Wall clock time and date at job start Tue Mar 31 2020 17:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47073 * 2 1 4 4 H 1.09000 * 109.46865 * 55.00101 * 3 2 1 5 5 C 1.50707 * 109.46853 * 174.99679 * 3 2 1 6 6 H 1.07997 * 119.99533 * 120.00494 * 5 3 2 7 7 C 1.37871 * 120.00135 * 299.99881 * 5 3 2 8 8 N 1.31513 * 120.00071 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00098 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46883 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47060 * 120.00012 * 9 7 5 12 12 H 1.48493 * 109.47314 * 240.00279 * 9 7 5 13 13 O 1.45192 * 109.47147 * 294.99766 * 3 2 1 14 14 C 1.34230 * 117.00018 * 90.00298 * 13 3 2 15 15 O 1.20826 * 120.00015 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00046 * 180.02562 * 14 13 3 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47466 * 179.97438 * 17 16 14 19 19 C 1.35691 * 119.93133 * 94.72793 * 18 17 16 20 20 C 1.50700 * 119.38477 * 359.97438 * 19 18 17 21 21 N 1.35520 * 121.22544 * 179.72086 * 19 18 17 22 22 H 0.96998 * 119.47691 * 180.26355 * 21 19 18 23 23 C 1.34662 * 121.04678 * 0.55968 * 21 19 18 24 24 O 1.21897 * 120.10613 * 179.74642 * 23 21 19 25 25 C 1.41942 * 119.78499 * 359.72480 * 23 21 19 26 26 C 1.43204 * 120.57964 * 179.97438 * 25 23 21 27 27 N 9.93430 * 100.57028 * 145.81660 * 3 1 2 28 28 C 1.39259 * 118.83645 * 359.97438 * 25 23 21 29 29 C 1.50697 * 120.51389 * 179.97438 * 28 25 23 30 30 H 1.09001 * 109.47147 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47371 * 300.00362 * 1 2 3 32 32 H 1.09003 * 109.47087 * 60.00261 * 1 2 3 33 33 H 1.09001 * 109.47371 * 239.99638 * 2 1 3 34 34 H 1.09003 * 109.47087 * 119.99738 * 2 1 3 35 35 H 0.97002 * 119.99847 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47060 * 299.99765 * 16 14 13 37 37 H 1.09001 * 109.47380 * 59.99853 * 16 14 13 38 38 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 39 39 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 40 40 H 1.09011 * 109.46798 * 90.00535 * 20 19 18 41 41 H 1.09002 * 109.47341 * 210.00087 * 20 19 18 42 42 H 1.08994 * 109.47609 * 330.00535 * 20 19 18 43 43 H 1.09006 * 109.47215 * 270.02142 * 29 28 25 44 44 H 1.09004 * 109.47547 * 30.02370 * 29 28 25 45 45 H 1.09001 * 109.47356 * 150.02617 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8784 1.2280 8 7 3.4061 0.3367 2.1729 9 14 6.0049 0.8812 1.3820 10 1 6.5986 1.5473 0.1949 11 1 6.3988 1.6167 2.6104 12 1 6.4970 -0.5174 1.4632 13 8 1.6559 2.0916 -1.2406 14 6 0.4727 2.7255 -1.2559 15 8 -0.2193 2.7370 -0.2656 16 6 0.0070 3.4216 -2.5088 17 6 -1.3616 4.0584 -2.2596 18 6 -1.8272 4.7551 -3.5121 19 6 -2.6413 4.1083 -4.3839 20 6 -3.0701 2.6947 -4.0856 21 7 -3.0801 4.7116 -5.5153 22 1 -3.6645 4.2269 -6.1189 23 6 -2.7129 5.9714 -5.8177 24 8 -3.1141 6.4959 -6.8424 25 6 -1.8576 6.6868 -4.9394 26 6 -1.4561 8.0270 -5.2445 27 7 -1.1365 9.0908 -5.4868 28 6 -1.4159 6.0623 -3.7756 29 6 -0.5064 6.7864 -2.8167 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8292 -0.0611 2.9499 36 1 0.7240 4.1958 -2.7822 37 1 -0.0720 2.6970 -3.3192 38 1 -2.0784 3.2840 -1.9864 39 1 -1.2832 4.7830 -1.4491 40 1 -3.9956 2.7096 -3.5099 41 1 -3.2327 2.1593 -5.0210 42 1 -2.2923 2.1928 -3.5101 43 1 0.5322 6.6005 -3.0903 44 1 -0.7082 7.8566 -2.8623 45 1 -0.6853 6.4258 -1.8037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188023595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:06 Heat of formation + Delta-G solvation = -109.640132 kcal Electronic energy + Delta-G solvation = -28176.150096 eV Core-core repulsion = 24157.679399 eV Total energy + Delta-G solvation = -4018.470697 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.63619 -41.20398 -39.07332 -37.93230 -37.58626 -36.12585 -35.39567 -34.58792 -33.26265 -31.57933 -29.94300 -29.33835 -28.74643 -25.88632 -24.85636 -23.81157 -22.98970 -22.24793 -21.02101 -20.08899 -19.09799 -18.77262 -18.26192 -17.82136 -17.20722 -17.08169 -16.86915 -16.67147 -16.19750 -15.30945 -14.95181 -14.79036 -14.76690 -14.69008 -14.50633 -14.36763 -14.07459 -14.05530 -13.83363 -13.53425 -13.35290 -13.29802 -13.22533 -13.07624 -12.97001 -12.75122 -12.69637 -12.54496 -12.40165 -12.29916 -12.09434 -11.78113 -11.64581 -11.35343 -11.31866 -11.07766 -10.86375 -10.71392 -10.44803 -9.05147 -8.22856 -6.38055 -0.70051 0.60347 1.41180 1.43767 1.45165 1.57263 1.60223 1.68090 1.88955 2.22219 2.49989 2.66021 2.96472 3.07326 3.36447 3.39567 3.69236 3.82325 4.04379 4.18870 4.31774 4.41061 4.43458 4.49954 4.53053 4.59499 4.66774 4.75132 4.76690 4.78070 4.89262 4.92818 4.97066 5.09355 5.21132 5.22616 5.26292 5.33833 5.41427 5.53457 5.60028 5.63278 5.71511 5.78492 6.10878 6.30381 6.49529 6.68884 6.80899 7.17108 7.36500 8.83315 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.002589 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.623615 B =10810.584796 C =11859.017919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.132 4.132 3 C 0.227 3.773 4 H 0.009 0.991 5 C -0.547 4.547 6 H 0.063 0.937 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.972 3.028 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.274 1.274 13 O -0.370 6.370 14 C 0.443 3.557 15 O -0.541 6.541 16 C -0.107 4.107 17 C -0.048 4.048 18 C -0.209 4.209 19 C 0.247 3.753 20 C -0.146 4.146 21 N -0.580 5.580 22 H 0.437 0.563 23 C 0.545 3.455 24 O -0.589 6.589 25 C -0.227 4.227 26 C 0.299 3.701 27 N -0.477 5.477 28 C 0.132 3.868 29 C -0.150 4.150 30 H 0.057 0.943 31 H 0.035 0.965 32 H 0.049 0.951 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.268 0.732 36 H 0.114 0.886 37 H 0.129 0.871 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.122 0.878 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.069 0.931 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.112 0.683 -10.846 17.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.170 4.170 3 C 0.173 3.827 4 H 0.026 0.974 5 C -0.584 4.584 6 H 0.081 0.919 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.797 3.203 10 H -0.189 1.189 11 H -0.204 1.204 12 H -0.200 1.200 13 O -0.286 6.286 14 C 0.288 3.712 15 O -0.432 6.432 16 C -0.145 4.145 17 C -0.085 4.085 18 C -0.213 4.213 19 C 0.133 3.867 20 C -0.202 4.202 21 N -0.211 5.211 22 H 0.279 0.721 23 C 0.345 3.655 24 O -0.474 6.474 25 C -0.235 4.235 26 C -0.014 4.014 27 N -0.155 5.155 28 C 0.125 3.875 29 C -0.206 4.206 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.133 0.867 37 H 0.147 0.853 38 H 0.122 0.878 39 H 0.105 0.895 40 H 0.140 0.860 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.088 0.912 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.957 2.635 -11.323 18.164 hybrid contribution 0.673 -0.306 0.304 0.800 sum -13.284 2.329 -11.019 17.415 Atomic orbital electron populations 1.21699 0.95638 1.00548 1.00612 1.21856 0.95076 0.98050 1.01994 1.20257 0.93985 0.89379 0.79055 0.97352 1.21402 0.91180 1.39344 1.06498 0.91855 1.25699 1.03602 0.94186 0.94651 1.70010 1.37057 1.38215 1.09868 0.85284 0.78625 0.78162 0.78264 1.18893 1.20448 1.19951 1.86464 1.36853 1.63222 1.42088 1.24476 0.79227 0.76156 0.91365 1.90613 1.55743 1.59267 1.37601 1.21563 0.98825 1.01409 0.92664 1.20207 0.94751 1.00429 0.93145 1.18656 1.07493 0.94228 1.00939 1.21106 0.87481 0.95496 0.82660 1.21593 1.05501 0.86827 1.06258 1.43305 1.42662 1.13844 1.21274 0.72098 1.16510 0.81695 0.81475 0.85816 1.90985 1.59453 1.68266 1.28651 1.16492 1.14852 0.90359 1.01799 1.25129 0.91980 0.92154 0.92181 1.81236 1.11927 1.13053 1.09314 1.20635 0.85978 0.91923 0.88967 1.21358 0.99578 1.00220 0.99450 0.92404 0.94594 0.93173 0.93766 0.90248 0.92231 0.86748 0.85292 0.87805 0.89524 0.85976 0.87085 0.87387 0.87424 0.91185 0.87541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 8.56 71.98 0.62 -4.14 16 2 C -0.13 -6.01 5.49 30.59 0.17 -5.84 16 3 C 0.23 11.22 2.25 29.85 0.07 11.29 16 4 H 0.01 0.49 7.16 -2.39 -0.02 0.47 16 5 C -0.55 -29.24 8.90 25.60 0.23 -29.01 16 6 H 0.06 3.35 7.81 -2.91 -0.02 3.33 16 7 C 0.02 0.97 5.29 84.65 0.45 1.42 16 8 N -0.91 -50.05 11.29 21.45 0.24 -49.81 16 9 Si 0.97 41.31 29.54 68.60 2.03 43.34 16 10 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 11 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 12 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 13 O -0.37 -15.14 9.81 -51.41 -0.50 -15.65 16 14 C 0.44 13.92 6.41 71.24 0.46 14.38 16 15 O -0.54 -19.78 13.12 21.97 0.29 -19.49 16 16 C -0.11 -1.79 5.69 29.85 0.17 -1.62 16 17 C -0.05 -0.58 3.46 29.85 0.10 -0.47 16 18 C -0.21 -2.08 5.09 -20.14 -0.10 -2.18 16 19 C 0.25 1.49 6.80 41.40 0.28 1.77 16 20 C -0.15 0.06 9.19 71.24 0.65 0.72 16 21 N -0.58 -5.38 5.22 -306.53 -1.60 -6.98 16 22 H 0.44 1.66 8.75 -92.71 -0.81 0.85 16 23 C 0.54 10.95 7.72 85.18 0.66 11.61 16 24 O -0.59 -17.25 17.39 -4.98 -0.09 -17.34 16 25 C -0.23 -4.62 5.79 -20.87 -0.12 -4.74 16 26 C 0.30 8.09 13.49 88.32 1.19 9.29 16 27 N -0.48 -15.12 18.54 19.02 0.35 -14.76 16 28 C 0.13 1.89 5.96 -19.30 -0.12 1.78 16 29 C -0.15 -2.01 9.12 71.24 0.65 -1.36 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.03 1.45 7.80 -2.39 -0.02 1.43 16 32 H 0.05 1.65 6.06 -2.39 -0.01 1.64 16 33 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.08 4.09 5.95 -2.39 -0.01 4.08 16 35 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 36 H 0.11 1.69 8.00 -2.39 -0.02 1.67 16 37 H 0.13 1.45 7.77 -2.39 -0.02 1.43 16 38 H 0.10 1.04 6.29 -2.39 -0.01 1.03 16 39 H 0.09 1.22 6.19 -2.39 -0.01 1.20 16 40 H 0.12 -0.35 8.14 -2.38 -0.02 -0.37 16 41 H 0.11 -0.48 8.14 -2.39 -0.02 -0.50 16 42 H 0.11 0.09 6.03 -2.39 -0.01 0.07 16 43 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.07 1.08 7.15 -2.38 -0.02 1.07 16 45 H 0.11 1.21 6.12 -2.39 -0.01 1.19 16 Total: -1.00 -79.17 375.55 6.31 -72.85 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 0.24 Total: 4.95 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 5.35 Total: 2.88 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -1.01 Total: -71.55 kcal Atomic # 8 Polarization: -52.17 SS G_CDS: -0.30 Total: -52.47 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -79.17 6.31 -72.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188023595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.787 kcal (2) G-P(sol) polarization free energy of solvation -79.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds