Wall clock time and date at job start Tue Mar 31 2020 17:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47178 * 2 1 4 4 H 1.09002 * 109.47157 * 304.51347 * 3 2 1 5 5 C 1.50699 * 109.47206 * 184.51535 * 3 2 1 6 6 H 1.08004 * 120.00347 * 245.62441 * 5 3 2 7 7 C 1.37881 * 120.00173 * 65.62249 * 5 3 2 8 8 N 1.31510 * 120.00258 * 195.78829 * 7 5 3 9 9 Si 1.86800 * 119.99770 * 15.78895 * 7 5 3 10 10 H 1.48498 * 109.47334 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47050 * 299.99962 * 9 7 5 12 12 H 1.48497 * 109.47480 * 59.99908 * 9 7 5 13 13 O 1.45199 * 109.47308 * 64.51367 * 3 2 1 14 14 C 1.34232 * 117.00062 * 270.00013 * 13 3 2 15 15 O 1.20825 * 119.99721 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99837 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.46878 * 179.97438 * 16 14 13 18 18 N 1.46500 * 109.46875 * 180.02562 * 17 16 14 19 19 C 1.39282 * 125.82406 * 89.99979 * 18 17 16 20 20 C 1.38661 * 133.33115 * 359.95771 * 19 18 17 21 21 C 1.38105 * 119.85202 * 180.02562 * 20 19 18 22 22 C 1.38440 * 120.28050 * 0.04421 * 21 20 19 23 23 C 1.38109 * 120.28470 * 359.95172 * 22 21 20 24 24 C 1.38656 * 119.84802 * 0.02562 * 23 22 21 25 25 N 1.39282 * 133.33234 * 179.97438 * 24 23 22 26 26 C 1.46502 * 125.81818 * 0.06200 * 25 24 23 27 27 C 1.34638 * 108.36484 * 179.78373 * 25 24 23 28 28 O 1.21684 * 125.16559 * 180.26561 * 27 25 24 29 29 H 1.09005 * 109.47269 * 60.00199 * 1 2 3 30 30 H 1.09001 * 109.47481 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47387 * 300.00153 * 1 2 3 32 32 H 1.09002 * 109.46897 * 239.99885 * 2 1 3 33 33 H 1.08996 * 109.46881 * 120.00217 * 2 1 3 34 34 H 0.97000 * 120.00250 * 354.87661 * 8 7 5 35 35 H 1.09000 * 109.47411 * 299.99911 * 16 14 13 36 36 H 1.09008 * 109.47165 * 60.00013 * 16 14 13 37 37 H 1.08995 * 109.47174 * 299.99692 * 17 16 14 38 38 H 1.08997 * 109.46832 * 60.00430 * 17 16 14 39 39 H 1.08004 * 120.07749 * 0.02562 * 20 19 18 40 40 H 1.07999 * 119.86086 * 180.02562 * 21 20 19 41 41 H 1.08002 * 119.85768 * 179.97438 * 22 21 20 42 42 H 1.07993 * 120.07005 * 180.02562 * 23 22 21 43 43 H 1.08993 * 109.47137 * 89.99923 * 26 25 24 44 44 H 1.09008 * 109.46721 * 210.00027 * 26 25 24 45 45 H 1.08997 * 109.47195 * 329.99140 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6121 1.9791 -0.8468 5 6 3.5428 1.4439 -0.1119 6 1 4.1450 1.8079 0.7075 7 6 4.1492 0.9804 -1.2602 8 7 5.4313 0.6878 -1.2547 9 14 3.1494 0.7682 -2.8238 10 1 4.0278 0.2598 -3.9078 11 1 2.0513 -0.2017 -2.5814 12 1 2.5741 2.0771 -3.2251 13 8 1.6460 2.0951 1.2357 14 6 0.4627 2.7289 1.2397 15 8 -0.2209 2.7384 0.2435 16 6 -0.0130 3.4287 2.4868 17 6 -1.3791 4.0658 2.2244 18 7 -1.8412 4.7466 3.4365 19 6 -1.5903 6.0751 3.7714 20 6 -0.8945 7.0988 3.1464 21 6 -0.8194 8.3425 3.7420 22 6 -1.4350 8.5711 4.9608 23 6 -2.1302 7.5577 5.5909 24 6 -2.2115 6.3058 5.0003 25 7 -2.8211 5.1105 5.3739 26 6 -3.5921 4.8878 6.5995 27 6 -2.5861 4.1963 4.4138 28 8 -2.9841 3.0464 4.4285 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.9665 0.8676 -0.4659 35 1 -0.0984 2.7064 3.2986 36 1 0.7019 4.2037 2.7637 37 1 -1.2931 4.7883 1.4128 38 1 -2.0940 3.2912 1.9473 39 1 -0.4125 6.9240 2.1958 40 1 -0.2779 9.1401 3.2552 41 1 -1.3715 9.5462 5.4207 42 1 -2.6094 7.7399 6.5414 43 1 -4.6415 5.1177 6.4154 44 1 -3.4965 3.8456 6.9046 45 1 -3.2119 5.5341 7.3905 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187966171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:21 Heat of formation + Delta-G solvation = -62.423626 kcal Electronic energy + Delta-G solvation = -28440.744683 eV Core-core repulsion = 24424.321447 eV Total energy + Delta-G solvation = -4016.423236 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.75863 -39.93718 -38.60120 -36.66703 -36.12905 -35.81239 -33.60303 -32.31069 -31.82028 -30.79151 -29.26646 -27.99544 -27.41764 -24.79863 -22.77867 -22.71538 -22.45855 -21.25346 -20.46818 -19.59175 -18.25444 -18.00873 -17.68485 -16.92849 -16.83245 -16.31762 -16.02086 -15.69095 -15.00237 -14.69628 -14.49876 -14.43999 -14.20324 -13.90090 -13.60988 -13.34683 -13.26963 -12.83819 -12.77439 -12.67661 -12.51633 -12.44443 -12.24366 -11.68968 -11.49699 -11.35901 -11.26614 -10.92546 -10.82770 -10.76492 -10.68206 -10.53476 -10.05643 -9.94452 -9.65635 -9.52286 -8.86802 -8.71477 -8.40307 -8.07479 -6.66018 -4.27260 0.87950 1.04355 1.81226 2.64989 2.75298 2.85862 3.30516 3.37353 3.37453 3.49608 3.57869 4.15411 4.34613 4.35751 4.58984 4.68047 4.70924 4.83460 4.90720 4.94162 5.07808 5.08244 5.14264 5.22957 5.24417 5.41341 5.51474 5.54487 5.72345 5.80136 5.90900 5.97056 5.98731 6.08128 6.15278 6.20630 6.30580 6.43419 6.48191 6.64242 6.77329 6.82042 7.03538 7.16902 7.35372 7.79036 7.94296 8.21415 8.41887 8.80963 9.41044 10.76935 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018575 B = 0.002757 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.054826 B =10152.384721 C =11012.914372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.149 4.149 3 C 0.201 3.799 4 H 0.039 0.961 5 C -0.607 4.607 6 H 0.068 0.932 7 C 0.039 3.961 8 N -0.894 5.894 9 Si 1.037 2.963 10 H -0.279 1.279 11 H -0.268 1.268 12 H -0.278 1.278 13 O -0.342 6.342 14 C 0.460 3.540 15 O -0.519 6.519 16 C -0.136 4.136 17 C 0.146 3.854 18 N -0.537 5.537 19 C 0.093 3.907 20 C -0.102 4.102 21 C -0.109 4.109 22 C -0.112 4.112 23 C -0.107 4.107 24 C 0.088 3.912 25 N -0.544 5.544 26 C 0.102 3.898 27 C 0.679 3.321 28 O -0.549 6.549 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.271 0.729 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.773 15.981 14.577 27.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C 0.148 3.852 4 H 0.057 0.943 5 C -0.645 4.645 6 H 0.086 0.914 7 C -0.167 4.167 8 N -0.527 5.527 9 Si 0.864 3.136 10 H -0.205 1.205 11 H -0.195 1.195 12 H -0.204 1.204 13 O -0.257 6.257 14 C 0.302 3.698 15 O -0.410 6.410 16 C -0.175 4.175 17 C 0.024 3.976 18 N -0.258 5.258 19 C -0.008 4.008 20 C -0.123 4.123 21 C -0.129 4.129 22 C -0.132 4.132 23 C -0.128 4.128 24 C -0.013 4.013 25 N -0.267 5.267 26 C -0.040 4.040 27 C 0.382 3.618 28 O -0.425 6.425 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.154 14.430 12.714 25.771 hybrid contribution -0.032 0.479 1.662 1.730 sum -17.187 14.909 14.376 26.914 Atomic orbital electron populations 1.21905 0.97344 0.99950 1.01425 1.22450 0.93865 0.99355 1.03043 1.20950 0.96200 0.88101 0.79996 0.94291 1.21946 0.88649 1.49230 1.04641 0.91392 1.25675 0.97382 0.92589 1.01053 1.70862 1.07210 1.40727 1.33921 0.84172 0.75607 0.77818 0.75993 1.20456 1.19450 1.20403 1.86540 1.33929 1.62053 1.43167 1.22964 0.80864 0.76974 0.88998 1.90616 1.55957 1.59035 1.35407 1.21664 0.97619 1.01665 0.96528 1.21353 0.95156 0.98047 0.83006 1.45215 1.49620 1.09434 1.21511 1.18131 1.01947 0.85800 0.94954 1.20196 1.00105 0.91186 1.00848 1.20900 1.00176 0.96104 0.95721 1.20867 0.98031 0.98646 0.95614 1.20030 1.02444 0.89591 1.00728 1.18089 0.99533 0.88850 0.94813 1.45017 1.50798 1.09558 1.21288 1.21724 0.95085 1.03983 0.83180 1.15987 0.81001 0.84653 0.80209 1.91058 1.58298 1.14763 1.78343 0.92613 0.93995 0.94022 0.90207 0.91993 0.91828 0.87584 0.87602 0.87999 0.87657 0.84914 0.84861 0.85023 0.85400 0.91344 0.89420 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.56 37.16 0.32 -2.68 16 2 C -0.15 -3.44 5.32 -26.74 -0.14 -3.58 16 3 C 0.20 5.06 1.84 -27.89 -0.05 5.00 16 4 H 0.04 1.01 5.84 -51.93 -0.30 0.71 16 5 C -0.61 -17.33 9.17 -34.44 -0.32 -17.64 16 6 H 0.07 2.08 8.06 -52.48 -0.42 1.66 16 7 C 0.04 1.12 5.33 -17.82 -0.10 1.03 16 8 N -0.89 -26.95 13.69 55.43 0.76 -26.19 16 9 Si 1.04 24.88 26.27 -169.99 -4.47 20.42 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -5.95 5.61 56.52 0.32 -5.64 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 O -0.34 -7.84 9.80 -39.26 -0.38 -8.23 16 14 C 0.46 8.84 6.39 36.00 0.23 9.07 16 15 O -0.52 -10.71 13.13 -18.75 -0.25 -10.96 16 16 C -0.14 -1.97 6.14 -27.88 -0.17 -2.14 16 17 C 0.15 1.92 5.27 -4.04 -0.02 1.90 16 18 N -0.54 -6.90 2.78 -118.91 -0.33 -7.23 16 19 C 0.09 1.02 6.83 -83.80 -0.57 0.45 16 20 C -0.10 -0.92 10.02 -39.47 -0.40 -1.31 16 21 C -0.11 -0.77 10.03 -39.56 -0.40 -1.16 16 22 C -0.11 -0.70 10.03 -39.55 -0.40 -1.10 16 23 C -0.11 -0.77 10.02 -39.47 -0.40 -1.16 16 24 C 0.09 0.88 6.83 -83.80 -0.57 0.31 16 25 N -0.54 -5.97 3.18 -126.33 -0.40 -6.37 16 26 C 0.10 0.72 11.00 59.85 0.66 1.38 16 27 C 0.68 9.64 8.45 -87.16 -0.74 8.90 16 28 O -0.55 -9.53 17.48 5.20 0.09 -9.44 16 29 H 0.05 1.13 7.77 -51.93 -0.40 0.73 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.82 6.07 -51.93 -0.32 0.51 16 32 H 0.08 1.87 4.67 -51.93 -0.24 1.63 16 33 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.27 8.12 8.73 -40.82 -0.36 7.77 16 35 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.11 1.37 8.14 -51.92 -0.42 0.94 16 37 H 0.10 1.21 8.10 -51.93 -0.42 0.79 16 38 H 0.11 1.51 7.98 -51.93 -0.41 1.10 16 39 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 41 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 42 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 0.66 8.04 -51.92 -0.42 0.24 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -34.68 373.74 -8.81 -43.49 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.40 Total: 1.62 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -3.06 Total: -2.73 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.03 Total: -39.79 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.54 Total: -28.63 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -4.47 Total: 20.42 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.68 -8.81 -43.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187966171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.938 kcal (2) G-P(sol) polarization free energy of solvation -34.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds