Wall clock time and date at job start Tue Mar 31 2020 17:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47080 * 2 1 4 4 H 1.08997 * 109.46624 * 55.00196 * 3 2 1 5 5 C 1.50700 * 109.46986 * 175.00138 * 3 2 1 6 6 H 1.07999 * 119.99988 * 120.00054 * 5 3 2 7 7 C 1.37885 * 120.00047 * 300.00234 * 5 3 2 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 3 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47021 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47081 * 119.99727 * 9 7 5 12 12 H 1.48501 * 109.47213 * 240.00099 * 9 7 5 13 13 N 1.46497 * 109.47133 * 295.00068 * 3 2 1 14 14 C 1.34781 * 119.99836 * 85.00165 * 13 3 2 15 15 O 1.21281 * 119.99724 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99965 * 180.02562 * 14 13 3 17 17 H 1.09000 * 110.85928 * 301.19618 * 16 14 13 18 18 C 1.54734 * 110.97403 * 64.99613 * 16 14 13 19 19 C 1.51692 * 102.54790 * 142.33846 * 18 16 14 20 20 C 1.47651 * 125.86595 * 164.59057 * 19 18 16 21 21 C 1.39647 * 120.12335 * 359.97438 * 20 19 18 22 22 C 1.37959 * 119.96252 * 179.97438 * 21 20 19 23 23 C 1.38286 * 120.21286 * 0.02562 * 22 21 20 24 24 C 1.38820 * 120.24057 * 359.95681 * 23 22 21 25 25 O 1.35908 * 119.98125 * 180.02562 * 24 23 22 26 26 C 1.42902 * 116.99661 * 359.97438 * 25 24 23 27 27 C 1.38483 * 120.03890 * 359.78618 * 24 23 22 28 28 N 1.29078 * 108.26781 * 344.60853 * 19 18 16 29 29 O 1.41385 * 112.87679 * 359.68225 * 28 19 18 30 30 H 1.08995 * 109.46667 * 299.99427 * 1 2 3 31 31 H 1.08996 * 109.47218 * 59.99859 * 1 2 3 32 32 H 1.08999 * 109.46636 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47249 * 240.00079 * 2 1 3 34 34 H 1.08996 * 109.47228 * 120.00698 * 2 1 3 35 35 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 36 36 H 0.97000 * 120.00203 * 264.99839 * 13 3 2 37 37 H 1.09002 * 110.79107 * 260.59827 * 18 16 14 38 38 H 1.08999 * 110.79242 * 23.88409 * 18 16 14 39 39 H 1.08004 * 120.01905 * 0.02562 * 21 20 19 40 40 H 1.07999 * 119.89506 * 180.02562 * 22 21 20 41 41 H 1.07989 * 119.88048 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.47705 * 60.00095 * 26 25 24 43 43 H 1.09004 * 109.46972 * 180.02562 * 26 25 24 44 44 H 1.09002 * 109.47265 * 299.99590 * 26 25 24 45 45 H 1.08000 * 120.10763 * 180.23065 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2280 8 7 3.4061 0.3417 2.1757 9 14 6.0050 0.8811 1.3817 10 1 6.5988 1.5462 0.1941 11 1 6.3991 1.6166 2.6102 12 1 6.4971 -0.5176 1.4628 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3395 2.6319 -0.4342 16 6 0.0362 3.3377 -2.6547 17 1 0.7263 4.1447 -2.9007 18 6 -0.0527 2.3132 -3.8109 19 6 -1.2498 2.8092 -4.5995 20 6 -1.6061 2.4080 -5.9751 21 6 -0.8093 1.4933 -6.6669 22 6 -1.1456 1.1204 -7.9518 23 6 -2.2698 1.6499 -8.5585 24 6 -3.0681 2.5596 -7.8786 25 8 -4.1721 3.0764 -8.4797 26 6 -4.4500 2.6395 -9.8116 27 6 -2.7431 2.9370 -6.5864 28 7 -1.9033 3.6426 -3.8615 29 8 -1.3207 3.8210 -2.5857 30 1 -0.3632 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8292 -0.0567 2.9522 36 1 2.2719 2.1232 -1.9978 37 1 0.8502 2.3390 -4.4210 38 1 -0.2288 1.3090 -3.4253 39 1 0.0692 1.0774 -6.1960 40 1 -0.5288 0.4126 -8.4857 41 1 -2.5277 1.3546 -9.5646 42 1 -4.5922 1.5589 -9.8174 43 1 -5.3555 3.1274 -10.1725 44 1 -3.6142 2.8995 -10.4611 45 1 -3.3655 3.6418 -6.0551 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194576038.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:57 Heat of formation + Delta-G solvation = -27.449242 kcal Electronic energy + Delta-G solvation = -27826.796528 eV Core-core repulsion = 23811.889895 eV Total energy + Delta-G solvation = -4014.906633 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.77955 -40.21008 -38.60737 -37.69971 -35.12455 -33.63058 -32.61659 -31.56494 -31.12160 -30.30349 -30.06131 -27.70364 -27.03695 -24.69172 -23.62935 -23.01820 -22.50561 -20.58269 -20.13441 -19.44503 -18.19890 -17.61361 -16.75232 -16.62970 -16.30082 -16.14450 -15.97185 -15.37143 -15.35193 -14.79746 -14.48261 -14.13015 -13.99321 -13.86690 -13.45953 -13.34976 -13.08403 -12.75132 -12.55372 -12.49112 -12.28577 -12.04169 -11.82214 -11.58700 -11.42200 -11.33959 -11.31165 -11.01229 -10.88763 -10.84942 -10.37600 -10.26105 -10.13396 -9.69036 -9.15479 -9.09524 -8.87841 -8.58518 -8.55367 -7.94256 -6.17321 -4.27178 0.36268 1.04193 1.99127 2.70871 2.85457 3.15203 3.20556 3.28687 3.30681 3.42893 3.75153 3.98653 4.27779 4.35029 4.38338 4.48203 4.58923 4.67416 4.71645 4.80987 4.87366 4.99755 5.05820 5.12453 5.14492 5.23675 5.41348 5.49163 5.53398 5.68425 5.84799 5.98255 6.09994 6.24864 6.34085 6.39677 6.60165 6.96106 6.96636 7.12685 7.22246 7.29145 7.34580 7.55730 7.65769 7.83341 8.11387 8.52710 8.70498 8.98808 9.39989 10.88079 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022202 B = 0.002293 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.848370 B =12207.036616 C =12708.580334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.701 5.701 14 C 0.507 3.493 15 O -0.521 6.521 16 C 0.023 3.977 17 H 0.110 0.890 18 C -0.137 4.137 19 C 0.118 3.882 20 C 0.004 3.996 21 C -0.123 4.123 22 C -0.081 4.081 23 C -0.193 4.193 24 C 0.124 3.876 25 O -0.315 6.315 26 C 0.027 3.973 27 C -0.114 4.114 28 N -0.277 5.277 29 O -0.158 6.158 30 H 0.051 0.949 31 H 0.035 0.965 32 H 0.024 0.976 33 H 0.032 0.968 34 H 0.100 0.900 35 H 0.265 0.735 36 H 0.389 0.611 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.056 0.944 43 H 0.101 0.899 44 H 0.056 0.944 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.536 0.869 -25.137 26.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.351 5.351 14 C 0.288 3.712 15 O -0.397 6.397 16 C -0.040 4.040 17 H 0.127 0.873 18 C -0.176 4.176 19 C -0.072 4.072 20 C 0.003 3.997 21 C -0.143 4.143 22 C -0.099 4.099 23 C -0.212 4.212 24 C 0.079 3.921 25 O -0.229 6.229 26 C -0.068 4.068 27 C -0.134 4.134 28 N -0.015 5.015 29 O -0.178 6.178 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.221 0.779 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.075 0.925 43 H 0.119 0.881 44 H 0.075 0.925 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.180 1.666 -23.842 25.978 hybrid contribution 2.151 -0.683 -0.470 2.305 sum -8.030 0.983 -24.312 25.623 Atomic orbital electron populations 1.21850 0.98324 0.98166 1.01222 1.21944 0.92550 0.99686 1.02409 1.18857 0.94383 0.89186 0.80628 0.93126 1.21235 0.90492 1.39174 1.06430 0.91947 1.24897 0.98683 0.94789 0.95339 1.69906 1.35088 1.37582 1.09193 0.86388 0.84736 0.77778 0.78157 1.19741 1.20864 1.20867 1.46442 1.13915 1.55851 1.18878 1.19709 0.83528 0.80079 0.87866 1.90738 1.51144 1.58340 1.39450 1.23713 0.87783 0.96896 0.95589 0.87289 1.22954 0.98108 1.02043 0.94500 1.24127 0.95478 0.93529 0.94088 1.17490 0.95286 0.97887 0.89082 1.21194 1.00286 0.97872 0.94954 1.20866 0.95943 0.98640 0.94446 1.21412 0.97759 1.00750 1.01324 1.18824 0.87198 0.93701 0.92375 1.86109 1.41501 1.65416 1.29850 1.23091 1.02091 1.00482 0.81173 1.20559 0.97597 1.02394 0.92872 1.78409 1.18059 1.12987 0.92050 1.91397 1.23145 1.81077 1.22213 0.93028 0.94564 0.95689 0.94934 0.88156 0.92532 0.77887 0.86953 0.87028 0.84710 0.84864 0.85073 0.92504 0.88075 0.92533 0.84053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.74 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.57 2.24 -69.08 -0.15 6.42 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -13.59 8.73 -34.44 -0.30 -13.89 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -24.16 11.31 55.43 0.63 -23.54 16 9 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 10 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.70 -13.66 5.01 -54.93 -0.28 -13.94 16 14 C 0.51 9.96 5.71 -10.98 -0.06 9.89 16 15 O -0.52 -12.61 13.72 -13.29 -0.18 -12.79 16 16 C 0.02 0.35 4.23 -26.97 -0.11 0.24 16 17 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 18 C -0.14 -1.63 5.80 -26.48 -0.15 -1.78 16 19 C 0.12 1.51 7.16 -79.42 -0.57 0.94 16 20 C 0.00 0.04 5.87 -105.05 -0.62 -0.58 16 21 C -0.12 -1.02 9.61 -39.16 -0.38 -1.40 16 22 C -0.08 -0.57 10.02 -39.67 -0.40 -0.96 16 23 C -0.19 -1.42 9.03 -39.35 -0.36 -1.78 16 24 C 0.12 1.18 6.68 -39.28 -0.26 0.92 16 25 O -0.32 -2.88 10.49 -19.45 -0.20 -3.09 16 26 C 0.03 0.13 9.81 101.05 0.99 1.12 16 27 C -0.11 -1.26 9.62 -39.02 -0.38 -1.63 16 28 N -0.28 -4.43 12.11 35.30 0.43 -4.01 16 29 O -0.16 -2.93 11.82 -30.21 -0.36 -3.29 16 30 H 0.05 1.23 7.85 -51.93 -0.41 0.83 16 31 H 0.04 0.77 5.64 -51.93 -0.29 0.48 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 2.63 5.96 -51.93 -0.31 2.32 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.39 6.28 8.54 -40.82 -0.35 5.93 16 37 H 0.11 0.92 7.95 -51.93 -0.41 0.51 16 38 H 0.11 1.39 7.90 -51.93 -0.41 0.98 16 39 H 0.14 0.87 7.36 -52.48 -0.39 0.49 16 40 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 41 H 0.13 0.64 6.28 -52.49 -0.33 0.31 16 42 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 43 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 45 H 0.14 1.66 7.84 -52.49 -0.41 1.25 16 LS Contribution 373.98 15.07 5.64 5.64 Total: -1.00 -33.00 373.98 -8.17 -41.17 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.15 Total: 5.47 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -2.67 Total: -6.71 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.78 Total: -41.48 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.74 Total: -19.16 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.00 -8.17 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194576038.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.723 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds