Wall clock time and date at job start Tue Mar 31 2020 17:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46988 * 2 1 4 4 H 1.08997 * 109.47063 * 304.99715 * 3 2 1 5 5 C 1.50700 * 109.46998 * 185.00153 * 3 2 1 6 6 H 1.08004 * 119.99331 * 240.00094 * 5 3 2 7 7 C 1.37872 * 120.00037 * 59.99931 * 5 3 2 8 8 N 1.31514 * 120.00401 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00007 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47011 * 89.99920 * 9 7 5 11 11 H 1.48490 * 109.47337 * 210.00159 * 9 7 5 12 12 H 1.48500 * 109.47109 * 330.00384 * 9 7 5 13 13 O 1.45197 * 109.47044 * 65.00070 * 3 2 1 14 14 C 1.34229 * 117.00253 * 269.99691 * 13 3 2 15 15 O 1.20826 * 119.99833 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00311 * 180.02562 * 14 13 3 17 17 N 1.46496 * 109.47119 * 180.02562 * 16 14 13 18 18 C 1.39284 * 125.81946 * 269.71659 * 17 16 14 19 19 C 1.38657 * 133.33119 * 0.22514 * 18 17 16 20 20 C 1.38109 * 119.84959 * 180.02562 * 19 18 17 21 21 C 1.38439 * 120.28270 * 359.97438 * 20 19 18 22 22 C 1.38102 * 120.28169 * 359.95754 * 21 20 19 23 23 C 1.38654 * 119.85378 * 0.09446 * 22 21 20 24 24 N 1.39289 * 133.33659 * 179.97438 * 23 22 21 25 25 C 1.46498 * 125.81581 * 359.97438 * 24 23 22 26 26 C 1.52995 * 109.47213 * 270.02208 * 25 24 23 27 27 C 1.34634 * 108.36313 * 179.97438 * 24 23 22 28 28 O 1.21686 * 125.16487 * 180.02562 * 27 24 23 29 29 H 1.08998 * 109.46928 * 60.00147 * 1 2 3 30 30 H 1.08999 * 109.46939 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46992 * 299.99743 * 1 2 3 32 32 H 1.08995 * 109.46992 * 240.00257 * 2 1 3 33 33 H 1.08998 * 109.46928 * 119.99852 * 2 1 3 34 34 H 0.96990 * 120.00224 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46706 * 60.00008 * 16 14 13 36 36 H 1.09005 * 109.46676 * 300.00008 * 16 14 13 37 37 H 1.07998 * 120.08019 * 0.02562 * 19 18 17 38 38 H 1.08000 * 119.85718 * 179.97438 * 20 19 18 39 39 H 1.08004 * 119.85660 * 179.97438 * 21 20 19 40 40 H 1.08008 * 120.07165 * 179.97438 * 22 21 20 41 41 H 1.08997 * 109.47485 * 30.02839 * 25 24 23 42 42 H 1.09003 * 109.46973 * 150.02480 * 25 24 23 43 43 H 1.09001 * 109.47578 * 180.02562 * 26 25 24 44 44 H 1.09006 * 109.47197 * 300.00544 * 26 25 24 45 45 H 1.09003 * 109.46929 * 60.00245 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3366 -2.1729 9 14 6.0050 0.8813 -1.3819 10 1 6.5549 -0.3501 -0.7602 11 1 6.3830 0.9225 -2.8173 12 1 6.5570 2.0739 -0.6902 13 8 1.6559 2.0917 1.2407 14 6 0.4728 2.7254 1.2560 15 8 -0.2192 2.7370 0.2656 16 6 0.0075 3.4226 2.5084 17 7 -1.3031 4.0321 2.2699 18 6 -1.5280 5.3240 1.8005 19 6 -0.6863 6.3630 1.4334 20 6 -1.2208 7.5590 0.9961 21 6 -2.5933 7.7247 0.9223 22 6 -3.4395 6.6952 1.2845 23 6 -2.9122 5.4911 1.7257 24 7 -3.4856 4.2953 2.1516 25 6 -4.9210 4.0155 2.2373 26 6 -5.4355 4.4088 3.6234 27 6 -2.4957 3.4405 2.4712 28 8 -2.6547 2.3051 2.8793 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0611 -2.9498 35 1 0.7246 4.1969 2.7809 36 1 -0.0711 2.6985 3.3194 37 1 0.3849 6.2373 1.4892 38 1 -0.5653 8.3684 0.7105 39 1 -3.0039 8.6631 0.5798 40 1 -4.5098 6.8283 1.2260 41 1 -5.4493 4.5907 1.4769 42 1 -5.0942 2.9518 2.0738 43 1 -6.5035 4.2002 3.6873 44 1 -4.9071 3.8336 4.3838 45 1 -5.2623 5.4725 3.7869 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188047866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:50 Heat of formation + Delta-G solvation = -58.726577 kcal Electronic energy + Delta-G solvation = -29202.304320 eV Core-core repulsion = 25186.041400 eV Total energy + Delta-G solvation = -4016.262920 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.58058 -39.63649 -38.38026 -36.48182 -35.98304 -35.42944 -33.54132 -32.14082 -31.35571 -30.66791 -28.95085 -28.28858 -27.08352 -24.17790 -23.24487 -22.63033 -22.47304 -21.31559 -20.22337 -19.47518 -18.08215 -17.62114 -17.42549 -16.66009 -16.19990 -16.10506 -15.68035 -15.41939 -14.97601 -14.69580 -14.39827 -14.37662 -14.17543 -13.79399 -13.34347 -13.04773 -12.99352 -12.83348 -12.66965 -12.50177 -12.20376 -11.81988 -11.49795 -11.44674 -11.38446 -11.24947 -11.17646 -10.98241 -10.87145 -10.62806 -10.58742 -10.47743 -10.30467 -9.79948 -9.63615 -9.38237 -8.82854 -8.51106 -8.46313 -7.84957 -6.19705 -4.27468 1.10112 1.26108 1.94458 2.82306 2.88931 3.07189 3.23553 3.29171 3.32658 3.56501 3.73530 4.31426 4.33693 4.46515 4.76249 4.80926 4.85413 4.96622 5.06760 5.08392 5.11949 5.21507 5.25420 5.35195 5.42295 5.53852 5.60402 5.68422 5.84380 5.94869 6.17337 6.27144 6.33930 6.34769 6.40232 6.48724 6.51098 6.68253 6.87771 6.99220 7.17928 7.23398 7.24410 7.59989 7.72572 7.91878 8.13701 8.16064 8.57090 8.84502 9.37683 10.86945 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017065 B = 0.003268 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.344331 B = 8564.684271 C = 9585.058042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.136 4.136 3 C 0.224 3.776 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.353 6.353 14 C 0.434 3.566 15 O -0.501 6.501 16 C 0.136 3.864 17 N -0.524 5.524 18 C 0.102 3.898 19 C -0.101 4.101 20 C -0.110 4.110 21 C -0.113 4.113 22 C -0.108 4.108 23 C 0.094 3.906 24 N -0.539 5.539 25 C 0.128 3.872 26 C -0.170 4.170 27 C 0.688 3.312 28 O -0.549 6.549 29 H 0.050 0.950 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.109 0.891 33 H 0.042 0.958 34 H 0.267 0.733 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.328 14.659 9.312 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.171 3.829 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.739 3.261 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.269 6.269 14 C 0.274 3.726 15 O -0.389 6.389 16 C 0.013 3.987 17 N -0.245 5.245 18 C 0.001 3.999 19 C -0.122 4.122 20 C -0.130 4.130 21 C -0.133 4.133 22 C -0.129 4.129 23 C -0.007 4.007 24 N -0.261 5.261 25 C 0.007 3.993 26 C -0.228 4.228 27 C 0.392 3.608 28 O -0.424 6.424 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.127 0.873 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.618 13.564 9.139 21.936 hybrid contribution 0.898 -0.243 -0.384 1.007 sum -13.720 13.321 8.754 21.032 Atomic orbital electron populations 1.21841 0.98235 0.99082 1.00727 1.22026 0.92665 0.99269 1.03384 1.20714 0.95010 0.88780 0.78359 0.93546 1.21029 0.89528 1.39165 1.06291 0.91263 1.24894 0.99278 0.94733 0.95044 1.69892 1.35419 1.37676 1.09476 0.86272 0.83813 0.78697 0.77340 1.20332 1.20983 1.19606 1.86458 1.33557 1.62342 1.44530 1.23438 0.81558 0.77934 0.89647 1.90651 1.55172 1.57758 1.35355 1.20944 0.81997 0.99754 0.96023 1.44626 1.06099 1.11893 1.61891 1.18055 0.93092 0.86404 1.02355 1.20150 0.99323 0.91443 1.01272 1.20845 0.95253 0.96653 1.00271 1.20821 0.93129 0.98446 1.00912 1.19993 1.00093 0.90342 1.02484 1.18053 0.90293 0.89076 1.03287 1.45147 1.06932 1.11877 1.62134 1.21526 0.75960 1.03276 0.98545 1.22177 1.01624 1.02215 0.96763 1.15859 0.79983 0.84284 0.80700 1.91036 1.83172 1.15270 1.52898 0.93076 0.94801 0.94849 0.87315 0.93894 0.92353 0.85478 0.85230 0.85140 0.84994 0.85153 0.85502 0.89318 0.88844 0.90722 0.91839 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.57 37.16 0.32 -3.03 16 2 C -0.14 -3.48 5.49 -26.73 -0.15 -3.62 16 3 C 0.22 5.99 2.25 -27.88 -0.06 5.93 16 4 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -14.54 8.90 -34.44 -0.31 -14.84 16 6 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.15 11.29 55.43 0.63 -24.53 16 9 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 O -0.35 -8.32 9.81 -39.25 -0.38 -8.71 16 14 C 0.43 9.13 6.48 36.01 0.23 9.36 16 15 O -0.50 -12.04 13.57 -18.75 -0.25 -12.30 16 16 C 0.14 2.12 6.57 -5.19 -0.03 2.08 16 17 N -0.52 -8.44 2.27 -120.20 -0.27 -8.71 16 18 C 0.10 1.44 6.83 -83.80 -0.57 0.87 16 19 C -0.10 -1.19 10.02 -39.47 -0.40 -1.59 16 20 C -0.11 -1.04 10.03 -39.55 -0.40 -1.44 16 21 C -0.11 -0.97 10.03 -39.56 -0.40 -1.36 16 22 C -0.11 -1.04 10.02 -39.48 -0.40 -1.43 16 23 C 0.09 1.21 6.83 -83.80 -0.57 0.63 16 24 N -0.54 -7.43 2.78 -118.91 -0.33 -7.76 16 25 C 0.13 1.28 6.69 -4.05 -0.03 1.25 16 26 C -0.17 -1.37 10.24 37.16 0.38 -0.99 16 27 C 0.69 11.90 8.45 -87.17 -0.74 11.17 16 28 O -0.55 -11.05 17.48 5.20 0.09 -10.96 16 29 H 0.05 1.26 7.80 -51.93 -0.40 0.86 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.03 0.79 6.06 -51.93 -0.31 0.47 16 32 H 0.11 3.00 5.95 -51.93 -0.31 2.69 16 33 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.13 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.13 1.85 8.03 -51.93 -0.42 1.43 16 37 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 40 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 1.01 8.03 -51.93 -0.42 0.59 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 379.12 15.07 5.71 5.71 Total: -1.00 -34.81 379.12 -9.47 -44.28 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.43 Total: 2.43 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -3.20 Total: 4.62 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.02 Total: -41.00 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.55 Total: -31.96 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.81 -9.47 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188047866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.446 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds