Wall clock time and date at job start Tue Mar 31 2020 17:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47257 * 2 1 4 4 C 1.50700 * 109.47222 * 119.99945 * 2 1 3 5 5 O 1.21271 * 120.00364 * 239.99941 * 4 2 1 6 6 N 1.34785 * 119.99845 * 59.99926 * 4 2 1 7 7 C 1.39435 * 119.99904 * 184.40611 * 6 4 2 8 8 C 1.39134 * 119.92880 * 146.16153 * 7 6 4 9 9 C 1.37660 * 120.07697 * 180.02562 * 8 7 6 10 10 C 1.39752 * 119.92560 * 359.97438 * 9 8 7 11 11 C 1.47598 * 120.07051 * 179.97438 * 10 9 8 12 12 O 1.21583 * 120.00316 * 352.49348 * 11 10 9 13 13 N 1.34781 * 119.99549 * 172.49178 * 11 10 9 14 14 C 1.47576 * 134.48866 * 180.70806 * 13 11 10 15 15 C 1.53951 * 86.11532 * 155.35745 * 14 13 11 16 16 O 1.42903 * 113.73973 * 269.15161 * 15 14 13 17 17 C 1.50698 * 113.74124 * 137.95570 * 15 14 13 18 18 H 1.07997 * 120.00668 * 16.75316 * 17 15 14 19 19 C 1.37876 * 119.99605 * 196.76106 * 17 15 14 20 20 N 1.31518 * 119.99983 * 188.16644 * 19 17 15 21 21 Si 1.86806 * 120.00320 * 8.16872 * 19 17 15 22 22 H 1.48496 * 109.46943 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.46660 * 299.99822 * 21 19 17 24 24 H 1.48494 * 109.46932 * 60.00095 * 21 19 17 25 25 C 1.47809 * 134.46021 * 0.57103 * 13 11 10 26 26 C 1.39743 * 119.85336 * 0.24711 * 10 9 8 27 27 C 1.37671 * 119.92290 * 359.51608 * 26 10 9 28 28 H 1.09002 * 109.46803 * 59.99671 * 1 2 3 29 29 H 1.09000 * 109.47338 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46706 * 300.00291 * 1 2 3 31 31 H 1.08997 * 109.47106 * 239.99740 * 2 1 3 32 32 H 1.09002 * 109.47554 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47483 * 299.99912 * 3 2 1 34 34 H 1.09003 * 109.47501 * 60.00195 * 3 2 1 35 35 H 0.97003 * 119.99846 * 4.40636 * 6 4 2 36 36 H 1.08002 * 119.95728 * 0.02562 * 8 7 6 37 37 H 1.08002 * 120.03860 * 179.97438 * 9 8 7 38 38 H 1.08998 * 113.77284 * 41.05926 * 14 13 11 39 39 H 1.09004 * 113.76989 * 269.65425 * 14 13 11 40 40 H 0.96699 * 114.00047 * 174.30536 * 16 15 14 41 41 H 0.97006 * 119.99954 * 354.89963 * 20 19 17 42 42 H 1.09000 * 113.76852 * 90.37866 * 25 13 11 43 43 H 1.09009 * 113.83491 * 318.92390 * 25 13 11 44 44 H 1.08003 * 120.03910 * 179.72669 * 26 10 9 45 45 H 1.08000 * 119.96191 * 180.25572 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -0.1211 2.0287 6 7 1.7067 -2.0008 1.4437 7 6 2.0939 -2.6314 2.6256 8 6 1.2731 -3.5982 3.1977 9 6 1.6521 -4.2222 4.3647 10 6 2.8632 -3.8841 4.9746 11 6 3.2724 -4.5508 6.2262 12 8 2.4993 -5.2927 6.8008 13 7 4.5033 -4.3371 6.7322 14 6 5.2343 -4.8286 7.9161 15 6 6.5168 -4.5177 7.1233 16 8 6.9944 -5.6184 6.3470 17 6 7.5977 -3.8680 7.9484 18 1 7.5505 -3.9060 9.0266 19 6 8.6468 -3.2248 7.3265 20 7 9.6696 -2.7987 8.0350 21 14 8.6155 -2.9586 5.4778 22 1 9.8512 -2.2497 5.0588 23 1 8.5417 -4.2725 4.7898 24 1 7.4290 -2.1426 5.1153 25 6 5.6634 -3.5181 6.3220 26 6 3.6831 -2.9093 4.3999 27 6 3.3004 -2.2926 3.2300 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.2030 -2.4908 0.7751 36 1 0.3374 -3.8593 2.7256 37 1 1.0142 -4.9723 4.8085 38 1 5.0868 -5.8903 8.1142 39 1 5.1041 -4.2072 8.8022 40 1 7.7481 -5.4028 5.7809 41 1 9.6531 -2.8701 9.0023 42 1 5.6593 -2.5109 6.7387 43 1 5.8576 -3.5354 5.2495 44 1 4.6176 -2.6425 4.8710 45 1 3.9356 -1.5421 2.7831 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193138842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:34 Heat of formation + Delta-G solvation = -43.887052 kcal Electronic energy + Delta-G solvation = -28400.637980 eV Core-core repulsion = 24385.018550 eV Total energy + Delta-G solvation = -4015.619430 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.00201 -40.02766 -38.57676 -37.33726 -35.07689 -34.87881 -34.28569 -32.63376 -31.17202 -30.25566 -28.50134 -27.56054 -26.00431 -25.28854 -24.36217 -22.84351 -22.37194 -20.28235 -20.07262 -19.12037 -18.05064 -17.94678 -17.42936 -17.01836 -16.12246 -15.93068 -15.51231 -15.08819 -14.84170 -14.70077 -14.38644 -14.06938 -13.97817 -13.53015 -13.45355 -13.44738 -12.97453 -12.90327 -12.75894 -12.63697 -12.49681 -12.35345 -12.09604 -11.93922 -11.65931 -11.55613 -11.46794 -11.14010 -10.72797 -10.50789 -10.44210 -10.06219 -9.94790 -9.50701 -9.40473 -9.01641 -8.98519 -8.53109 -8.32017 -8.00074 -6.72609 -4.48417 0.82001 1.37613 2.20600 2.66959 3.04375 3.14131 3.14493 3.25202 3.40782 3.98102 4.13735 4.16268 4.37644 4.44966 4.69953 4.75355 4.85603 4.87967 4.93653 5.12646 5.18944 5.19584 5.31130 5.36072 5.38667 5.41485 5.46216 5.48818 5.64834 5.82449 5.87078 5.88948 6.02314 6.11756 6.13975 6.19508 6.29564 6.32412 6.39985 6.53258 6.69200 6.89430 7.02389 7.51411 7.76437 8.07486 8.23177 8.55530 8.58931 8.68444 9.27714 10.63674 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.003322 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.173919 B = 8425.817793 C =10066.013071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.135 4.135 4 C 0.513 3.487 5 O -0.511 6.511 6 N -0.672 5.672 7 C 0.159 3.841 8 C -0.157 4.157 9 C -0.044 4.044 10 C -0.136 4.136 11 C 0.573 3.427 12 O -0.559 6.559 13 N -0.626 5.626 14 C 0.131 3.869 15 C 0.198 3.802 16 O -0.567 6.567 17 C -0.612 4.612 18 H 0.071 0.929 19 C 0.035 3.965 20 N -0.889 5.889 21 Si 1.038 2.962 22 H -0.276 1.276 23 H -0.279 1.279 24 H -0.271 1.271 25 C 0.050 3.950 26 C -0.081 4.081 27 C -0.131 4.131 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.411 0.589 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.366 0.634 41 H 0.274 0.726 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.147 0.853 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.847 5.123 -19.037 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 C -0.193 4.193 4 C 0.300 3.700 5 O -0.385 6.385 6 N -0.317 5.317 7 C 0.064 3.936 8 C -0.178 4.178 9 C -0.064 4.064 10 C -0.139 4.139 11 C 0.364 3.636 12 O -0.440 6.440 13 N -0.358 5.358 14 C 0.009 3.991 15 C 0.157 3.843 16 O -0.376 6.376 17 C -0.650 4.650 18 H 0.089 0.911 19 C -0.173 4.173 20 N -0.522 5.522 21 Si 0.867 3.133 22 H -0.202 1.202 23 H -0.206 1.206 24 H -0.197 1.197 25 C -0.073 4.073 26 C -0.100 4.100 27 C -0.151 4.151 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.247 0.753 36 H 0.147 0.853 37 H 0.156 0.844 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.217 0.783 41 H 0.085 0.915 42 H 0.117 0.883 43 H 0.092 0.908 44 H 0.164 0.836 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.526 5.484 -19.218 25.933 hybrid contribution -0.756 -0.484 0.651 1.108 sum -17.281 5.000 -18.567 25.853 Atomic orbital electron populations 1.21818 0.92602 1.02602 1.03331 1.21323 0.97768 0.98321 0.95949 1.21643 1.02097 0.93124 1.02416 1.20990 0.79892 0.80997 0.88078 1.90739 1.35656 1.65808 1.46260 1.43472 1.56759 1.12223 1.19236 1.17923 0.93438 0.94518 0.87681 1.20770 0.99703 0.99990 0.97295 1.21015 0.94592 0.97556 0.93205 1.20021 0.96914 0.99964 0.97051 1.17823 0.79925 0.81443 0.84402 1.90713 1.51374 1.39462 1.62420 1.50025 1.11972 1.46218 1.27618 1.23240 0.86856 1.00071 0.88928 1.20460 0.91630 0.83829 0.88383 1.86399 1.52332 1.38219 1.60661 1.22225 1.09413 1.38484 0.94921 0.91052 1.25816 0.91497 0.93121 1.06873 1.70796 1.28213 1.44304 1.08899 0.84202 0.77440 0.77058 0.74638 1.20163 1.20602 1.19721 1.24897 0.83841 0.98250 1.00270 1.22061 0.99692 0.93604 0.94657 1.21270 0.95290 1.01547 0.97012 0.91043 0.92108 0.91818 0.88129 0.91659 0.91763 0.91709 0.75345 0.85256 0.84372 0.90622 0.88900 0.78271 0.91544 0.88299 0.90849 0.83562 0.83782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.09 37.16 0.34 -0.29 16 2 C -0.11 -0.67 3.25 -91.77 -0.30 -0.97 16 3 C -0.14 -0.92 8.48 37.15 0.32 -0.60 16 4 C 0.51 5.06 7.00 -10.98 -0.08 4.99 16 5 O -0.51 -7.24 13.32 5.57 0.07 -7.17 16 6 N -0.67 -5.85 5.18 -9.86 -0.05 -5.90 16 7 C 0.16 1.93 6.32 -83.74 -0.53 1.41 16 8 C -0.16 -1.80 9.94 -39.46 -0.39 -2.19 16 9 C -0.04 -0.64 9.58 -39.23 -0.38 -1.01 16 10 C -0.14 -2.36 5.88 -104.95 -0.62 -2.97 16 11 C 0.57 11.83 7.98 -12.44 -0.10 11.73 16 12 O -0.56 -12.77 17.09 5.29 0.09 -12.68 16 13 N -0.63 -13.08 3.61 -179.33 -0.65 -13.73 16 14 C 0.13 2.81 8.23 -2.97 -0.02 2.78 16 15 C 0.20 4.53 1.06 -90.85 -0.10 4.44 16 16 O -0.57 -13.19 13.45 -35.23 -0.47 -13.67 16 17 C -0.61 -15.81 9.06 -34.44 -0.31 -16.12 16 18 H 0.07 1.98 8.05 -52.49 -0.42 1.55 16 19 C 0.03 0.91 5.47 -17.82 -0.10 0.81 16 20 N -0.89 -25.19 13.70 55.43 0.76 -24.43 16 21 Si 1.04 22.18 24.82 -169.99 -4.22 17.96 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 23 H -0.28 -5.37 5.57 56.52 0.31 -5.06 16 24 H -0.27 -5.25 6.22 56.52 0.35 -4.90 16 25 C 0.05 1.02 3.40 -2.85 -0.01 1.01 16 26 C -0.08 -1.34 9.08 -39.23 -0.36 -1.69 16 27 C -0.13 -1.93 8.68 -39.46 -0.34 -2.28 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.19 7.67 -51.93 -0.40 -0.21 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.41 2.04 8.37 -40.82 -0.34 1.69 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.14 1.92 7.66 -52.49 -0.40 1.51 16 38 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 39 H 0.09 1.88 8.09 -51.93 -0.42 1.46 16 40 H 0.37 7.91 5.44 45.56 0.25 8.15 16 41 H 0.27 7.75 8.72 -40.82 -0.36 7.39 16 42 H 0.10 1.96 8.09 -51.93 -0.42 1.54 16 43 H 0.07 1.40 5.07 -51.92 -0.26 1.14 16 44 H 0.15 2.48 3.87 -52.48 -0.20 2.28 16 45 H 0.14 2.18 6.12 -52.49 -0.32 1.86 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -33.17 364.66 -7.56 -40.72 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -5.61 Total: 14.36 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -2.97 Total: -0.97 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.06 Total: -44.06 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.31 Total: -33.51 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.22 Total: 17.96 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.17 -7.56 -40.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193138842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.164 kcal (2) G-P(sol) polarization free energy of solvation -33.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds