Wall clock time and date at job start Tue Mar 31 2020 17:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47268 * 2 1 4 4 H 1.08997 * 109.47010 * 304.99668 * 3 2 1 5 5 C 1.50699 * 109.47394 * 184.99840 * 3 2 1 6 6 H 1.08000 * 119.99951 * 240.00296 * 5 3 2 7 7 C 1.37873 * 119.99942 * 59.99658 * 5 3 2 8 8 N 1.31512 * 120.00198 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00175 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47397 * 89.99702 * 9 7 5 11 11 H 1.48496 * 109.47251 * 210.00549 * 9 7 5 12 12 H 1.48501 * 109.46549 * 330.00012 * 9 7 5 13 13 N 1.46499 * 109.47111 * 64.99759 * 3 2 1 14 14 C 1.34781 * 119.99669 * 275.00272 * 13 3 2 15 15 O 1.21277 * 120.00217 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99570 * 180.02562 * 14 13 3 17 17 H 1.08999 * 110.86201 * 52.65374 * 16 14 13 18 18 C 1.54916 * 111.23890 * 288.85987 * 16 14 13 19 19 C 1.51683 * 102.46816 * 266.38535 * 18 16 14 20 20 C 1.47664 * 125.86614 * 164.49243 * 19 18 16 21 21 C 1.39651 * 120.11746 * 359.72056 * 20 19 18 22 22 C 1.37954 * 119.95669 * 180.25727 * 21 20 19 23 23 C 1.38286 * 120.21008 * 359.43562 * 22 21 20 24 24 C 1.38814 * 120.24895 * 0.56330 * 23 22 21 25 25 O 1.35904 * 119.98565 * 179.74483 * 24 23 22 26 26 C 1.42898 * 117.00192 * 359.97438 * 25 24 23 27 27 C 1.38490 * 120.03064 * 359.71936 * 24 23 22 28 28 N 1.29082 * 108.27218 * 344.22793 * 19 18 16 29 29 O 1.41389 * 112.86995 * 359.94555 * 28 19 18 30 30 H 1.08994 * 109.46951 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47173 * 300.00461 * 1 2 3 32 32 H 1.09005 * 109.46724 * 60.00507 * 1 2 3 33 33 H 1.09001 * 109.47689 * 240.00091 * 2 1 3 34 34 H 1.09001 * 109.46874 * 119.99982 * 2 1 3 35 35 H 0.97005 * 120.00493 * 179.97438 * 8 7 5 36 36 H 0.97002 * 120.00374 * 94.99920 * 13 3 2 37 37 H 1.08997 * 110.92990 * 148.10052 * 18 16 14 38 38 H 1.09000 * 110.72917 * 24.57553 * 18 16 14 39 39 H 1.08002 * 120.01900 * 359.97085 * 21 20 19 40 40 H 1.08001 * 119.89626 * 179.72158 * 22 21 20 41 41 H 1.08005 * 119.87882 * 180.28543 * 23 22 21 42 42 H 1.09007 * 109.46614 * 299.99777 * 26 25 24 43 43 H 1.08996 * 109.47286 * 59.99849 * 26 25 24 44 44 H 1.08998 * 109.47612 * 180.02562 * 26 25 24 45 45 H 1.08005 * 120.09925 * 180.02562 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4444 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4063 0.3374 -2.1732 9 14 6.0051 0.8800 -1.3810 10 1 6.5540 -0.3519 -0.7596 11 1 6.3837 0.9215 -2.8163 12 1 6.5576 2.0720 -0.6888 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3668 15 8 -0.3392 2.6327 0.4340 16 6 0.0366 3.3387 2.6543 17 1 0.7843 4.0723 2.9559 18 6 -0.2029 2.3018 3.7801 19 6 -1.6969 2.0565 3.6870 20 6 -2.4285 0.9298 4.2999 21 6 -1.7394 -0.0334 5.0399 22 6 -2.4255 -1.0876 5.6066 23 6 -3.7962 -1.1880 5.4542 24 6 -4.4899 -0.2354 4.7205 25 8 -5.8363 -0.3421 4.5698 26 6 -6.4723 -1.4597 5.1930 27 6 -3.8105 0.8239 4.1423 28 7 -2.2197 3.0049 2.9846 29 8 -1.2655 3.9473 2.5368 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8294 -0.0605 -2.9502 36 1 2.2719 2.1232 1.9978 37 1 0.0613 2.7156 4.7533 38 1 0.3527 1.3847 3.5845 39 1 -0.6694 0.0444 5.1645 40 1 -1.8909 -1.8344 6.1749 41 1 -4.3286 -2.0130 5.9041 42 1 -6.0584 -2.3843 4.7904 43 1 -6.3000 -1.4226 6.2686 44 1 -7.5436 -1.4252 4.9949 45 1 -4.3492 1.5659 3.5715 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194576028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:52 Heat of formation + Delta-G solvation = -50.602758 kcal Electronic energy + Delta-G solvation = -28470.499446 eV Core-core repulsion = 24454.588801 eV Total energy + Delta-G solvation = -4015.910645 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.90158 -41.03343 -39.89796 -38.41008 -36.91514 -34.62196 -34.38527 -33.16961 -32.01698 -31.46159 -30.85209 -28.92964 -28.13794 -25.99294 -24.81894 -24.37175 -23.30078 -22.12879 -21.22815 -21.01530 -19.38698 -18.80350 -18.02874 -17.45211 -17.33734 -16.94725 -16.91505 -16.67638 -16.44734 -16.31999 -15.94493 -15.48367 -14.90260 -14.67645 -14.62129 -14.49237 -14.28648 -14.05181 -13.70029 -13.55813 -13.37581 -13.18026 -12.99616 -12.92721 -12.84232 -12.70164 -12.65912 -12.23412 -12.14806 -12.08836 -11.93626 -11.76903 -11.63240 -11.43819 -11.06417 -10.57254 -10.40384 -9.74805 -9.69921 -9.23704 -8.15541 -6.33483 -0.38481 0.40597 1.17198 1.45934 1.47375 1.57008 1.58835 1.99160 2.25518 2.30703 2.50768 2.76866 2.99580 3.14189 3.31414 3.38926 3.81375 3.85482 4.00615 4.12836 4.18376 4.27659 4.40925 4.41861 4.44127 4.46761 4.50225 4.51549 4.63012 4.68638 4.72402 4.75225 4.92103 5.01427 5.20876 5.22501 5.35318 5.39534 5.41921 5.52568 5.59996 5.67688 5.76505 5.90441 6.15252 6.24680 6.40095 6.74513 6.91225 7.33134 7.52489 8.89916 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017171 B = 0.002786 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.299370 B =10046.899765 C =10644.280889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.116 4.116 3 C 0.279 3.721 4 H -0.010 1.010 5 C -0.544 4.544 6 H 0.078 0.922 7 C 0.014 3.986 8 N -0.918 5.918 9 Si 0.971 3.029 10 H -0.269 1.269 11 H -0.291 1.291 12 H -0.263 1.263 13 N -0.692 5.692 14 C 0.480 3.520 15 O -0.578 6.578 16 C 0.023 3.977 17 H 0.176 0.824 18 C -0.125 4.125 19 C 0.127 3.873 20 C -0.019 4.019 21 C -0.117 4.117 22 C -0.075 4.075 23 C -0.183 4.183 24 C 0.111 3.889 25 O -0.342 6.342 26 C 0.017 3.983 27 C -0.142 4.142 28 N -0.317 5.317 29 O -0.197 6.197 30 H 0.045 0.955 31 H 0.039 0.961 32 H 0.015 0.985 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.264 0.736 36 H 0.409 0.591 37 H 0.163 0.837 38 H 0.125 0.875 39 H 0.161 0.839 40 H 0.171 0.829 41 H 0.162 0.838 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.114 0.886 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.754 -6.124 23.757 26.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.155 4.155 3 C 0.175 3.825 4 H 0.008 0.992 5 C -0.582 4.582 6 H 0.096 0.904 7 C -0.186 4.186 8 N -0.556 5.556 9 Si 0.796 3.204 10 H -0.194 1.194 11 H -0.218 1.218 12 H -0.187 1.187 13 N -0.344 5.344 14 C 0.266 3.734 15 O -0.458 6.458 16 C -0.039 4.039 17 H 0.193 0.807 18 C -0.164 4.164 19 C -0.063 4.063 20 C -0.021 4.021 21 C -0.137 4.137 22 C -0.093 4.093 23 C -0.203 4.203 24 C 0.066 3.934 25 O -0.257 6.257 26 C -0.077 4.077 27 C -0.163 4.163 28 N -0.059 5.059 29 O -0.213 6.213 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.245 0.755 37 H 0.181 0.819 38 H 0.143 0.857 39 H 0.178 0.822 40 H 0.189 0.811 41 H 0.179 0.821 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.133 0.867 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.346 -5.405 22.269 25.571 hybrid contribution 1.497 -0.100 -0.581 1.609 sum -9.849 -5.506 21.688 24.448 Atomic orbital electron populations 1.21652 0.97632 0.98864 0.99665 1.21760 0.92921 0.99128 1.01734 1.18381 0.93851 0.89116 0.81138 0.99166 1.21561 0.91046 1.38818 1.06806 0.90429 1.25801 1.03364 0.94435 0.95025 1.70064 1.37161 1.38452 1.09915 0.85352 0.79028 0.79013 0.76981 1.19409 1.21755 1.18734 1.46140 1.14859 1.55549 1.17806 1.21372 0.82547 0.79282 0.90245 1.90716 1.52732 1.60157 1.42176 1.23977 0.89482 0.98300 0.92110 0.80666 1.23136 0.91178 1.00906 1.01147 1.24705 0.95954 0.93637 0.91975 1.17633 0.91437 0.93253 0.99743 1.21520 1.01708 0.93398 0.97082 1.21336 0.93175 0.97329 0.97462 1.21795 0.96285 1.00187 1.01984 1.18947 0.83405 0.94857 0.96164 1.86076 1.17688 1.49121 1.72792 1.23397 0.98910 0.87044 0.98362 1.20542 0.93588 0.99078 1.03056 1.78436 1.15324 1.01670 1.10507 1.91270 1.13414 1.32487 1.84165 0.93619 0.94222 0.96535 0.91065 0.93064 0.92676 0.75516 0.81899 0.85651 0.82167 0.81113 0.82063 0.91407 0.90821 0.86740 0.86902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.52 71.98 0.61 -4.99 16 2 C -0.12 -5.63 5.45 30.60 0.17 -5.47 16 3 C 0.28 14.00 2.24 44.25 0.10 14.10 16 4 H -0.01 -0.59 7.58 -2.39 -0.02 -0.61 16 5 C -0.54 -27.74 8.73 25.60 0.22 -27.52 16 6 H 0.08 3.62 7.74 -2.91 -0.02 3.59 16 7 C 0.01 0.72 5.29 84.65 0.45 1.17 16 8 N -0.92 -52.26 11.29 21.45 0.24 -52.02 16 9 Si 0.97 41.04 29.54 68.60 2.03 43.07 16 10 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 13 N -0.69 -26.92 5.02 -446.09 -2.24 -29.16 16 14 C 0.48 19.20 5.73 87.66 0.50 19.70 16 15 O -0.58 -29.94 13.73 14.99 0.21 -29.73 16 16 C 0.02 0.67 4.22 30.50 0.13 0.80 16 17 H 0.18 3.56 8.14 -2.39 -0.02 3.54 16 18 C -0.12 -2.54 5.83 30.82 0.18 -2.36 16 19 C 0.13 3.51 7.15 45.77 0.33 3.84 16 20 C -0.02 -0.47 5.87 -20.14 -0.12 -0.59 16 21 C -0.12 -1.89 9.61 22.54 0.22 -1.67 16 22 C -0.08 -0.94 10.02 22.21 0.22 -0.72 16 23 C -0.18 -2.66 9.03 22.42 0.20 -2.46 16 24 C 0.11 2.42 6.68 22.47 0.15 2.57 16 25 O -0.34 -7.23 10.49 -92.47 -0.97 -8.20 16 26 C 0.02 0.17 9.81 113.37 1.11 1.28 16 27 C -0.14 -3.79 9.62 22.64 0.22 -3.57 16 28 N -0.32 -11.43 12.11 -42.22 -0.51 -11.95 16 29 O -0.20 -7.33 11.82 -20.30 -0.24 -7.57 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.04 1.78 5.65 -2.39 -0.01 1.77 16 32 H 0.02 0.83 7.85 -2.38 -0.02 0.81 16 33 H 0.07 3.90 5.95 -2.39 -0.01 3.88 16 34 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.26 14.31 8.31 -92.70 -0.77 13.54 16 36 H 0.41 12.34 8.54 -92.71 -0.79 11.55 16 37 H 0.16 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.13 2.23 7.72 -2.39 -0.02 2.21 16 39 H 0.16 1.64 7.36 -2.91 -0.02 1.62 16 40 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 41 H 0.16 1.28 6.28 -2.91 -0.02 1.26 16 42 H 0.07 0.54 7.66 -2.38 -0.02 0.52 16 43 H 0.07 0.48 7.66 -2.39 -0.02 0.46 16 44 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.11 3.51 7.84 -2.91 -0.02 3.49 16 Total: -1.00 -81.62 374.01 3.44 -78.18 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.23 Total: 23.24 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 4.69 Total: -5.87 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -2.51 Total: -93.12 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -1.00 Total: -45.50 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -81.62 3.44 -78.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194576028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.581 kcal (2) G-P(sol) polarization free energy of solvation -81.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds