Wall clock time and date at job start Tue Mar 31 2020 17:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47268 * 2 1 4 4 H 1.08997 * 109.47010 * 304.99668 * 3 2 1 5 5 C 1.50699 * 109.47394 * 184.99840 * 3 2 1 6 6 H 1.08000 * 119.99951 * 240.00296 * 5 3 2 7 7 C 1.37873 * 119.99942 * 59.99658 * 5 3 2 8 8 N 1.31512 * 120.00198 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00175 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47397 * 89.99702 * 9 7 5 11 11 H 1.48496 * 109.47251 * 210.00549 * 9 7 5 12 12 H 1.48501 * 109.46549 * 330.00012 * 9 7 5 13 13 N 1.46499 * 109.47111 * 64.99759 * 3 2 1 14 14 C 1.34781 * 119.99669 * 275.00272 * 13 3 2 15 15 O 1.21277 * 120.00217 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99570 * 180.02562 * 14 13 3 17 17 H 1.08999 * 110.86201 * 52.65374 * 16 14 13 18 18 C 1.54916 * 111.23890 * 288.85987 * 16 14 13 19 19 C 1.51683 * 102.46816 * 266.38535 * 18 16 14 20 20 C 1.47664 * 125.86614 * 164.49243 * 19 18 16 21 21 C 1.39651 * 120.11746 * 359.72056 * 20 19 18 22 22 C 1.37954 * 119.95669 * 180.25727 * 21 20 19 23 23 C 1.38286 * 120.21008 * 359.43562 * 22 21 20 24 24 C 1.38814 * 120.24895 * 0.56330 * 23 22 21 25 25 O 1.35904 * 119.98565 * 179.74483 * 24 23 22 26 26 C 1.42898 * 117.00192 * 359.97438 * 25 24 23 27 27 C 1.38490 * 120.03064 * 359.71936 * 24 23 22 28 28 N 1.29082 * 108.27218 * 344.22793 * 19 18 16 29 29 O 1.41389 * 112.86995 * 359.94555 * 28 19 18 30 30 H 1.08994 * 109.46951 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47173 * 300.00461 * 1 2 3 32 32 H 1.09005 * 109.46724 * 60.00507 * 1 2 3 33 33 H 1.09001 * 109.47689 * 240.00091 * 2 1 3 34 34 H 1.09001 * 109.46874 * 119.99982 * 2 1 3 35 35 H 0.97005 * 120.00493 * 179.97438 * 8 7 5 36 36 H 0.97002 * 120.00374 * 94.99920 * 13 3 2 37 37 H 1.08997 * 110.92990 * 148.10052 * 18 16 14 38 38 H 1.09000 * 110.72917 * 24.57553 * 18 16 14 39 39 H 1.08002 * 120.01900 * 359.97085 * 21 20 19 40 40 H 1.08001 * 119.89626 * 179.72158 * 22 21 20 41 41 H 1.08005 * 119.87882 * 180.28543 * 23 22 21 42 42 H 1.09007 * 109.46614 * 299.99777 * 26 25 24 43 43 H 1.08996 * 109.47286 * 59.99849 * 26 25 24 44 44 H 1.08998 * 109.47612 * 180.02562 * 26 25 24 45 45 H 1.08005 * 120.09925 * 180.02562 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4444 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4063 0.3374 -2.1732 9 14 6.0051 0.8800 -1.3810 10 1 6.5540 -0.3519 -0.7596 11 1 6.3837 0.9215 -2.8163 12 1 6.5576 2.0720 -0.6888 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3668 15 8 -0.3392 2.6327 0.4340 16 6 0.0366 3.3387 2.6543 17 1 0.7843 4.0723 2.9559 18 6 -0.2029 2.3018 3.7801 19 6 -1.6969 2.0565 3.6870 20 6 -2.4285 0.9298 4.2999 21 6 -1.7394 -0.0334 5.0399 22 6 -2.4255 -1.0876 5.6066 23 6 -3.7962 -1.1880 5.4542 24 6 -4.4899 -0.2354 4.7205 25 8 -5.8363 -0.3421 4.5698 26 6 -6.4723 -1.4597 5.1930 27 6 -3.8105 0.8239 4.1423 28 7 -2.2197 3.0049 2.9846 29 8 -1.2655 3.9473 2.5368 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8294 -0.0605 -2.9502 36 1 2.2719 2.1232 1.9978 37 1 0.0613 2.7156 4.7533 38 1 0.3527 1.3847 3.5845 39 1 -0.6694 0.0444 5.1645 40 1 -1.8909 -1.8344 6.1749 41 1 -4.3286 -2.0130 5.9041 42 1 -6.0584 -2.3843 4.7904 43 1 -6.3000 -1.4226 6.2686 44 1 -7.5436 -1.4252 4.9949 45 1 -4.3492 1.5659 3.5715 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194576028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:53 Heat of formation + Delta-G solvation = -27.694396 kcal Electronic energy + Delta-G solvation = -28469.506065 eV Core-core repulsion = 24454.588801 eV Total energy + Delta-G solvation = -4014.917264 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.75125 -40.16505 -38.42433 -37.58791 -35.06502 -33.56327 -32.58251 -31.50753 -31.03269 -30.23334 -29.98210 -27.60153 -27.03138 -24.66104 -23.53662 -22.98672 -22.43589 -20.58893 -20.03453 -19.42600 -18.13197 -17.63568 -16.68075 -16.44962 -16.17655 -16.04189 -15.91671 -15.45060 -15.07068 -14.88376 -14.39562 -14.12900 -13.89549 -13.83833 -13.38866 -13.25577 -12.93555 -12.69964 -12.46090 -12.36522 -12.26207 -11.95136 -11.74451 -11.49345 -11.41961 -11.28425 -11.23087 -11.02837 -10.85621 -10.76485 -10.39957 -10.26681 -10.22419 -9.67158 -9.12674 -9.07389 -8.69395 -8.54002 -8.44639 -7.90401 -6.15634 -4.25741 0.49351 1.15977 2.11419 2.82390 2.96850 3.21455 3.28891 3.30620 3.32368 3.55034 3.81254 3.95203 4.30653 4.34794 4.48711 4.48889 4.67521 4.77175 4.81320 4.92145 5.02275 5.10680 5.15279 5.15916 5.23422 5.24096 5.46097 5.51169 5.58504 5.76563 5.95970 6.09138 6.20863 6.35660 6.36345 6.41368 6.62384 6.98451 7.07469 7.15540 7.29648 7.33423 7.37939 7.57300 7.67581 7.85412 8.13532 8.56251 8.72572 9.03063 9.41531 10.89638 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017171 B = 0.002786 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.299370 B =10046.899765 C =10644.280889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.703 5.703 14 C 0.485 3.515 15 O -0.521 6.521 16 C 0.021 3.979 17 H 0.136 0.864 18 C -0.136 4.136 19 C 0.114 3.886 20 C 0.007 3.993 21 C -0.123 4.123 22 C -0.081 4.081 23 C -0.194 4.194 24 C 0.125 3.875 25 O -0.315 6.315 26 C 0.027 3.973 27 C -0.113 4.113 28 N -0.264 5.264 29 O -0.163 6.163 30 H 0.023 0.977 31 H 0.035 0.965 32 H 0.049 0.951 33 H 0.100 0.900 34 H 0.031 0.969 35 H 0.265 0.735 36 H 0.388 0.612 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.100 0.900 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.650 -4.188 19.817 23.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.353 5.353 14 C 0.268 3.732 15 O -0.397 6.397 16 C -0.041 4.041 17 H 0.154 0.846 18 C -0.175 4.175 19 C -0.076 4.076 20 C 0.005 3.995 21 C -0.143 4.143 22 C -0.099 4.099 23 C -0.213 4.213 24 C 0.079 3.921 25 O -0.229 6.229 26 C -0.068 4.068 27 C -0.133 4.133 28 N -0.003 5.003 29 O -0.182 6.182 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.220 0.780 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.119 0.881 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.262 -3.490 18.276 22.849 hybrid contribution 2.223 -0.602 0.593 2.378 sum -11.039 -4.093 18.869 22.241 Atomic orbital electron populations 1.21829 0.98339 0.98063 1.01141 1.21935 0.92496 0.99737 1.02322 1.18820 0.94288 0.89151 0.80777 0.93267 1.21201 0.90544 1.39199 1.06391 0.92037 1.24890 0.98639 0.94791 0.95347 1.69893 1.35179 1.37453 1.09314 0.86449 0.84804 0.78417 0.77443 1.20543 1.21058 1.19856 1.46467 1.14156 1.55958 1.18733 1.20413 0.83563 0.80294 0.88976 1.90735 1.51185 1.58232 1.39597 1.23817 0.89467 0.96721 0.94141 0.84649 1.22987 0.93069 1.01145 1.00322 1.24103 0.94343 0.94735 0.94413 1.17471 0.91561 0.92507 0.97925 1.21154 1.00383 0.94263 0.98548 1.20842 0.93330 0.97367 0.98364 1.21391 0.95744 1.00554 1.03640 1.18815 0.82918 0.94664 0.95663 1.86106 1.17664 1.47142 1.71944 1.23081 0.98322 0.87964 0.97448 1.20555 0.92772 0.98289 1.01727 1.78393 1.14886 0.99741 1.07237 1.91304 1.12195 1.31290 1.83454 0.95795 0.94601 0.93166 0.88201 0.95027 0.92497 0.77992 0.86891 0.87147 0.84889 0.84933 0.85115 0.92500 0.92594 0.88123 0.84079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.52 37.16 0.32 -2.78 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.68 2.24 -69.08 -0.15 6.52 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -13.74 8.73 -34.44 -0.30 -14.04 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.45 11.29 55.43 0.63 -23.83 16 9 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 N -0.70 -13.90 5.02 -54.93 -0.28 -14.18 16 14 C 0.49 9.63 5.73 -10.98 -0.06 9.57 16 15 O -0.52 -12.82 13.73 -13.28 -0.18 -13.00 16 16 C 0.02 0.32 4.22 -26.87 -0.11 0.21 16 17 H 0.14 1.58 8.14 -51.93 -0.42 1.16 16 18 C -0.14 -1.59 5.83 -26.39 -0.15 -1.75 16 19 C 0.11 1.62 7.15 -79.42 -0.57 1.05 16 20 C 0.01 0.08 5.87 -105.05 -0.62 -0.53 16 21 C -0.12 -1.21 9.61 -39.16 -0.38 -1.59 16 22 C -0.08 -0.68 10.02 -39.67 -0.40 -1.08 16 23 C -0.19 -1.71 9.03 -39.35 -0.36 -2.07 16 24 C 0.12 1.39 6.68 -39.28 -0.26 1.13 16 25 O -0.32 -3.34 10.49 -19.44 -0.20 -3.55 16 26 C 0.03 0.16 9.81 101.05 0.99 1.15 16 27 C -0.11 -1.45 9.62 -39.02 -0.38 -1.83 16 28 N -0.26 -4.56 12.11 35.30 0.43 -4.14 16 29 O -0.16 -2.97 11.82 -30.20 -0.36 -3.32 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.03 0.79 5.65 -51.93 -0.29 0.50 16 32 H 0.05 1.24 7.85 -51.93 -0.41 0.83 16 33 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.39 6.34 8.54 -40.82 -0.35 6.00 16 37 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.11 1.22 7.72 -51.93 -0.40 0.81 16 39 H 0.13 1.03 7.36 -52.49 -0.39 0.65 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.13 0.81 6.28 -52.48 -0.33 0.48 16 42 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 43 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.14 1.94 7.84 -52.48 -0.41 1.52 16 LS Contribution 374.01 15.07 5.64 5.64 Total: -1.00 -33.97 374.01 -8.17 -42.14 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.15 Total: 6.55 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -2.67 Total: -7.53 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.78 Total: -42.14 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.74 Total: -19.87 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.97 -8.17 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194576028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.445 kcal (2) G-P(sol) polarization free energy of solvation -33.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds