 13 37 37 H 1.08990 * 109.47643 * 300.00395 * 17 16 14 38 38 H 1.08999 * 109.46713 * 60.00671 * 17 16 14 39 39 H 1.08000 * 120.07364 * 0.02562 * 20 19 18 40 40 H 1.08002 * 119.85863 * 180.02562 * 21 20 19 41 41 H 1.08004 * 119.85560 * 179.97438 * 22 21 20 42 42 H 1.08003 * 120.07662 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.46806 * 90.00531 * 26 25 24 44 44 H 1.08997 * 109.47037 * 209.99947 * 26 25 24 45 45 H 1.08994 * 109.47178 * 330.00435 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.5056 2.2722 1.3738 11 1 6.3981 0.2106 2.6470 12 1 6.5923 0.1349 0.2312 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2560 15 8 -0.2193 2.7370 -0.2655 16 6 0.0073 3.4226 -2.5084 17 6 -1.3615 4.0591 -2.2591 18 7 -1.8135 4.7373 -3.4765 19 6 -2.5697 4.1639 -4.4960 20 6 -3.0968 2.8965 -4.6923 21 6 -3.8220 2.6232 -5.8353 22 6 -4.0241 3.6087 -6.7864 23 6 -3.5030 4.8739 -6.5997 24 6 -2.7738 5.1581 -5.4550 25 7 -2.1358 6.3048 -4.9883 26 6 -2.0893 7.5991 -5.6731 27 6 -1.5740 6.0228 -3.7976 28 8 -0.9426 6.8093 -3.1167 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 3.8292 -0.0558 2.9526 35 1 0.7243 4.1969 -2.7809 36 1 -0.0713 2.6985 -3.3193 37 1 -2.0783 3.2846 -1.9868 38 1 -1.2831 4.7831 -1.4481 39 1 -2.9407 2.1250 -3.9529 40 1 -4.2331 1.6362 -5.9882 41 1 -4.5920 3.3872 -7.6779 42 1 -3.6630 5.6404 -7.3435 43 1 -2.9407 8.2049 -5.3630 44 1 -1.1639 8.1137 -5.4148 45 1 -2.1288 7.4415 -6.7509 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187966142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:15 Heat of formation + Delta-G solvation = -81.829298 kcal Electronic energy + Delta-G solvation = -28360.040531 eV Core-core repulsion = 24342.775801 eV Total energy + Delta-G solvation = -4017.264729 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.56820 -41.46552 -39.38653 -38.01565 -37.04052 -36.91579 -35.53381 -33.56145 -33.05728 -31.36673 -30.07367 -29.34944 -28.51568 -26.00824 -24.97992 -23.44841 -23.40889 -22.55473 -21.50984 -21.15946 -19.09724 -18.96969 -18.71586 -18.15025 -17.78176 -17.47178 -17.12979 -17.04098 -16.39479 -15.91603 -15.52940 -15.28108 -15.04386 -14.99072 -14.80411 -14.69521 -14.44451 -14.13467 -13.80729 -13.65666 -13.36184 -13.34132 -13.24735 -13.14154 -13.00826 -12.81847 -12.57057 -12.48583 -12.17083 -12.00790 -11.77113 -11.75315 -11.64215 -11.48301 -11.43006 -11.28840 -10.84680 -10.54130 -9.34652 -8.84211 -8.29491 -6.46303 0.27899 0.43461 0.94657 1.27711 1.39847 1.43142 1.51129 1.66471 1.94930 2.24466 2.43253 2.81581 3.00015 3.48829 3.53304 3.54320 3.91773 3.92491 4.04485 4.20290 4.28165 4.36842 4.38552 4.39208 4.41084 4.45771 4.50193 4.57811 4.65887 4.67712 4.74757 4.83290 4.90883 5.09530 5.11878 5.21881 5.27751 5.38806 5.49156 5.54164 5.61773 5.66613 5.68714 5.81940 5.96086 6.10726 6.27999 6.57276 6.92513 7.00081 7.24921 8.76964 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018582 B = 0.002617 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.479615 B =10698.541626 C =11524.694570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.129 4.129 3 C 0.224 3.776 4 H 0.008 0.992 5 C -0.555 4.555 6 H 0.063 0.937 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.979 3.021 10 H -0.272 1.272 11 H -0.275 1.275 12 H -0.263 1.263 13 O -0.364 6.364 14 C 0.457 3.543 15 O -0.538 6.538 16 C -0.117 4.117 17 C 0.153 3.847 18 N -0.538 5.538 19 C 0.061 3.939 20 C -0.112 4.112 21 C -0.105 4.105 22 C -0.102 4.102 23 C -0.101 4.101 24 C 0.071 3.929 25 N -0.540 5.540 26 C 0.094 3.906 27 C 0.660 3.340 28 O -0.599 6.599 29 H 0.035 0.965 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.271 0.729 35 H 0.103 0.897 36 H 0.131 0.869 37 H 0.115 0.885 38 H 0.082 0.918 39 H 0.136 0.864 40 H 0.160 0.840 41 H 0.167 0.833 42 H 0.157 0.843 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.686 6.035 -22.625 29.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.026 0.974 5 C -0.592 4.592 6 H 0.081 0.919 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.802 3.198 10 H -0.197 1.197 11 H -0.200 1.200 12 H -0.188 1.188 13 O -0.281 6.281 14 C 0.300 3.700 15 O -0.429 6.429 16 C -0.156 4.156 17 C 0.031 3.969 18 N -0.258 5.258 19 C -0.039 4.039 20 C -0.133 4.133 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.030 4.030 25 N -0.262 5.262 26 C -0.046 4.046 27 C 0.363 3.637 28 O -0.479 6.479 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.121 0.879 36 H 0.149 0.851 37 H 0.134 0.866 38 H 0.100 0.900 39 H 0.154 0.846 40 H 0.177 0.823 41 H 0.184 0.816 42 H 0.175 0.825 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.346 6.571 -21.603 28.473 hybrid contribution 1.201 0.224 1.083 1.632 sum -16.145 6.795 -20.520 26.980 Atomic orbital electron populations 1.21714 0.95877 1.00783 1.00288 1.21854 0.94846 0.97686 1.02342 1.20407 0.94435 0.89536 0.78479 0.97444 1.21316 0.90734 1.40280 1.06878 0.91900 1.25776 1.04175 0.93840 0.94325 1.70000 1.37457 1.37890 1.09673 0.85295 0.77807 0.78681 0.78011 1.19683 1.20002 1.18799 1.86463 1.35879 1.62980 1.42766 1.23727 0.79776 0.76186 0.90266 1.90614 1.55851 1.59279 1.37139 1.21622 0.98261 1.01369 0.94304 1.21159 0.94576 0.97537 0.83591 1.45102 1.50160 1.10170 1.20385 1.18497 1.00103 0.96324 0.88971 1.20428 0.99794 0.92657 1.00449 1.21296 0.97592 1.01275 0.92249 1.21339 0.99253 0.91153 1.00375 1.20453 0.97935 0.99310 0.94449 1.18455 1.01781 0.84969 0.97774 1.45132 1.49899 1.12565 1.18590 1.22016 1.03935 0.80090 0.98580 1.16287 0.82205 0.82500 0.82691 1.91008 1.47845 1.52403 1.56646 0.94573 0.93974 0.91818 0.93479 0.89668 0.91964 0.87891 0.85113 0.86641 0.89959 0.84587 0.82279 0.81565 0.82547 0.90174 0.90579 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 8.57 71.98 0.62 -4.87 16 2 C -0.13 -6.46 5.49 30.60 0.17 -6.29 16 3 C 0.22 12.35 2.25 29.85 0.07 12.42 16 4 H 0.01 0.48 7.16 -2.39 -0.02 0.46 16 5 C -0.55 -32.10 8.90 25.60 0.23 -31.87 16 6 H 0.06 3.60 7.81 -2.92 -0.02 3.57 16 7 C 0.02 1.06 5.29 84.66 0.45 1.50 16 8 N -0.91 -52.65 11.31 21.45 0.24 -52.41 16 9 Si 0.98 43.62 29.54 68.60 2.03 45.64 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 13 O -0.36 -17.69 9.81 -51.45 -0.50 -18.20 16 14 C 0.46 18.91 6.41 71.24 0.46 19.36 16 15 O -0.54 -24.60 13.12 21.97 0.29 -24.31 16 16 C -0.12 -3.57 6.14 29.85 0.18 -3.39 16 17 C 0.15 4.38 5.27 86.38 0.46 4.84 16 18 N -0.54 -14.57 2.78 -648.39 -1.81 -16.38 16 19 C 0.06 1.30 6.83 38.39 0.26 1.57 16 20 C -0.11 -1.80 10.02 22.34 0.22 -1.57 16 21 C -0.10 -1.06 10.03 22.29 0.22 -0.84 16 22 C -0.10 -0.80 10.03 22.29 0.22 -0.58 16 23 C -0.10 -1.08 10.02 22.34 0.22 -0.86 16 24 C 0.07 1.31 6.83 38.40 0.26 1.58 16 25 N -0.54 -11.95 3.18 -671.87 -2.14 -14.09 16 26 C 0.09 1.29 11.00 127.77 1.41 2.69 16 27 C 0.66 20.17 8.45 179.14 1.51 21.68 16 28 O -0.60 -23.06 17.48 -4.33 -0.08 -23.13 16 29 H 0.04 1.63 7.80 -2.39 -0.02 1.62 16 30 H 0.04 1.66 6.06 -2.39 -0.01 1.65 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.09 4.67 5.96 -2.39 -0.01 4.66 16 34 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 36 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 37 H 0.12 2.90 8.10 -2.39 -0.02 2.88 16 38 H 0.08 2.72 7.98 -2.39 -0.02 2.70 16 39 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 41 H 0.17 0.21 8.06 -2.91 -0.02 0.19 16 42 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 43 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.08 1.23 8.04 -2.39 -0.02 1.21 16 45 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -77.43 378.36 5.99 -71.44 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 1.00 Total: 16.06 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 6.96 Total: 15.37 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -3.70 Total: -82.88 kcal Atomic # 8 Polarization: -65.34 SS G_CDS: -0.29 Total: -65.64 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -77.43 5.99 -71.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187966142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.388 kcal (2) G-P(sol) polarization free energy of solvation -77.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds