Wall clock time and date at job start Tue Mar 31 2020 17:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47084 * 2 1 4 4 H 1.09005 * 109.47320 * 304.99941 * 3 2 1 5 5 C 1.50704 * 109.47317 * 184.99875 * 3 2 1 6 6 H 1.08005 * 119.99918 * 239.99811 * 5 3 2 7 7 C 1.37877 * 119.99751 * 59.99954 * 5 3 2 8 8 N 1.31512 * 120.00175 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99613 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47518 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46925 * 120.00275 * 9 7 5 12 12 H 1.48500 * 109.46789 * 239.99694 * 9 7 5 13 13 O 1.45202 * 109.47416 * 64.99868 * 3 2 1 14 14 C 1.34228 * 116.99961 * 270.00713 * 13 3 2 15 15 O 1.20818 * 120.00210 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99729 * 180.02562 * 14 13 3 17 17 C 1.53008 * 109.46823 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.46802 * 179.97438 * 17 16 14 19 19 C 1.35681 * 119.93595 * 94.97490 * 18 17 16 20 20 C 1.50704 * 119.38757 * 0.04072 * 19 18 17 21 21 N 1.35517 * 121.22960 * 180.02562 * 19 18 17 22 22 H 0.97003 * 119.47891 * 179.97438 * 21 19 18 23 23 C 1.34655 * 121.04801 * 359.73226 * 21 19 18 24 24 O 1.21900 * 120.11123 * 180.26306 * 23 21 19 25 25 C 1.41947 * 119.78413 * 0.52342 * 23 21 19 26 26 C 1.43205 * 120.58087 * 179.76180 * 25 23 21 27 27 N 9.93460 * 66.87943 * 235.36135 * 3 1 2 28 28 C 1.39252 * 118.83176 * 359.48470 * 25 23 21 29 29 C 1.50708 * 120.51441 * 180.26940 * 28 25 23 30 30 H 1.08994 * 109.47168 * 300.00078 * 1 2 3 31 31 H 1.08998 * 109.46862 * 60.00145 * 1 2 3 32 32 H 1.08998 * 109.46917 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47334 * 240.00361 * 2 1 3 34 34 H 1.08999 * 109.47602 * 119.99798 * 2 1 3 35 35 H 0.96997 * 120.00190 * 179.97438 * 8 7 5 36 36 H 1.08994 * 109.47645 * 59.99090 * 16 14 13 37 37 H 1.09000 * 109.46772 * 299.99060 * 16 14 13 38 38 H 1.08994 * 109.47615 * 59.99241 * 17 16 14 39 39 H 1.09000 * 109.46818 * 299.99202 * 17 16 14 40 40 H 1.09000 * 109.47043 * 89.99893 * 20 19 18 41 41 H 1.08997 * 109.47453 * 209.99797 * 20 19 18 42 42 H 1.09001 * 109.46692 * 330.00511 * 20 19 18 43 43 H 1.09002 * 109.46882 * 0.02562 * 29 28 25 44 44 H 1.09000 * 109.46735 * 120.00228 * 29 28 25 45 45 H 1.08995 * 109.47399 * 239.99982 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5420 1.4444 -0.1238 6 1 4.1472 1.8890 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4063 0.3375 -2.1733 9 14 6.0050 0.8814 -1.3817 10 1 6.5987 1.5475 -0.1948 11 1 6.4971 -0.5173 -1.4629 12 1 6.3989 1.6168 -2.6102 13 8 1.6559 2.0917 1.2407 14 6 0.4727 2.7254 1.2559 15 8 -0.2189 2.7376 0.2654 16 6 0.0074 3.4226 2.5084 17 6 -1.3609 4.0601 2.2588 18 6 -1.8264 4.7568 3.5114 19 6 -1.5972 6.0843 3.6728 20 6 -0.8773 6.8474 2.5909 21 7 -2.0038 6.7369 4.7887 22 1 -1.8262 7.6864 4.8779 23 6 -2.6547 6.0893 5.7737 24 8 -3.0170 6.6942 6.7681 25 6 -2.9128 4.6987 5.6528 26 6 -3.5991 3.9920 6.6922 27 7 -4.1435 3.4305 7.5172 28 6 -2.4919 4.0351 4.5032 29 6 -2.7514 2.5603 4.3326 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8293 -0.0603 -2.9502 36 1 0.7244 4.1969 2.7809 37 1 -0.0712 2.6986 3.3194 38 1 -2.0781 3.2861 1.9860 39 1 -1.2819 4.7843 1.4479 40 1 -1.6032 7.2415 1.8797 41 1 -0.3209 7.6719 3.0366 42 1 -0.1872 6.1807 2.0739 43 1 -3.2792 2.1807 5.2076 44 1 -3.3604 2.3991 3.4431 45 1 -1.8028 2.0347 4.2237 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188023619.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:10 Heat of formation + Delta-G solvation = -110.449855 kcal Electronic energy + Delta-G solvation = -28183.721139 eV Core-core repulsion = 24165.215330 eV Total energy + Delta-G solvation = -4018.505810 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.63727 -41.20393 -39.06905 -37.95169 -37.58733 -36.11358 -35.39478 -34.58473 -33.27133 -31.59080 -29.92622 -29.34714 -28.76097 -25.87390 -24.85496 -23.81883 -22.99333 -22.25978 -21.02430 -20.08444 -19.11268 -18.75556 -18.27693 -17.81961 -17.16707 -17.11165 -16.86575 -16.67588 -16.19043 -15.28409 -14.93851 -14.84666 -14.74913 -14.73061 -14.46587 -14.32062 -14.14925 -14.03512 -13.86753 -13.47303 -13.34525 -13.27667 -13.21487 -13.11310 -12.97004 -12.74751 -12.69631 -12.59851 -12.41443 -12.31167 -12.08354 -11.79952 -11.66137 -11.36322 -11.32169 -11.07088 -10.85548 -10.71562 -10.44928 -9.05512 -8.22069 -6.37446 -0.69451 0.59943 1.40950 1.44815 1.46220 1.58348 1.60394 1.68161 1.88718 2.22403 2.50519 2.65773 2.95964 3.08167 3.36330 3.39124 3.69372 3.82941 4.05240 4.18093 4.29655 4.41080 4.42130 4.48092 4.50596 4.57988 4.67084 4.74291 4.75232 4.80599 4.92164 4.92614 4.96274 5.13414 5.20122 5.20463 5.23274 5.31724 5.39320 5.51466 5.60092 5.62731 5.71500 5.77410 6.10119 6.30437 6.49438 6.69555 6.80602 7.17362 7.36943 8.84229 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.002520 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.086643 B =11110.513693 C =11746.053307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.132 4.132 3 C 0.227 3.773 4 H 0.011 0.989 5 C -0.545 4.545 6 H 0.065 0.935 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.974 3.026 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.277 1.277 13 O -0.370 6.370 14 C 0.443 3.557 15 O -0.541 6.541 16 C -0.108 4.108 17 C -0.047 4.047 18 C -0.208 4.208 19 C 0.245 3.755 20 C -0.146 4.146 21 N -0.581 5.581 22 H 0.436 0.564 23 C 0.544 3.456 24 O -0.589 6.589 25 C -0.226 4.226 26 C 0.299 3.701 27 N -0.478 5.478 28 C 0.133 3.867 29 C -0.146 4.146 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.268 0.732 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.122 0.878 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.060 0.940 44 H 0.113 0.887 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.899 12.455 6.485 16.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.171 4.171 3 C 0.174 3.826 4 H 0.029 0.971 5 C -0.583 4.583 6 H 0.083 0.917 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.798 3.202 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.203 1.203 13 O -0.286 6.286 14 C 0.288 3.712 15 O -0.432 6.432 16 C -0.145 4.145 17 C -0.084 4.084 18 C -0.213 4.213 19 C 0.131 3.869 20 C -0.202 4.202 21 N -0.211 5.211 22 H 0.279 0.721 23 C 0.345 3.655 24 O -0.474 6.474 25 C -0.234 4.234 26 C -0.014 4.014 27 N -0.156 5.156 28 C 0.125 3.875 29 C -0.202 4.202 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.144 0.856 37 H 0.135 0.865 38 H 0.107 0.893 39 H 0.119 0.881 40 H 0.140 0.860 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.079 0.921 44 H 0.132 0.868 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.164 11.731 7.925 16.864 hybrid contribution 0.941 0.221 -0.479 1.079 sum -8.223 11.952 7.446 16.307 Atomic orbital electron populations 1.21700 0.95880 1.00424 1.00547 1.21870 0.94842 0.98400 1.01947 1.20252 0.94078 0.89171 0.79101 0.97105 1.21396 0.91050 1.39369 1.06485 0.91691 1.25720 1.03675 0.94161 0.94651 1.70011 1.37116 1.38240 1.09878 0.85266 0.78515 0.78081 0.78357 1.18728 1.20227 1.20295 1.86467 1.36825 1.63215 1.42130 1.24466 0.79200 0.76226 0.91330 1.90611 1.55640 1.59310 1.37625 1.21572 0.98977 1.01564 0.92409 1.20179 0.94297 1.00667 0.93292 1.18650 1.10680 0.92427 0.99504 1.21089 0.87207 0.92472 0.86124 1.21580 1.01602 1.01572 0.95436 1.43306 1.47213 1.15073 1.15554 0.72143 1.16530 0.79001 0.87288 0.82713 1.90986 1.55649 1.69602 1.31131 1.16523 1.18040 0.92783 0.96077 1.25106 0.91978 0.92146 0.92153 1.81238 1.12704 1.10800 1.10815 1.20655 0.82512 0.96718 0.87587 1.21332 1.05008 0.89408 1.04461 0.93488 0.94387 0.92654 0.90152 0.93951 0.92244 0.85601 0.86453 0.89316 0.88075 0.86023 0.87175 0.87516 0.92088 0.86848 0.87224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 8.57 71.98 0.62 -4.37 16 2 C -0.13 -6.16 5.49 30.59 0.17 -5.99 16 3 C 0.23 11.23 2.25 29.85 0.07 11.30 16 4 H 0.01 0.62 7.16 -2.38 -0.02 0.60 16 5 C -0.55 -28.89 8.90 25.60 0.23 -28.67 16 6 H 0.06 3.39 7.81 -2.91 -0.02 3.37 16 7 C 0.02 0.92 5.29 84.66 0.45 1.37 16 8 N -0.91 -49.94 11.29 21.45 0.24 -49.70 16 9 Si 0.97 40.82 29.54 68.60 2.03 42.84 16 10 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 11 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 12 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 13 O -0.37 -15.12 9.81 -51.40 -0.50 -15.62 16 14 C 0.44 13.90 6.41 71.24 0.46 14.35 16 15 O -0.54 -19.72 13.13 21.99 0.29 -19.44 16 16 C -0.11 -1.79 5.70 29.85 0.17 -1.62 16 17 C -0.05 -0.56 3.48 29.85 0.10 -0.45 16 18 C -0.21 -2.06 5.09 -20.14 -0.10 -2.16 16 19 C 0.25 1.57 6.80 41.40 0.28 1.86 16 20 C -0.15 -0.07 9.20 71.24 0.66 0.58 16 21 N -0.58 -5.57 5.22 -306.53 -1.60 -7.17 16 22 H 0.44 1.86 8.75 -92.71 -0.81 1.05 16 23 C 0.54 10.99 7.72 85.18 0.66 11.65 16 24 O -0.59 -17.31 17.39 -4.99 -0.09 -17.39 16 25 C -0.23 -4.57 5.79 -20.87 -0.12 -4.69 16 26 C 0.30 8.04 13.22 88.32 1.17 9.20 16 27 N -0.48 -14.98 18.54 19.02 0.35 -14.63 16 28 C 0.13 1.84 5.96 -19.30 -0.11 1.73 16 29 C -0.15 -1.82 8.84 71.24 0.63 -1.19 16 30 H 0.05 1.66 6.06 -2.39 -0.01 1.64 16 31 H 0.04 1.58 7.80 -2.39 -0.02 1.56 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 4.19 5.95 -2.39 -0.01 4.18 16 34 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 36 H 0.13 1.52 7.80 -2.39 -0.02 1.50 16 37 H 0.12 1.62 6.87 -2.39 -0.02 1.60 16 38 H 0.09 1.17 6.87 -2.39 -0.02 1.16 16 39 H 0.10 1.07 6.27 -2.39 -0.01 1.06 16 40 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 41 H 0.11 -0.37 8.14 -2.39 -0.02 -0.39 16 42 H 0.11 0.23 6.06 -2.39 -0.01 0.21 16 43 H 0.06 0.95 6.53 -2.39 -0.02 0.93 16 44 H 0.11 1.09 7.57 -2.39 -0.02 1.07 16 45 H 0.11 1.13 6.87 -2.39 -0.02 1.12 16 Total: -1.00 -78.54 374.17 6.27 -72.27 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 0.24 Total: 5.94 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 5.31 Total: 2.90 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -1.01 Total: -71.50 kcal Atomic # 8 Polarization: -52.15 SS G_CDS: -0.30 Total: -52.45 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.84 kcal Total: -78.54 6.27 -72.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188023619.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.184 kcal (2) G-P(sol) polarization free energy of solvation -78.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds