Wall clock time and date at job start Tue Mar 31 2020 17:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47178 * 2 1 4 4 H 1.09002 * 109.47157 * 304.51347 * 3 2 1 5 5 C 1.50699 * 109.47206 * 184.51535 * 3 2 1 6 6 H 1.08004 * 120.00347 * 245.62441 * 5 3 2 7 7 C 1.37881 * 120.00173 * 65.62249 * 5 3 2 8 8 N 1.31510 * 120.00258 * 195.78829 * 7 5 3 9 9 Si 1.86800 * 119.99770 * 15.78895 * 7 5 3 10 10 H 1.48498 * 109.47334 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47050 * 299.99962 * 9 7 5 12 12 H 1.48497 * 109.47480 * 59.99908 * 9 7 5 13 13 O 1.45199 * 109.47308 * 64.51367 * 3 2 1 14 14 C 1.34232 * 117.00062 * 270.00013 * 13 3 2 15 15 O 1.20825 * 119.99721 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99837 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.46878 * 179.97438 * 16 14 13 18 18 N 1.46500 * 109.46875 * 180.02562 * 17 16 14 19 19 C 1.39282 * 125.82406 * 89.99979 * 18 17 16 20 20 C 1.38661 * 133.33115 * 359.95771 * 19 18 17 21 21 C 1.38105 * 119.85202 * 180.02562 * 20 19 18 22 22 C 1.38440 * 120.28050 * 0.04421 * 21 20 19 23 23 C 1.38109 * 120.28470 * 359.95172 * 22 21 20 24 24 C 1.38656 * 119.84802 * 0.02562 * 23 22 21 25 25 N 1.39282 * 133.33234 * 179.97438 * 24 23 22 26 26 C 1.46502 * 125.81818 * 0.06200 * 25 24 23 27 27 C 1.34638 * 108.36484 * 179.78373 * 25 24 23 28 28 O 1.21684 * 125.16559 * 180.26561 * 27 25 24 29 29 H 1.09005 * 109.47269 * 60.00199 * 1 2 3 30 30 H 1.09001 * 109.47481 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47387 * 300.00153 * 1 2 3 32 32 H 1.09002 * 109.46897 * 239.99885 * 2 1 3 33 33 H 1.08996 * 109.46881 * 120.00217 * 2 1 3 34 34 H 0.97000 * 120.00250 * 354.87661 * 8 7 5 35 35 H 1.09000 * 109.47411 * 299.99911 * 16 14 13 36 36 H 1.09008 * 109.47165 * 60.00013 * 16 14 13 37 37 H 1.08995 * 109.47174 * 299.99692 * 17 16 14 38 38 H 1.08997 * 109.46832 * 60.00430 * 17 16 14 39 39 H 1.08004 * 120.07749 * 0.02562 * 20 19 18 40 40 H 1.07999 * 119.86086 * 180.02562 * 21 20 19 41 41 H 1.08002 * 119.85768 * 179.97438 * 22 21 20 42 42 H 1.07993 * 120.07005 * 180.02562 * 23 22 21 43 43 H 1.08993 * 109.47137 * 89.99923 * 26 25 24 44 44 H 1.09008 * 109.46721 * 210.00027 * 26 25 24 45 45 H 1.08997 * 109.47195 * 329.99140 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6121 1.9791 -0.8468 5 6 3.5428 1.4439 -0.1119 6 1 4.1450 1.8079 0.7075 7 6 4.1492 0.9804 -1.2602 8 7 5.4313 0.6878 -1.2547 9 14 3.1494 0.7682 -2.8238 10 1 4.0278 0.2598 -3.9078 11 1 2.0513 -0.2017 -2.5814 12 1 2.5741 2.0771 -3.2251 13 8 1.6460 2.0951 1.2357 14 6 0.4627 2.7289 1.2397 15 8 -0.2209 2.7384 0.2435 16 6 -0.0130 3.4287 2.4868 17 6 -1.3791 4.0658 2.2244 18 7 -1.8412 4.7466 3.4365 19 6 -1.5903 6.0751 3.7714 20 6 -0.8945 7.0988 3.1464 21 6 -0.8194 8.3425 3.7420 22 6 -1.4350 8.5711 4.9608 23 6 -2.1302 7.5577 5.5909 24 6 -2.2115 6.3058 5.0003 25 7 -2.8211 5.1105 5.3739 26 6 -3.5921 4.8878 6.5995 27 6 -2.5861 4.1963 4.4138 28 8 -2.9841 3.0464 4.4285 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.9665 0.8676 -0.4659 35 1 -0.0984 2.7064 3.2986 36 1 0.7019 4.2037 2.7637 37 1 -1.2931 4.7883 1.4128 38 1 -2.0940 3.2912 1.9473 39 1 -0.4125 6.9240 2.1958 40 1 -0.2779 9.1401 3.2552 41 1 -1.3715 9.5462 5.4207 42 1 -2.6094 7.7399 6.5414 43 1 -4.6415 5.1177 6.4154 44 1 -3.4965 3.8456 6.9046 45 1 -3.2119 5.5341 7.3905 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187966171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:20 Heat of formation + Delta-G solvation = -82.389448 kcal Electronic energy + Delta-G solvation = -28441.610466 eV Core-core repulsion = 24424.321447 eV Total energy + Delta-G solvation = -4017.289019 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.58751 -41.59863 -39.40573 -38.13570 -37.06954 -36.94012 -35.58450 -33.97966 -33.21289 -31.39102 -30.11756 -29.52238 -28.55099 -25.92272 -24.43696 -23.48496 -23.43145 -22.77020 -21.54967 -21.22321 -19.93990 -19.01481 -18.98070 -18.23763 -17.84466 -17.63809 -17.12044 -17.06943 -16.03374 -15.98445 -15.48611 -15.29418 -15.18545 -15.01598 -14.82036 -14.74940 -14.63124 -14.45382 -14.14999 -13.88582 -13.67546 -13.40694 -13.36913 -13.06811 -13.01458 -12.73988 -12.53013 -12.42138 -12.03475 -11.94777 -11.79302 -11.69007 -11.58936 -11.54517 -11.46134 -11.27839 -10.89320 -10.59648 -9.37111 -8.95836 -8.86176 -6.58375 0.25361 0.40778 0.92820 1.18147 1.39575 1.45809 1.62426 1.66255 1.89560 2.23865 2.34850 2.78843 2.88798 3.45593 3.50296 3.51366 3.81369 3.89713 4.00861 4.13784 4.17096 4.20223 4.22236 4.34081 4.36175 4.37616 4.44468 4.47928 4.56471 4.63346 4.65977 4.72942 4.88367 4.96800 5.02823 5.05991 5.10091 5.25222 5.36127 5.43665 5.51712 5.59331 5.66252 5.79345 5.80827 5.92241 6.25470 6.35532 6.81941 6.98342 7.19790 8.46653 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018575 B = 0.002757 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.054826 B =10152.384721 C =11012.914372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.147 4.147 3 C 0.203 3.797 4 H 0.035 0.965 5 C -0.618 4.618 6 H 0.029 0.971 7 C -0.003 4.003 8 N -0.919 5.919 9 Si 1.071 2.929 10 H -0.275 1.275 11 H -0.238 1.238 12 H -0.265 1.265 13 O -0.360 6.360 14 C 0.458 3.542 15 O -0.530 6.530 16 C -0.120 4.120 17 C 0.153 3.847 18 N -0.538 5.538 19 C 0.061 3.939 20 C -0.113 4.113 21 C -0.106 4.106 22 C -0.102 4.102 23 C -0.101 4.101 24 C 0.071 3.929 25 N -0.541 5.541 26 C 0.094 3.906 27 C 0.662 3.338 28 O -0.597 6.597 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.258 0.742 35 H 0.106 0.894 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.089 0.911 39 H 0.135 0.865 40 H 0.158 0.842 41 H 0.166 0.834 42 H 0.157 0.843 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.608 18.345 15.229 30.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.185 4.185 3 C 0.149 3.851 4 H 0.053 0.947 5 C -0.656 4.656 6 H 0.048 0.952 7 C -0.203 4.203 8 N -0.554 5.554 9 Si 0.891 3.109 10 H -0.200 1.200 11 H -0.162 1.162 12 H -0.190 1.190 13 O -0.276 6.276 14 C 0.302 3.698 15 O -0.421 6.421 16 C -0.158 4.158 17 C 0.031 3.969 18 N -0.259 5.259 19 C -0.039 4.039 20 C -0.134 4.134 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.029 4.029 25 N -0.262 5.262 26 C -0.046 4.046 27 C 0.365 3.635 28 O -0.476 6.476 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.124 0.876 36 H 0.143 0.857 37 H 0.133 0.867 38 H 0.108 0.892 39 H 0.153 0.847 40 H 0.176 0.824 41 H 0.184 0.816 42 H 0.175 0.825 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -19.000 16.861 13.419 28.729 hybrid contribution 0.578 -0.040 1.602 1.704 sum -18.421 16.821 15.021 29.119 Atomic orbital electron populations 1.21815 0.94859 1.01802 1.01251 1.22351 0.96004 0.97485 1.02659 1.20692 0.93928 0.89664 0.80858 0.94689 1.22090 0.90764 1.49005 1.03691 0.95230 1.27057 0.97519 0.91650 1.04082 1.70973 1.08243 1.42697 1.33444 0.83776 0.75398 0.79293 0.72459 1.19963 1.16206 1.19005 1.86519 1.36105 1.62901 1.42125 1.23718 0.79484 0.76250 0.90321 1.90598 1.55871 1.59294 1.36343 1.21644 0.98688 1.01614 0.93889 1.21186 0.93732 0.98040 0.83907 1.45106 1.49428 1.10348 1.20990 1.18470 1.03924 0.85238 0.96257 1.20421 1.00178 0.91628 1.01218 1.21293 0.99564 0.95711 0.95964 1.21337 0.96155 0.99726 0.94925 1.20453 1.01811 0.88272 1.01596 1.18441 1.00073 0.89462 0.94961 1.45141 1.50478 1.09327 1.21282 1.22019 0.95688 1.04252 0.82669 1.16259 0.81459 0.84678 0.81142 1.91000 1.60367 1.16718 1.79556 0.92635 0.91146 0.94327 0.90425 0.92582 0.93247 0.87601 0.85746 0.86717 0.89244 0.84721 0.82427 0.81604 0.82499 0.90106 0.90482 0.86671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.39 8.56 71.98 0.62 -4.78 16 2 C -0.15 -6.66 5.32 30.59 0.16 -6.50 16 3 C 0.20 10.24 1.84 29.84 0.05 10.29 16 4 H 0.04 1.80 5.84 -2.39 -0.01 1.79 16 5 C -0.62 -36.30 9.17 25.60 0.23 -36.06 16 6 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 7 C 0.00 -0.16 5.33 84.66 0.45 0.29 16 8 N -0.92 -56.81 13.69 21.45 0.29 -56.52 16 9 Si 1.07 49.38 26.27 68.60 1.80 51.18 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.24 -9.76 5.61 99.48 0.56 -9.21 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 13 O -0.36 -16.77 9.80 -51.44 -0.50 -17.28 16 14 C 0.46 17.63 6.39 71.24 0.46 18.08 16 15 O -0.53 -21.64 13.13 21.97 0.29 -21.35 16 16 C -0.12 -3.46 6.14 29.85 0.18 -3.28 16 17 C 0.15 4.06 5.27 86.38 0.46 4.52 16 18 N -0.54 -13.90 2.78 -648.41 -1.81 -15.70 16 19 C 0.06 1.28 6.83 38.39 0.26 1.54 16 20 C -0.11 -1.84 10.02 22.34 0.22 -1.62 16 21 C -0.11 -1.12 10.03 22.29 0.22 -0.90 16 22 C -0.10 -0.83 10.03 22.29 0.22 -0.61 16 23 C -0.10 -1.07 10.02 22.34 0.22 -0.85 16 24 C 0.07 1.29 6.83 38.39 0.26 1.55 16 25 N -0.54 -11.47 3.18 -671.89 -2.14 -13.60 16 26 C 0.09 1.20 11.00 127.77 1.41 2.61 16 27 C 0.66 19.21 8.45 179.14 1.51 20.72 16 28 O -0.60 -21.66 17.48 -4.30 -0.08 -21.73 16 29 H 0.05 2.13 7.77 -2.38 -0.02 2.12 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.04 1.48 6.07 -2.38 -0.01 1.47 16 32 H 0.08 3.52 4.67 -2.39 -0.01 3.50 16 33 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.26 16.14 8.73 -92.71 -0.81 15.33 16 35 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 36 H 0.12 3.14 8.14 -2.38 -0.02 3.12 16 37 H 0.11 2.69 8.10 -2.39 -0.02 2.67 16 38 H 0.09 2.65 7.98 -2.39 -0.02 2.63 16 39 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 40 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 41 H 0.17 0.27 8.06 -2.91 -0.02 0.25 16 42 H 0.16 0.73 8.06 -2.91 -0.02 0.70 16 43 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.08 1.16 8.04 -2.38 -0.02 1.14 16 45 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -78.57 373.74 5.62 -72.95 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.81 Total: 17.04 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 6.95 Total: 5.02 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -3.65 Total: -85.83 kcal Atomic # 8 Polarization: -60.07 SS G_CDS: -0.29 Total: -60.36 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 1.80 Total: 51.18 kcal Total: -78.57 5.62 -72.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187966171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.440 kcal (2) G-P(sol) polarization free energy of solvation -78.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds