Wall clock time and date at job start Tue Mar 31 2020 17:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47088 * 2 1 4 4 H 1.09001 * 109.47113 * 305.00147 * 3 2 1 5 5 C 1.50695 * 109.46867 * 185.00492 * 3 2 1 6 6 H 1.08004 * 119.99693 * 239.99528 * 5 3 2 7 7 C 1.37877 * 120.00656 * 60.00085 * 5 3 2 8 8 N 1.31517 * 119.99503 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00156 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46882 * 89.99891 * 9 7 5 11 11 H 1.48502 * 109.46969 * 209.99720 * 9 7 5 12 12 H 1.48497 * 109.47275 * 329.99704 * 9 7 5 13 13 N 1.46496 * 109.46843 * 64.99918 * 3 2 1 14 14 C 1.34770 * 120.00395 * 274.99766 * 13 3 2 15 15 O 1.21284 * 119.99757 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00172 * 180.02562 * 14 13 3 17 17 H 1.09000 * 110.86441 * 301.19915 * 16 14 13 18 18 C 1.54742 * 110.97542 * 65.00314 * 16 14 13 19 19 C 1.51688 * 102.54807 * 93.89062 * 18 16 14 20 20 C 1.47653 * 125.86119 * 195.39209 * 19 18 16 21 21 C 1.39652 * 120.12420 * 359.97438 * 20 19 18 22 22 C 1.37962 * 119.96000 * 179.76702 * 21 20 19 23 23 C 1.38287 * 120.20988 * 0.53039 * 22 21 20 24 24 C 1.38822 * 120.24718 * 359.44678 * 23 22 21 25 25 O 1.35909 * 119.98216 * 180.27630 * 24 23 22 26 26 C 1.42894 * 116.99916 * 359.97438 * 25 24 23 27 27 C 1.38490 * 120.03140 * 0.29570 * 24 23 22 28 28 N 1.29076 * 108.27434 * 15.65806 * 19 18 16 29 29 O 1.41390 * 112.87070 * 359.88514 * 28 19 18 30 30 H 1.09003 * 109.47095 * 299.99881 * 1 2 3 31 31 H 1.09002 * 109.47662 * 60.00275 * 1 2 3 32 32 H 1.08999 * 109.47013 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46620 * 240.00340 * 2 1 3 34 34 H 1.09000 * 109.47005 * 120.00074 * 2 1 3 35 35 H 0.96998 * 120.00015 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99584 * 95.00756 * 13 3 2 37 37 H 1.09005 * 110.78709 * 335.62757 * 18 16 14 38 38 H 1.09001 * 110.95867 * 212.23322 * 18 16 14 39 39 H 1.07991 * 120.01932 * 0.02562 * 21 20 19 40 40 H 1.08000 * 119.89247 * 180.25757 * 22 21 20 41 41 H 1.08002 * 119.87998 * 179.72613 * 23 22 21 42 42 H 1.09005 * 109.47286 * 60.00637 * 26 25 24 43 43 H 1.09006 * 109.47002 * 179.97438 * 26 25 24 44 44 H 1.08996 * 109.47699 * 299.99792 * 26 25 24 45 45 H 1.08002 * 120.10200 * 179.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1240 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3366 -2.1730 9 14 6.0049 0.8813 -1.3819 10 1 6.5548 -0.3501 -0.7604 11 1 6.3828 0.9224 -2.8175 12 1 6.5569 2.0738 -0.6904 13 7 1.6524 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3396 2.6319 0.4344 16 6 0.0367 3.3385 2.6545 17 1 0.0807 2.6386 3.4890 18 6 0.9194 4.5801 2.9259 19 6 0.0966 5.7062 2.3294 20 6 0.5859 7.0641 2.0181 21 6 1.9159 7.4053 2.2728 22 6 2.3708 8.6736 1.9762 23 6 1.5108 9.6128 1.4370 24 6 0.1871 9.2828 1.1799 25 8 -0.6519 10.2084 0.6448 26 6 -0.1045 11.5000 0.3729 27 6 -0.2789 8.0111 1.4688 28 7 -1.1062 5.2753 2.1460 29 8 -1.2743 3.9290 2.5438 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8900 35 1 3.8291 -0.0618 -2.9496 36 1 2.2720 2.1231 1.9977 37 1 1.8794 4.4910 2.4172 38 1 1.0627 4.7303 3.9959 39 1 2.5890 6.6756 2.6978 40 1 3.4006 8.9350 2.1697 41 1 1.8714 10.6054 1.2110 42 1 0.7171 11.4044 -0.3371 43 1 -0.8779 12.1405 -0.0512 44 1 0.2650 11.9404 1.2989 45 1 -1.3086 7.7533 1.2697 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194576046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:02 Heat of formation + Delta-G solvation = -27.818194 kcal Electronic energy + Delta-G solvation = -28269.285548 eV Core-core repulsion = 24254.362916 eV Total energy + Delta-G solvation = -4014.922632 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.73537 -40.14661 -38.43000 -37.56820 -35.06153 -33.55026 -32.60132 -31.54008 -30.99104 -30.20182 -29.93259 -27.58169 -27.04298 -24.65383 -23.52048 -22.96813 -22.41176 -20.59001 -20.02203 -19.41626 -18.12610 -17.63870 -16.64749 -16.38234 -16.15552 -16.02208 -15.92129 -15.49058 -15.20208 -14.79306 -14.31740 -14.14138 -13.92695 -13.78321 -13.36339 -13.20964 -12.88582 -12.69898 -12.57413 -12.35474 -12.14130 -11.93456 -11.74759 -11.47732 -11.41314 -11.28163 -11.20884 -11.03425 -10.85929 -10.75595 -10.40942 -10.25300 -10.19678 -9.65241 -9.11579 -9.06780 -8.68346 -8.53905 -8.42858 -7.90060 -6.15936 -4.26142 0.51136 1.18584 2.12741 2.85073 2.99397 3.20803 3.26694 3.29069 3.31285 3.57363 3.82590 3.96552 4.30393 4.34467 4.49331 4.51127 4.69810 4.79219 4.83342 4.95102 5.03668 5.12817 5.15146 5.17338 5.25117 5.26119 5.47260 5.52767 5.60656 5.78459 5.98330 6.11819 6.23212 6.38437 6.38696 6.44662 6.64684 7.01588 7.09608 7.16786 7.30938 7.34335 7.38621 7.57657 7.67882 7.85485 8.14081 8.56079 8.72058 9.02899 9.41040 10.89334 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011490 B = 0.003174 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.243135 B = 8819.304856 C =10286.038525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.703 5.703 14 C 0.485 3.515 15 O -0.521 6.521 16 C 0.022 3.978 17 H 0.136 0.864 18 C -0.138 4.138 19 C 0.116 3.884 20 C 0.006 3.994 21 C -0.122 4.122 22 C -0.081 4.081 23 C -0.193 4.193 24 C 0.124 3.876 25 O -0.315 6.315 26 C 0.027 3.973 27 C -0.113 4.113 28 N -0.266 5.266 29 O -0.163 6.163 30 H 0.037 0.963 31 H 0.049 0.951 32 H 0.024 0.976 33 H 0.100 0.900 34 H 0.032 0.968 35 H 0.265 0.735 36 H 0.388 0.612 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.056 0.944 43 H 0.100 0.900 44 H 0.055 0.945 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.727 17.972 11.576 21.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.353 5.353 14 C 0.267 3.733 15 O -0.397 6.397 16 C -0.041 4.041 17 H 0.154 0.846 18 C -0.177 4.177 19 C -0.074 4.074 20 C 0.004 3.996 21 C -0.142 4.142 22 C -0.099 4.099 23 C -0.213 4.213 24 C 0.079 3.921 25 O -0.229 6.229 26 C -0.068 4.068 27 C -0.133 4.133 28 N -0.005 5.005 29 O -0.182 6.182 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.118 0.882 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.220 0.780 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.075 0.925 43 H 0.119 0.881 44 H 0.074 0.926 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.725 17.892 10.331 20.839 hybrid contribution 2.383 -0.298 0.471 2.448 sum -0.342 17.594 10.801 20.648 Atomic orbital electron populations 1.21845 0.98284 0.98157 1.01262 1.21943 0.92630 0.99717 1.02345 1.18816 0.94269 0.89200 0.80718 0.93327 1.21189 0.90526 1.39277 1.06344 0.92075 1.24891 0.98615 0.94796 0.95362 1.69896 1.35165 1.37364 1.09345 0.86455 0.84827 0.78423 0.77438 1.20534 1.21063 1.19859 1.46470 1.14143 1.56005 1.18732 1.20428 0.83483 0.80496 0.88894 1.90736 1.50994 1.58545 1.39450 1.23774 0.84779 0.96558 0.98966 0.84618 1.22990 1.01664 0.89317 1.03775 1.24112 0.93148 0.94604 0.95556 1.17471 0.93553 0.88578 0.99960 1.21166 0.94079 0.97294 1.01692 1.20849 0.99564 0.92484 0.97000 1.21395 0.93068 1.01282 1.05536 1.18815 0.89186 0.89418 0.94698 1.86105 1.37665 1.21716 1.77373 1.23079 1.00741 0.82275 1.00718 1.20552 1.01213 0.90285 1.01293 1.78398 1.18081 0.94100 1.09956 1.91304 1.23949 1.16301 1.86665 0.94358 0.93155 0.95724 0.88220 0.94967 0.92498 0.78017 0.86921 0.86920 0.84821 0.84908 0.85113 0.92493 0.88143 0.92602 0.84091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.68 2.24 -69.09 -0.15 6.53 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -13.65 8.73 -34.44 -0.30 -13.95 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.39 11.29 55.43 0.63 -23.77 16 9 Si 0.90 20.10 29.54 -169.99 -5.02 15.07 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 N -0.70 -13.89 4.87 -54.94 -0.27 -14.16 16 14 C 0.48 9.63 5.75 -10.99 -0.06 9.57 16 15 O -0.52 -12.84 13.72 -13.29 -0.18 -13.02 16 16 C 0.02 0.33 4.23 -26.97 -0.11 0.22 16 17 H 0.14 1.57 8.14 -51.93 -0.42 1.15 16 18 C -0.14 -1.64 5.80 -26.48 -0.15 -1.80 16 19 C 0.12 1.67 7.15 -79.42 -0.57 1.10 16 20 C 0.01 0.07 5.87 -105.05 -0.62 -0.54 16 21 C -0.12 -1.25 9.61 -39.15 -0.38 -1.63 16 22 C -0.08 -0.72 10.03 -39.66 -0.40 -1.11 16 23 C -0.19 -1.77 9.03 -39.35 -0.36 -2.13 16 24 C 0.12 1.42 6.68 -39.27 -0.26 1.15 16 25 O -0.32 -3.42 10.49 -19.45 -0.20 -3.62 16 26 C 0.03 0.17 9.81 101.05 0.99 1.16 16 27 C -0.11 -1.48 9.62 -39.01 -0.38 -1.86 16 28 N -0.27 -4.65 12.12 35.30 0.43 -4.23 16 29 O -0.16 -2.97 11.82 -30.22 -0.36 -3.33 16 30 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 31 H 0.05 1.24 7.85 -51.93 -0.41 0.83 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.39 6.32 8.54 -40.82 -0.35 5.97 16 37 H 0.11 1.28 7.60 -51.93 -0.39 0.89 16 38 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.13 1.09 7.36 -52.49 -0.39 0.71 16 40 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.13 0.85 6.28 -52.49 -0.33 0.52 16 42 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 45 H 0.14 1.96 7.83 -52.49 -0.41 1.55 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -33.90 373.75 -8.16 -42.06 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.15 Total: 7.03 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -2.67 Total: -7.68 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.79 Total: -42.15 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.74 Total: -19.97 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.90 -8.16 -42.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194576046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.246 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds