Wall clock time and date at job start Tue Mar 31 2020 17:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47080 * 2 1 4 4 H 1.08997 * 109.46624 * 55.00196 * 3 2 1 5 5 C 1.50700 * 109.46986 * 175.00138 * 3 2 1 6 6 H 1.07999 * 119.99988 * 120.00054 * 5 3 2 7 7 C 1.37885 * 120.00047 * 300.00234 * 5 3 2 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 3 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47021 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47081 * 119.99727 * 9 7 5 12 12 H 1.48501 * 109.47213 * 240.00099 * 9 7 5 13 13 N 1.46497 * 109.47133 * 295.00068 * 3 2 1 14 14 C 1.34781 * 119.99836 * 85.00165 * 13 3 2 15 15 O 1.21281 * 119.99724 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99965 * 180.02562 * 14 13 3 17 17 H 1.09000 * 110.85928 * 301.19618 * 16 14 13 18 18 C 1.54734 * 110.97403 * 64.99613 * 16 14 13 19 19 C 1.51692 * 102.54790 * 142.33846 * 18 16 14 20 20 C 1.47651 * 125.86595 * 164.59057 * 19 18 16 21 21 C 1.39647 * 120.12335 * 359.97438 * 20 19 18 22 22 C 1.37959 * 119.96252 * 179.97438 * 21 20 19 23 23 C 1.38286 * 120.21286 * 0.02562 * 22 21 20 24 24 C 1.38820 * 120.24057 * 359.95681 * 23 22 21 25 25 O 1.35908 * 119.98125 * 180.02562 * 24 23 22 26 26 C 1.42902 * 116.99661 * 359.97438 * 25 24 23 27 27 C 1.38483 * 120.03890 * 359.78618 * 24 23 22 28 28 N 1.29078 * 108.26781 * 344.60853 * 19 18 16 29 29 O 1.41385 * 112.87679 * 359.68225 * 28 19 18 30 30 H 1.08995 * 109.46667 * 299.99427 * 1 2 3 31 31 H 1.08996 * 109.47218 * 59.99859 * 1 2 3 32 32 H 1.08999 * 109.46636 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47249 * 240.00079 * 2 1 3 34 34 H 1.08996 * 109.47228 * 120.00698 * 2 1 3 35 35 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 36 36 H 0.97000 * 120.00203 * 264.99839 * 13 3 2 37 37 H 1.09002 * 110.79107 * 260.59827 * 18 16 14 38 38 H 1.08999 * 110.79242 * 23.88409 * 18 16 14 39 39 H 1.08004 * 120.01905 * 0.02562 * 21 20 19 40 40 H 1.07999 * 119.89506 * 180.02562 * 22 21 20 41 41 H 1.07989 * 119.88048 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.47705 * 60.00095 * 26 25 24 43 43 H 1.09004 * 109.46972 * 180.02562 * 26 25 24 44 44 H 1.09002 * 109.47265 * 299.99590 * 26 25 24 45 45 H 1.08000 * 120.10763 * 180.23065 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2280 8 7 3.4061 0.3417 2.1757 9 14 6.0050 0.8811 1.3817 10 1 6.5988 1.5462 0.1941 11 1 6.3991 1.6166 2.6102 12 1 6.4971 -0.5176 1.4628 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3395 2.6319 -0.4342 16 6 0.0362 3.3377 -2.6547 17 1 0.7263 4.1447 -2.9007 18 6 -0.0527 2.3132 -3.8109 19 6 -1.2498 2.8092 -4.5995 20 6 -1.6061 2.4080 -5.9751 21 6 -0.8093 1.4933 -6.6669 22 6 -1.1456 1.1204 -7.9518 23 6 -2.2698 1.6499 -8.5585 24 6 -3.0681 2.5596 -7.8786 25 8 -4.1721 3.0764 -8.4797 26 6 -4.4500 2.6395 -9.8116 27 6 -2.7431 2.9370 -6.5864 28 7 -1.9033 3.6426 -3.8615 29 8 -1.3207 3.8210 -2.5857 30 1 -0.3632 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8292 -0.0567 2.9522 36 1 2.2719 2.1232 -1.9978 37 1 0.8502 2.3390 -4.4210 38 1 -0.2288 1.3090 -3.4253 39 1 0.0692 1.0774 -6.1960 40 1 -0.5288 0.4126 -8.4857 41 1 -2.5277 1.3546 -9.5646 42 1 -4.5922 1.5589 -9.8174 43 1 -5.3555 3.1274 -10.1725 44 1 -3.6142 2.8995 -10.4611 45 1 -3.3655 3.6418 -6.0551 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194576038.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:56 Heat of formation + Delta-G solvation = -49.196575 kcal Electronic energy + Delta-G solvation = -27827.739563 eV Core-core repulsion = 23811.889895 eV Total energy + Delta-G solvation = -4015.849668 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.84679 -41.03013 -40.06051 -38.40774 -36.95315 -34.64765 -34.39882 -33.18892 -32.02828 -31.49824 -30.85218 -28.91126 -28.12570 -25.99388 -24.81243 -24.39519 -23.24685 -22.12842 -21.21298 -21.04026 -19.29334 -18.89375 -18.02238 -17.48300 -17.31239 -17.08592 -16.89623 -16.65710 -16.49062 -16.25273 -16.09767 -15.36527 -14.86752 -14.67015 -14.60361 -14.46790 -14.37714 -14.19623 -13.76390 -13.54809 -13.44132 -13.18508 -12.98396 -12.95737 -12.83447 -12.72489 -12.69496 -12.17923 -12.07982 -12.05319 -11.94815 -11.79749 -11.59976 -11.22780 -11.04746 -10.63661 -10.50200 -9.78873 -9.71841 -9.23339 -8.15157 -6.32521 -0.41968 0.41561 1.13466 1.45889 1.46845 1.52451 1.59456 1.67379 2.23031 2.38468 2.57724 2.76524 2.95587 3.14921 3.31067 3.34300 3.76003 3.83025 3.96324 4.02643 4.19079 4.28403 4.36114 4.43577 4.45834 4.47655 4.49839 4.55830 4.61217 4.68539 4.74564 4.77300 4.93069 5.04113 5.23211 5.24217 5.36392 5.41543 5.42975 5.51845 5.60432 5.67794 5.77973 5.89948 6.15664 6.17805 6.41022 6.74875 6.87908 7.32360 7.48890 8.90529 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022202 B = 0.002293 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.848370 B =12207.036616 C =12708.580334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.119 4.119 3 C 0.278 3.722 4 H -0.005 1.005 5 C -0.544 4.544 6 H 0.078 0.922 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.257 1.257 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.689 5.689 14 C 0.506 3.494 15 O -0.574 6.574 16 C 0.026 3.974 17 H 0.137 0.863 18 C -0.129 4.129 19 C 0.142 3.858 20 C -0.020 4.020 21 C -0.115 4.115 22 C -0.076 4.076 23 C -0.181 4.181 24 C 0.111 3.889 25 O -0.342 6.342 26 C 0.017 3.983 27 C -0.137 4.137 28 N -0.318 5.318 29 O -0.206 6.206 30 H 0.019 0.981 31 H 0.040 0.960 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.264 0.736 36 H 0.410 0.590 37 H 0.163 0.837 38 H 0.111 0.889 39 H 0.160 0.840 40 H 0.170 0.830 41 H 0.161 0.839 42 H 0.069 0.931 43 H 0.114 0.886 44 H 0.071 0.929 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.452 -0.610 -29.423 30.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.158 4.158 3 C 0.174 3.826 4 H 0.013 0.987 5 C -0.582 4.582 6 H 0.096 0.904 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.181 1.181 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.340 5.340 14 C 0.290 3.710 15 O -0.454 6.454 16 C -0.036 4.036 17 H 0.155 0.845 18 C -0.168 4.168 19 C -0.047 4.047 20 C -0.021 4.021 21 C -0.135 4.135 22 C -0.093 4.093 23 C -0.200 4.200 24 C 0.066 3.934 25 O -0.256 6.256 26 C -0.077 4.077 27 C -0.158 4.158 28 N -0.060 5.060 29 O -0.223 6.223 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.246 0.754 37 H 0.180 0.820 38 H 0.129 0.871 39 H 0.178 0.822 40 H 0.188 0.812 41 H 0.178 0.822 42 H 0.088 0.912 43 H 0.132 0.868 44 H 0.090 0.910 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.074 0.202 -28.166 29.301 hybrid contribution 1.402 -0.259 0.691 1.584 sum -6.672 -0.057 -27.474 28.273 Atomic orbital electron populations 1.21693 0.97460 0.99139 0.99929 1.21778 0.93176 0.98989 1.01817 1.18441 0.93927 0.89234 0.80954 0.98736 1.21587 0.91024 1.38766 1.06805 0.90416 1.25791 1.03298 0.94488 0.95059 1.70069 1.37028 1.38545 1.09790 0.85310 0.79130 0.77771 0.78178 1.18059 1.21536 1.20492 1.46096 1.14513 1.55366 1.18019 1.20430 0.82634 0.79101 0.88850 1.90718 1.52653 1.60199 1.41834 1.23718 0.87553 0.98339 0.93992 0.84528 1.23043 0.99767 1.00519 0.93434 1.24602 0.94477 0.91229 0.94364 1.17562 0.96390 0.99860 0.88289 1.21531 1.00258 0.96359 0.95341 1.21326 0.95743 0.98361 0.93895 1.21807 0.96965 0.98960 1.02312 1.18942 0.87903 0.94441 0.92091 1.86080 1.41549 1.66078 1.31879 1.23394 1.03357 1.01512 0.79459 1.20537 0.98161 1.03034 0.94052 1.78480 1.19312 1.16510 0.91694 1.91364 1.24509 1.81910 1.24531 0.96135 0.94076 0.93383 0.93035 0.90991 0.92665 0.75449 0.81951 0.87063 0.82213 0.81250 0.82164 0.91216 0.86790 0.91036 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.51 71.98 0.61 -5.01 16 2 C -0.12 -5.63 5.45 30.60 0.17 -5.47 16 3 C 0.28 13.73 2.24 44.25 0.10 13.83 16 4 H -0.01 -0.32 7.58 -2.39 -0.02 -0.34 16 5 C -0.54 -27.40 8.73 25.60 0.22 -27.18 16 6 H 0.08 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.01 0.72 5.29 84.66 0.45 1.16 16 8 N -0.92 -51.54 11.31 21.45 0.24 -51.29 16 9 Si 0.97 40.76 29.54 68.60 2.03 42.79 16 10 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 11 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 13 N -0.69 -26.47 5.01 -446.10 -2.24 -28.71 16 14 C 0.51 20.12 5.71 87.66 0.50 20.62 16 15 O -0.57 -29.26 13.72 14.99 0.21 -29.05 16 16 C 0.03 0.79 4.23 30.44 0.13 0.91 16 17 H 0.14 3.32 8.14 -2.39 -0.02 3.30 16 18 C -0.13 -2.74 5.80 30.76 0.18 -2.56 16 19 C 0.14 3.52 7.16 45.77 0.33 3.85 16 20 C -0.02 -0.39 5.87 -20.14 -0.12 -0.51 16 21 C -0.11 -1.45 9.61 22.54 0.22 -1.23 16 22 C -0.08 -0.69 10.02 22.21 0.22 -0.47 16 23 C -0.18 -2.00 9.03 22.42 0.20 -1.80 16 24 C 0.11 1.97 6.68 22.47 0.15 2.12 16 25 O -0.34 -5.97 10.49 -92.52 -0.97 -6.95 16 26 C 0.02 0.12 9.81 113.37 1.11 1.23 16 27 C -0.14 -3.04 9.62 22.64 0.22 -2.82 16 28 N -0.32 -10.50 12.11 -42.23 -0.51 -11.01 16 29 O -0.21 -7.94 11.82 -20.28 -0.24 -8.18 16 30 H 0.02 1.01 7.85 -2.39 -0.02 0.99 16 31 H 0.04 1.78 5.64 -2.39 -0.01 1.77 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.07 3.87 5.96 -2.39 -0.01 3.86 16 35 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 36 H 0.41 12.24 8.54 -92.71 -0.79 11.45 16 37 H 0.16 1.81 7.95 -2.39 -0.02 1.79 16 38 H 0.11 2.48 7.90 -2.39 -0.02 2.46 16 39 H 0.16 1.17 7.36 -2.91 -0.02 1.15 16 40 H 0.17 0.39 8.06 -2.91 -0.02 0.36 16 41 H 0.16 0.78 6.28 -2.92 -0.02 0.76 16 42 H 0.07 0.32 7.66 -2.39 -0.02 0.30 16 43 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 44 H 0.07 0.30 7.66 -2.39 -0.02 0.28 16 45 H 0.12 3.04 7.84 -2.91 -0.02 3.02 16 Total: -1.00 -78.31 373.98 3.44 -74.87 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.23 Total: 20.84 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 4.69 Total: -3.30 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -2.51 Total: -91.01 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -1.00 Total: -44.18 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -78.31 3.44 -74.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194576038.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.673 kcal (2) G-P(sol) polarization free energy of solvation -78.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds