Wall clock time and date at job start Tue Mar 31 2020 17:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47073 * 2 1 4 4 H 1.09000 * 109.46865 * 55.00101 * 3 2 1 5 5 C 1.50707 * 109.46853 * 174.99679 * 3 2 1 6 6 H 1.07997 * 119.99533 * 120.00494 * 5 3 2 7 7 C 1.37871 * 120.00135 * 299.99881 * 5 3 2 8 8 N 1.31513 * 120.00071 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00098 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46883 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47060 * 120.00012 * 9 7 5 12 12 H 1.48493 * 109.47314 * 240.00279 * 9 7 5 13 13 O 1.45192 * 109.47147 * 294.99766 * 3 2 1 14 14 C 1.34230 * 117.00018 * 90.00298 * 13 3 2 15 15 O 1.20826 * 120.00015 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00046 * 180.02562 * 14 13 3 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47466 * 179.97438 * 17 16 14 19 19 C 1.35691 * 119.93133 * 94.72793 * 18 17 16 20 20 C 1.50700 * 119.38477 * 359.97438 * 19 18 17 21 21 N 1.35520 * 121.22544 * 179.72086 * 19 18 17 22 22 H 0.96998 * 119.47691 * 180.26355 * 21 19 18 23 23 C 1.34662 * 121.04678 * 0.55968 * 21 19 18 24 24 O 1.21897 * 120.10613 * 179.74642 * 23 21 19 25 25 C 1.41942 * 119.78499 * 359.72480 * 23 21 19 26 26 C 1.43204 * 120.57964 * 179.97438 * 25 23 21 27 27 N 9.93430 * 100.57028 * 145.81660 * 3 1 2 28 28 C 1.39259 * 118.83645 * 359.97438 * 25 23 21 29 29 C 1.50697 * 120.51389 * 179.97438 * 28 25 23 30 30 H 1.09001 * 109.47147 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47371 * 300.00362 * 1 2 3 32 32 H 1.09003 * 109.47087 * 60.00261 * 1 2 3 33 33 H 1.09001 * 109.47371 * 239.99638 * 2 1 3 34 34 H 1.09003 * 109.47087 * 119.99738 * 2 1 3 35 35 H 0.97002 * 119.99847 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47060 * 299.99765 * 16 14 13 37 37 H 1.09001 * 109.47380 * 59.99853 * 16 14 13 38 38 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 39 39 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 40 40 H 1.09011 * 109.46798 * 90.00535 * 20 19 18 41 41 H 1.09002 * 109.47341 * 210.00087 * 20 19 18 42 42 H 1.08994 * 109.47609 * 330.00535 * 20 19 18 43 43 H 1.09006 * 109.47215 * 270.02142 * 29 28 25 44 44 H 1.09004 * 109.47547 * 30.02370 * 29 28 25 45 45 H 1.09001 * 109.47356 * 150.02617 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8784 1.2280 8 7 3.4061 0.3367 2.1729 9 14 6.0049 0.8812 1.3820 10 1 6.5986 1.5473 0.1949 11 1 6.3988 1.6167 2.6104 12 1 6.4970 -0.5174 1.4632 13 8 1.6559 2.0916 -1.2406 14 6 0.4727 2.7255 -1.2559 15 8 -0.2193 2.7370 -0.2656 16 6 0.0070 3.4216 -2.5088 17 6 -1.3616 4.0584 -2.2596 18 6 -1.8272 4.7551 -3.5121 19 6 -2.6413 4.1083 -4.3839 20 6 -3.0701 2.6947 -4.0856 21 7 -3.0801 4.7116 -5.5153 22 1 -3.6645 4.2269 -6.1189 23 6 -2.7129 5.9714 -5.8177 24 8 -3.1141 6.4959 -6.8424 25 6 -1.8576 6.6868 -4.9394 26 6 -1.4561 8.0270 -5.2445 27 7 -1.1365 9.0908 -5.4868 28 6 -1.4159 6.0623 -3.7756 29 6 -0.5064 6.7864 -2.8167 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8292 -0.0611 2.9499 36 1 0.7240 4.1958 -2.7822 37 1 -0.0720 2.6970 -3.3192 38 1 -2.0784 3.2840 -1.9864 39 1 -1.2832 4.7830 -1.4491 40 1 -3.9956 2.7096 -3.5099 41 1 -3.2327 2.1593 -5.0210 42 1 -2.2923 2.1928 -3.5101 43 1 0.5322 6.6005 -3.0903 44 1 -0.7082 7.8566 -2.8623 45 1 -0.6853 6.4258 -1.8037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188023595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:07 Heat of formation + Delta-G solvation = -88.501316 kcal Electronic energy + Delta-G solvation = -28175.233448 eV Core-core repulsion = 24157.679399 eV Total energy + Delta-G solvation = -4017.554050 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.94868 -39.78680 -38.24616 -37.03754 -36.10168 -35.27962 -33.82694 -33.55436 -31.50198 -30.86857 -29.24293 -28.38708 -27.31515 -24.86103 -23.31932 -22.95055 -22.37164 -20.75959 -19.50122 -19.33684 -18.39030 -17.17819 -17.08975 -16.65160 -16.26855 -15.99788 -15.76551 -15.39734 -14.58558 -14.43908 -14.18337 -14.15935 -13.91492 -13.57322 -13.37005 -13.25085 -13.14334 -12.94200 -12.86201 -12.73827 -12.47401 -12.26287 -12.04312 -11.87008 -11.69681 -11.52724 -11.32349 -11.22618 -11.08221 -11.01805 -10.71368 -10.52947 -10.32779 -10.22316 -9.87747 -9.68014 -9.43595 -8.87048 -8.51978 -8.33724 -6.24804 -4.31852 -0.07457 1.29084 2.16295 2.51884 2.71104 2.91348 3.19140 3.26655 3.30625 3.46141 3.58870 3.72681 3.84642 4.05125 4.25601 4.29631 4.58287 4.74013 4.84182 4.86109 4.91902 5.05976 5.08133 5.17913 5.26851 5.33330 5.40694 5.47556 5.57112 5.73145 5.79780 5.91430 5.98705 6.13534 6.15886 6.19961 6.36239 6.37042 6.78101 6.87966 7.08405 7.18935 7.42110 7.54047 7.55917 7.66966 7.88469 8.09520 8.56173 8.82712 9.34039 10.81863 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.002589 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.623615 B =10810.584796 C =11859.017919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C 0.222 3.778 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.909 3.091 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.357 6.357 14 C 0.450 3.550 15 O -0.518 6.518 16 C -0.117 4.117 17 C -0.056 4.056 18 C -0.200 4.200 19 C 0.210 3.790 20 C -0.141 4.141 21 N -0.598 5.598 22 H 0.421 0.579 23 C 0.545 3.455 24 O -0.539 6.539 25 C -0.189 4.189 26 C 0.284 3.716 27 N -0.424 5.424 28 C 0.109 3.891 29 C -0.146 4.146 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.031 0.969 33 H 0.041 0.959 34 H 0.108 0.892 35 H 0.266 0.734 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.354 2.635 -10.208 17.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.175 4.175 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.736 3.264 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.273 6.273 14 C 0.293 3.707 15 O -0.408 6.408 16 C -0.155 4.155 17 C -0.094 4.094 18 C -0.205 4.205 19 C 0.098 3.902 20 C -0.198 4.198 21 N -0.229 5.229 22 H 0.260 0.740 23 C 0.344 3.656 24 O -0.420 6.420 25 C -0.197 4.197 26 C -0.031 4.031 27 N -0.101 5.101 28 C 0.102 3.898 29 C -0.202 4.202 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.126 0.874 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.103 0.897 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.096 0.904 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.172 4.606 -10.680 17.572 hybrid contribution 0.526 -0.797 0.035 0.956 sum -12.646 3.809 -10.646 16.963 Atomic orbital electron populations 1.21849 0.98375 0.98945 1.00674 1.22021 0.92644 0.99415 1.03372 1.20670 0.95004 0.88738 0.78661 0.93477 1.21084 0.89762 1.38910 1.06217 0.91316 1.24877 0.99209 0.94747 0.95089 1.69890 1.35309 1.37864 1.09481 0.86255 0.83946 0.77917 0.78257 1.19468 1.20755 1.20715 1.86478 1.34297 1.62348 1.44143 1.23212 0.80937 0.77091 0.89504 1.90619 1.55534 1.58650 1.36012 1.21381 0.97597 1.00974 0.95568 1.20284 0.95775 1.00281 0.93024 1.18817 1.06250 0.94831 1.00636 1.20634 0.90338 0.94736 0.84531 1.21358 1.04699 0.89245 1.04502 1.43461 1.43419 1.15132 1.20926 0.73976 1.16506 0.82038 0.80496 0.86579 1.91012 1.57477 1.66831 1.26677 1.16523 1.12157 0.90949 1.00042 1.24627 0.93215 0.91745 0.93472 1.81254 1.09773 1.11503 1.07573 1.20581 0.87327 0.91637 0.90288 1.21275 0.99233 1.00617 0.99029 0.94896 0.92787 0.94972 0.94026 0.87382 0.92423 0.88087 0.88296 0.89140 0.88919 0.88085 0.89672 0.87573 0.88237 0.90354 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.56 37.15 0.32 -2.41 16 2 C -0.14 -3.12 5.49 -26.73 -0.15 -3.26 16 3 C 0.22 5.41 2.25 -27.88 -0.06 5.35 16 4 H 0.05 1.28 7.16 -51.93 -0.37 0.91 16 5 C -0.52 -13.78 8.90 -34.44 -0.31 -14.09 16 6 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 7 C 0.06 1.65 5.29 -17.82 -0.09 1.55 16 8 N -0.89 -23.94 11.29 55.43 0.63 -23.32 16 9 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 O -0.36 -7.44 9.81 -39.26 -0.38 -7.82 16 14 C 0.45 7.47 6.41 36.01 0.23 7.70 16 15 O -0.52 -9.75 13.12 -18.75 -0.25 -9.99 16 16 C -0.12 -1.18 5.69 -27.88 -0.16 -1.34 16 17 C -0.06 -0.44 3.46 -27.89 -0.10 -0.54 16 18 C -0.20 -1.35 5.09 -105.05 -0.54 -1.88 16 19 C 0.21 1.09 6.80 -81.87 -0.56 0.53 16 20 C -0.14 -0.37 9.19 36.01 0.33 -0.04 16 21 N -0.60 -3.70 5.22 -10.88 -0.06 -3.76 16 22 H 0.42 1.54 8.75 -40.82 -0.36 1.19 16 23 C 0.55 5.76 7.72 -14.89 -0.11 5.65 16 24 O -0.54 -7.84 17.39 5.01 0.09 -7.75 16 25 C -0.19 -1.98 5.79 -106.17 -0.62 -2.59 16 26 C 0.28 3.71 13.49 -22.45 -0.30 3.41 16 27 N -0.42 -6.37 18.54 41.87 0.78 -5.60 16 28 C 0.11 0.88 5.96 -103.76 -0.62 0.26 16 29 C -0.15 -1.06 9.12 36.00 0.33 -0.73 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 1.11 7.80 -51.93 -0.40 0.70 16 32 H 0.03 0.57 6.06 -51.93 -0.31 0.25 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.11 2.74 5.95 -51.93 -0.31 2.43 16 35 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.10 0.92 8.00 -51.93 -0.42 0.50 16 37 H 0.10 0.81 7.77 -51.93 -0.40 0.40 16 38 H 0.09 0.66 6.29 -51.93 -0.33 0.33 16 39 H 0.09 0.78 6.19 -51.93 -0.32 0.46 16 40 H 0.10 0.16 8.14 -51.92 -0.42 -0.26 16 41 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 42 H 0.11 0.36 6.03 -51.93 -0.31 0.05 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.61 7.15 -51.93 -0.37 0.24 16 45 H 0.10 0.62 6.12 -51.93 -0.32 0.31 16 LS Contribution 375.55 15.07 5.66 5.66 Total: -1.00 -34.24 375.55 -6.84 -41.09 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -5.88 Total: -1.25 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -2.40 Total: -2.44 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 1.35 Total: -32.67 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.54 Total: -25.57 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.24 -6.84 -41.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188023595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.414 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds