Wall clock time and date at job start Tue Mar 31 2020 17:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47084 * 2 1 4 4 H 1.09005 * 109.47320 * 304.99941 * 3 2 1 5 5 C 1.50704 * 109.47317 * 184.99875 * 3 2 1 6 6 H 1.08005 * 119.99918 * 239.99811 * 5 3 2 7 7 C 1.37877 * 119.99751 * 59.99954 * 5 3 2 8 8 N 1.31512 * 120.00175 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99613 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47518 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46925 * 120.00275 * 9 7 5 12 12 H 1.48500 * 109.46789 * 239.99694 * 9 7 5 13 13 O 1.45202 * 109.47416 * 64.99868 * 3 2 1 14 14 C 1.34228 * 116.99961 * 270.00713 * 13 3 2 15 15 O 1.20818 * 120.00210 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99729 * 180.02562 * 14 13 3 17 17 C 1.53008 * 109.46823 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.46802 * 179.97438 * 17 16 14 19 19 C 1.35681 * 119.93595 * 94.97490 * 18 17 16 20 20 C 1.50704 * 119.38757 * 0.04072 * 19 18 17 21 21 N 1.35517 * 121.22960 * 180.02562 * 19 18 17 22 22 H 0.97003 * 119.47891 * 179.97438 * 21 19 18 23 23 C 1.34655 * 121.04801 * 359.73226 * 21 19 18 24 24 O 1.21900 * 120.11123 * 180.26306 * 23 21 19 25 25 C 1.41947 * 119.78413 * 0.52342 * 23 21 19 26 26 C 1.43205 * 120.58087 * 179.76180 * 25 23 21 27 27 N 9.93460 * 66.87943 * 235.36135 * 3 1 2 28 28 C 1.39252 * 118.83176 * 359.48470 * 25 23 21 29 29 C 1.50708 * 120.51441 * 180.26940 * 28 25 23 30 30 H 1.08994 * 109.47168 * 300.00078 * 1 2 3 31 31 H 1.08998 * 109.46862 * 60.00145 * 1 2 3 32 32 H 1.08998 * 109.46917 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47334 * 240.00361 * 2 1 3 34 34 H 1.08999 * 109.47602 * 119.99798 * 2 1 3 35 35 H 0.96997 * 120.00190 * 179.97438 * 8 7 5 36 36 H 1.08994 * 109.47645 * 59.99090 * 16 14 13 37 37 H 1.09000 * 109.46772 * 299.99060 * 16 14 13 38 38 H 1.08994 * 109.47615 * 59.99241 * 17 16 14 39 39 H 1.09000 * 109.46818 * 299.99202 * 17 16 14 40 40 H 1.09000 * 109.47043 * 89.99893 * 20 19 18 41 41 H 1.08997 * 109.47453 * 209.99797 * 20 19 18 42 42 H 1.09001 * 109.46692 * 330.00511 * 20 19 18 43 43 H 1.09002 * 109.46882 * 0.02562 * 29 28 25 44 44 H 1.09000 * 109.46735 * 120.00228 * 29 28 25 45 45 H 1.08995 * 109.47399 * 239.99982 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5420 1.4444 -0.1238 6 1 4.1472 1.8890 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4063 0.3375 -2.1733 9 14 6.0050 0.8814 -1.3817 10 1 6.5987 1.5475 -0.1948 11 1 6.4971 -0.5173 -1.4629 12 1 6.3989 1.6168 -2.6102 13 8 1.6559 2.0917 1.2407 14 6 0.4727 2.7254 1.2559 15 8 -0.2189 2.7376 0.2654 16 6 0.0074 3.4226 2.5084 17 6 -1.3609 4.0601 2.2588 18 6 -1.8264 4.7568 3.5114 19 6 -1.5972 6.0843 3.6728 20 6 -0.8773 6.8474 2.5909 21 7 -2.0038 6.7369 4.7887 22 1 -1.8262 7.6864 4.8779 23 6 -2.6547 6.0893 5.7737 24 8 -3.0170 6.6942 6.7681 25 6 -2.9128 4.6987 5.6528 26 6 -3.5991 3.9920 6.6922 27 7 -4.1435 3.4305 7.5172 28 6 -2.4919 4.0351 4.5032 29 6 -2.7514 2.5603 4.3326 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8293 -0.0603 -2.9502 36 1 0.7244 4.1969 2.7809 37 1 -0.0712 2.6986 3.3194 38 1 -2.0781 3.2861 1.9860 39 1 -1.2819 4.7843 1.4479 40 1 -1.6032 7.2415 1.8797 41 1 -0.3209 7.6719 3.0366 42 1 -0.1872 6.1807 2.0739 43 1 -3.2792 2.1807 5.2076 44 1 -3.3604 2.3991 3.4431 45 1 -1.8028 2.0347 4.2237 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188023619.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:12 Heat of formation + Delta-G solvation = -89.403656 kcal Electronic energy + Delta-G solvation = -28182.808508 eV Core-core repulsion = 24165.215330 eV Total energy + Delta-G solvation = -4017.593178 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.94979 -39.78671 -38.24217 -37.06560 -36.09992 -35.27311 -33.82651 -33.55246 -31.49190 -30.87174 -29.24553 -28.39572 -27.31461 -24.84621 -23.31606 -22.94859 -22.38492 -20.75555 -19.50107 -19.33275 -18.40284 -17.17910 -17.07047 -16.67572 -16.27096 -15.96565 -15.79363 -15.39622 -14.58097 -14.39753 -14.23044 -14.13205 -13.91658 -13.58787 -13.35446 -13.27951 -13.12536 -12.99186 -12.82960 -12.72253 -12.48830 -12.19742 -12.06007 -11.91193 -11.72651 -11.51741 -11.32075 -11.22753 -11.09914 -11.02069 -10.70797 -10.53767 -10.33383 -10.21604 -9.86945 -9.67868 -9.43249 -8.86936 -8.52254 -8.34033 -6.25130 -4.32293 -0.07165 1.28480 2.16154 2.51586 2.70115 2.91206 3.18352 3.25840 3.29710 3.45067 3.58813 3.71697 3.85207 4.03974 4.25213 4.29703 4.58618 4.74474 4.83797 4.87359 4.92785 5.03853 5.07166 5.15539 5.27333 5.30132 5.41073 5.53965 5.56657 5.71904 5.80918 5.88294 5.97458 6.14878 6.16186 6.22331 6.36329 6.38974 6.79730 6.89471 7.09569 7.19793 7.41212 7.53684 7.55690 7.67260 7.88492 8.09520 8.55942 8.82310 9.33521 10.81536 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.002520 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.086643 B =11110.513693 C =11746.053307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C 0.222 3.778 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.909 3.091 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.357 6.357 14 C 0.450 3.550 15 O -0.517 6.517 16 C -0.118 4.118 17 C -0.055 4.055 18 C -0.201 4.201 19 C 0.211 3.789 20 C -0.142 4.142 21 N -0.598 5.598 22 H 0.421 0.579 23 C 0.545 3.455 24 O -0.539 6.539 25 C -0.188 4.188 26 C 0.285 3.715 27 N -0.425 5.425 28 C 0.108 3.892 29 C -0.142 4.142 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.032 0.968 33 H 0.108 0.892 34 H 0.041 0.959 35 H 0.266 0.734 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.889 11.153 7.087 15.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.736 3.264 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.273 6.273 14 C 0.292 3.708 15 O -0.408 6.408 16 C -0.156 4.156 17 C -0.093 4.093 18 C -0.206 4.206 19 C 0.098 3.902 20 C -0.198 4.198 21 N -0.229 5.229 22 H 0.260 0.740 23 C 0.344 3.656 24 O -0.420 6.420 25 C -0.196 4.196 26 C -0.030 4.030 27 N -0.102 5.102 28 C 0.101 3.899 29 C -0.198 4.198 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.103 0.897 42 H 0.125 0.875 43 H 0.092 0.908 44 H 0.116 0.884 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.150 10.405 8.537 16.857 hybrid contribution 1.230 0.537 -0.519 1.439 sum -8.921 10.942 8.018 16.235 Atomic orbital electron populations 1.21850 0.98337 0.99009 1.00687 1.22023 0.92671 0.99407 1.03372 1.20672 0.94981 0.88760 0.78633 0.93480 1.21082 0.89753 1.38951 1.06197 0.91326 1.24880 0.99197 0.94750 0.95102 1.69889 1.35312 1.37847 1.09461 0.86256 0.83957 0.77946 0.78211 1.19482 1.20709 1.20767 1.86480 1.34272 1.62359 1.44169 1.23205 0.80924 0.77147 0.89478 1.90617 1.55481 1.58678 1.36005 1.21392 0.97418 1.01053 0.95701 1.20254 0.95771 1.00481 0.92755 1.18812 1.09783 0.91929 1.00094 1.20642 0.90013 0.92798 0.86733 1.21364 1.01242 1.01095 0.96141 1.43460 1.48792 1.14329 1.16362 0.73956 1.16510 0.79126 0.87305 0.82690 1.91013 1.53298 1.68665 1.28999 1.16553 1.15149 0.92556 0.95338 1.24616 0.92905 0.93029 0.92448 1.81257 1.10516 1.09173 1.09238 1.20586 0.84254 0.96426 0.88630 1.21236 1.04315 0.89905 1.04344 0.94930 0.92802 0.94873 0.87395 0.94008 0.92414 0.88160 0.88233 0.89089 0.89082 0.88078 0.89655 0.87495 0.90821 0.88368 0.88378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.57 37.16 0.32 -2.49 16 2 C -0.14 -3.16 5.49 -26.73 -0.15 -3.31 16 3 C 0.22 5.42 2.25 -27.88 -0.06 5.36 16 4 H 0.05 1.28 7.16 -51.93 -0.37 0.90 16 5 C -0.52 -13.72 8.90 -34.44 -0.31 -14.03 16 6 H 0.07 1.79 7.81 -52.48 -0.41 1.38 16 7 C 0.06 1.64 5.29 -17.82 -0.09 1.55 16 8 N -0.89 -23.90 11.29 55.43 0.63 -23.27 16 9 Si 0.91 20.06 29.54 -169.99 -5.02 15.04 16 10 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 O -0.36 -7.44 9.81 -39.25 -0.38 -7.82 16 14 C 0.45 7.46 6.41 36.01 0.23 7.69 16 15 O -0.52 -9.74 13.13 -18.74 -0.25 -9.98 16 16 C -0.12 -1.19 5.70 -27.88 -0.16 -1.34 16 17 C -0.05 -0.43 3.48 -27.88 -0.10 -0.53 16 18 C -0.20 -1.35 5.09 -105.05 -0.54 -1.88 16 19 C 0.21 1.10 6.80 -81.88 -0.56 0.54 16 20 C -0.14 -0.39 9.20 36.01 0.33 -0.06 16 21 N -0.60 -3.73 5.22 -10.88 -0.06 -3.79 16 22 H 0.42 1.57 8.75 -40.82 -0.36 1.22 16 23 C 0.55 5.77 7.72 -14.89 -0.12 5.65 16 24 O -0.54 -7.84 17.39 5.01 0.09 -7.75 16 25 C -0.19 -1.96 5.79 -106.17 -0.62 -2.58 16 26 C 0.28 3.70 13.22 -22.45 -0.30 3.40 16 27 N -0.43 -6.35 18.54 41.87 0.78 -5.58 16 28 C 0.11 0.87 5.96 -103.75 -0.62 0.25 16 29 C -0.14 -1.01 8.84 36.01 0.32 -0.69 16 30 H 0.03 0.60 6.06 -51.93 -0.31 0.28 16 31 H 0.05 1.13 7.80 -51.93 -0.40 0.72 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.11 2.76 5.95 -51.93 -0.31 2.45 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.10 0.83 7.80 -51.93 -0.41 0.43 16 37 H 0.10 0.88 6.87 -51.93 -0.36 0.52 16 38 H 0.09 0.76 6.87 -51.93 -0.36 0.40 16 39 H 0.09 0.67 6.27 -51.93 -0.33 0.35 16 40 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.08 0.10 8.14 -51.93 -0.42 -0.33 16 42 H 0.11 0.39 6.06 -51.93 -0.31 0.07 16 43 H 0.07 0.59 6.53 -51.93 -0.34 0.25 16 44 H 0.10 0.59 7.57 -51.93 -0.39 0.20 16 45 H 0.10 0.64 6.87 -51.93 -0.36 0.28 16 LS Contribution 374.17 15.07 5.64 5.64 Total: -1.00 -34.17 374.17 -6.83 -41.00 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.84 Total: -1.02 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -2.40 Total: -2.47 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 1.35 Total: -32.63 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.54 Total: -25.55 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.17 -6.83 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188023619.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.408 kcal (2) G-P(sol) polarization free energy of solvation -34.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds