Wall clock time and date at job start Tue Mar 31 2020 17:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46988 * 2 1 4 4 H 1.08997 * 109.47063 * 304.99715 * 3 2 1 5 5 C 1.50700 * 109.46998 * 185.00153 * 3 2 1 6 6 H 1.08004 * 119.99331 * 240.00094 * 5 3 2 7 7 C 1.37872 * 120.00037 * 59.99931 * 5 3 2 8 8 N 1.31514 * 120.00401 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00007 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47011 * 89.99920 * 9 7 5 11 11 H 1.48490 * 109.47337 * 210.00159 * 9 7 5 12 12 H 1.48500 * 109.47109 * 330.00384 * 9 7 5 13 13 O 1.45197 * 109.47044 * 65.00070 * 3 2 1 14 14 C 1.34229 * 117.00253 * 269.99691 * 13 3 2 15 15 O 1.20826 * 119.99833 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00311 * 180.02562 * 14 13 3 17 17 N 1.46496 * 109.47119 * 180.02562 * 16 14 13 18 18 C 1.39284 * 125.81946 * 269.71659 * 17 16 14 19 19 C 1.38657 * 133.33119 * 0.22514 * 18 17 16 20 20 C 1.38109 * 119.84959 * 180.02562 * 19 18 17 21 21 C 1.38439 * 120.28270 * 359.97438 * 20 19 18 22 22 C 1.38102 * 120.28169 * 359.95754 * 21 20 19 23 23 C 1.38654 * 119.85378 * 0.09446 * 22 21 20 24 24 N 1.39289 * 133.33659 * 179.97438 * 23 22 21 25 25 C 1.46498 * 125.81581 * 359.97438 * 24 23 22 26 26 C 1.52995 * 109.47213 * 270.02208 * 25 24 23 27 27 C 1.34634 * 108.36313 * 179.97438 * 24 23 22 28 28 O 1.21686 * 125.16487 * 180.02562 * 27 24 23 29 29 H 1.08998 * 109.46928 * 60.00147 * 1 2 3 30 30 H 1.08999 * 109.46939 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46992 * 299.99743 * 1 2 3 32 32 H 1.08995 * 109.46992 * 240.00257 * 2 1 3 33 33 H 1.08998 * 109.46928 * 119.99852 * 2 1 3 34 34 H 0.96990 * 120.00224 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46706 * 60.00008 * 16 14 13 36 36 H 1.09005 * 109.46676 * 300.00008 * 16 14 13 37 37 H 1.07998 * 120.08019 * 0.02562 * 19 18 17 38 38 H 1.08000 * 119.85718 * 179.97438 * 20 19 18 39 39 H 1.08004 * 119.85660 * 179.97438 * 21 20 19 40 40 H 1.08008 * 120.07165 * 179.97438 * 22 21 20 41 41 H 1.08997 * 109.47485 * 30.02839 * 25 24 23 42 42 H 1.09003 * 109.46973 * 150.02480 * 25 24 23 43 43 H 1.09001 * 109.47578 * 180.02562 * 26 25 24 44 44 H 1.09006 * 109.47197 * 300.00544 * 26 25 24 45 45 H 1.09003 * 109.46929 * 60.00245 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3366 -2.1729 9 14 6.0050 0.8813 -1.3819 10 1 6.5549 -0.3501 -0.7602 11 1 6.3830 0.9225 -2.8173 12 1 6.5570 2.0739 -0.6902 13 8 1.6559 2.0917 1.2407 14 6 0.4728 2.7254 1.2560 15 8 -0.2192 2.7370 0.2656 16 6 0.0075 3.4226 2.5084 17 7 -1.3031 4.0321 2.2699 18 6 -1.5280 5.3240 1.8005 19 6 -0.6863 6.3630 1.4334 20 6 -1.2208 7.5590 0.9961 21 6 -2.5933 7.7247 0.9223 22 6 -3.4395 6.6952 1.2845 23 6 -2.9122 5.4911 1.7257 24 7 -3.4856 4.2953 2.1516 25 6 -4.9210 4.0155 2.2373 26 6 -5.4355 4.4088 3.6234 27 6 -2.4957 3.4405 2.4712 28 8 -2.6547 2.3051 2.8793 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0611 -2.9498 35 1 0.7246 4.1969 2.7809 36 1 -0.0711 2.6985 3.3194 37 1 0.3849 6.2373 1.4892 38 1 -0.5653 8.3684 0.7105 39 1 -3.0039 8.6631 0.5798 40 1 -4.5098 6.8283 1.2260 41 1 -5.4493 4.5907 1.4769 42 1 -5.0942 2.9518 2.0738 43 1 -6.5035 4.2002 3.6873 44 1 -4.9071 3.8336 4.3838 45 1 -5.2623 5.4725 3.7869 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188047866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:49 Heat of formation + Delta-G solvation = -77.646929 kcal Electronic energy + Delta-G solvation = -29203.124768 eV Core-core repulsion = 25186.041400 eV Total energy + Delta-G solvation = -4017.083368 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.63800 -41.41724 -39.40365 -38.01149 -37.10288 -36.82459 -35.57362 -33.50397 -32.96958 -31.58151 -29.91853 -29.65738 -28.86699 -25.49422 -24.83926 -23.70711 -23.43050 -22.80268 -21.69391 -21.10512 -19.18046 -19.02392 -18.82282 -18.38556 -17.63657 -17.38061 -17.06502 -17.04878 -16.54361 -15.97625 -15.49726 -15.29687 -15.20405 -14.84472 -14.83227 -14.60451 -14.28818 -14.19028 -13.94662 -13.50674 -13.36619 -13.33708 -13.25039 -13.11588 -12.89493 -12.86116 -12.61512 -12.24984 -12.15858 -12.09989 -11.99986 -11.84524 -11.72281 -11.50558 -11.47674 -11.24072 -10.89250 -10.56367 -9.38586 -8.85951 -8.29125 -6.46931 0.26163 0.40260 0.84696 1.19831 1.41481 1.43955 1.53624 1.58969 1.98989 2.20130 2.41460 2.80681 3.00465 3.45161 3.53057 3.78573 3.86172 3.97043 4.03183 4.13044 4.23009 4.26759 4.29006 4.35313 4.36450 4.45025 4.45357 4.47786 4.75023 4.76346 4.85555 4.87776 4.98043 5.10853 5.11871 5.17851 5.24214 5.27030 5.47968 5.50570 5.58079 5.59680 5.66572 5.79281 5.90449 6.05433 6.24650 6.57035 6.85744 6.98159 7.24222 8.77822 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017065 B = 0.003268 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.344331 B = 8564.684271 C = 9585.058042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.129 4.129 3 C 0.229 3.771 4 H 0.006 0.994 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.984 3.016 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.262 1.262 13 O -0.357 6.357 14 C 0.430 3.570 15 O -0.535 6.535 16 C 0.145 3.855 17 N -0.529 5.529 18 C 0.063 3.937 19 C -0.116 4.116 20 C -0.106 4.106 21 C -0.101 4.101 22 C -0.101 4.101 23 C 0.074 3.926 24 N -0.535 5.535 25 C 0.117 3.883 26 C -0.159 4.159 27 C 0.669 3.331 28 O -0.596 6.596 29 H 0.031 0.969 30 H 0.058 0.942 31 H 0.027 0.973 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.271 0.729 35 H 0.168 0.832 36 H 0.142 0.858 37 H 0.132 0.868 38 H 0.161 0.839 39 H 0.170 0.830 40 H 0.159 0.841 41 H 0.120 0.880 42 H 0.076 0.924 43 H 0.101 0.899 44 H 0.037 0.963 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.633 17.405 9.577 24.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.167 4.167 3 C 0.175 3.825 4 H 0.024 0.976 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.807 3.193 10 H -0.194 1.194 11 H -0.204 1.204 12 H -0.186 1.186 13 O -0.273 6.273 14 C 0.273 3.727 15 O -0.425 6.425 16 C 0.021 3.979 17 N -0.250 5.250 18 C -0.036 4.036 19 C -0.137 4.137 20 C -0.125 4.125 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.026 4.026 24 N -0.256 5.256 25 C -0.002 4.002 26 C -0.217 4.217 27 C 0.372 3.628 28 O -0.475 6.475 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.185 0.815 36 H 0.159 0.841 37 H 0.150 0.850 38 H 0.178 0.822 39 H 0.188 0.812 40 H 0.176 0.824 41 H 0.138 0.862 42 H 0.095 0.905 43 H 0.119 0.881 44 H 0.056 0.944 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.958 16.377 9.407 24.093 hybrid contribution 0.893 -0.934 -0.530 1.397 sum -14.065 15.443 8.878 22.696 Atomic orbital electron populations 1.21664 0.96892 1.00261 0.99458 1.21887 0.93727 0.98571 1.02505 1.20383 0.94782 0.88919 0.78378 0.97642 1.21319 0.90089 1.40151 1.07039 0.91120 1.25853 1.04448 0.93774 0.94284 1.70021 1.37588 1.37860 1.09923 0.85164 0.77373 0.79211 0.77557 1.19357 1.20386 1.18624 1.86446 1.35209 1.62834 1.42837 1.24558 0.80129 0.76948 0.91100 1.90627 1.55731 1.58903 1.37234 1.21110 0.83062 1.00815 0.92892 1.44668 1.05630 1.12782 1.61924 1.18485 0.94525 0.86097 1.04532 1.20425 0.99476 0.91969 1.01831 1.21288 0.96453 0.96207 0.98584 1.21346 0.92582 0.99406 0.98715 1.20464 1.02033 0.88952 1.00770 1.18462 0.89908 0.89760 1.04503 1.45299 1.07510 1.11728 1.61090 1.21873 0.74495 1.03038 1.00815 1.22105 1.02740 1.02261 0.94584 1.16209 0.81052 0.84337 0.81184 1.90971 1.84040 1.17206 1.55304 0.94967 0.92277 0.95381 0.89278 0.93417 0.92021 0.81459 0.84078 0.84981 0.82157 0.81222 0.82351 0.86150 0.90515 0.88071 0.94367 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.14 8.57 71.98 0.62 -5.53 16 2 C -0.13 -6.85 5.49 30.60 0.17 -6.68 16 3 C 0.23 12.76 2.25 29.85 0.07 12.82 16 4 H 0.01 0.36 7.16 -2.39 -0.02 0.35 16 5 C -0.55 -31.21 8.90 25.60 0.23 -30.98 16 6 H 0.07 3.89 7.81 -2.91 -0.02 3.87 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.92 -53.08 11.29 21.45 0.24 -52.83 16 9 Si 0.98 42.82 29.54 68.60 2.03 44.84 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 13 O -0.36 -17.44 9.81 -51.40 -0.50 -17.95 16 14 C 0.43 18.82 6.48 71.24 0.46 19.28 16 15 O -0.53 -27.08 13.57 21.96 0.30 -26.78 16 16 C 0.14 4.59 6.57 85.63 0.56 5.15 16 17 N -0.53 -17.52 2.27 -652.49 -1.48 -19.00 16 18 C 0.06 1.77 6.83 38.39 0.26 2.03 16 19 C -0.12 -2.61 10.02 22.34 0.22 -2.39 16 20 C -0.11 -1.66 10.03 22.29 0.22 -1.43 16 21 C -0.10 -1.29 10.03 22.29 0.22 -1.07 16 22 C -0.10 -1.61 10.02 22.34 0.22 -1.39 16 23 C 0.07 1.81 6.83 38.39 0.26 2.08 16 24 N -0.53 -14.84 2.78 -648.42 -1.81 -16.64 16 25 C 0.12 2.28 6.69 86.38 0.58 2.86 16 26 C -0.16 -2.38 10.24 71.98 0.74 -1.64 16 27 C 0.67 24.17 8.45 179.14 1.51 25.68 16 28 O -0.60 -25.51 17.48 -4.30 -0.08 -25.58 16 29 H 0.03 1.65 7.80 -2.39 -0.02 1.64 16 30 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.03 1.37 6.06 -2.39 -0.01 1.35 16 32 H 0.09 5.10 5.95 -2.39 -0.01 5.09 16 33 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.27 14.65 8.31 -92.72 -0.77 13.88 16 35 H 0.17 3.83 8.14 -2.39 -0.02 3.81 16 36 H 0.14 4.15 8.03 -2.38 -0.02 4.13 16 37 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 38 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.17 0.89 8.06 -2.91 -0.02 0.86 16 40 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 41 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.08 1.73 8.03 -2.39 -0.02 1.71 16 43 H 0.10 0.96 8.14 -2.39 -0.02 0.95 16 44 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -80.70 379.12 6.49 -74.20 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 1.00 Total: 19.60 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: 6.80 Total: 20.15 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -3.05 Total: -88.48 kcal Atomic # 8 Polarization: -70.03 SS G_CDS: -0.28 Total: -70.31 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -80.70 6.49 -74.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188047866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.443 kcal (2) G-P(sol) polarization free energy of solvation -80.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds