Wall clock time and date at job start Tue Mar 31 2020 17:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47088 * 2 1 4 4 H 1.09001 * 109.47113 * 305.00147 * 3 2 1 5 5 C 1.50695 * 109.46867 * 185.00492 * 3 2 1 6 6 H 1.08004 * 119.99693 * 239.99528 * 5 3 2 7 7 C 1.37877 * 120.00656 * 60.00085 * 5 3 2 8 8 N 1.31517 * 119.99503 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00156 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46882 * 89.99891 * 9 7 5 11 11 H 1.48502 * 109.46969 * 209.99720 * 9 7 5 12 12 H 1.48497 * 109.47275 * 329.99704 * 9 7 5 13 13 N 1.46496 * 109.46843 * 64.99918 * 3 2 1 14 14 C 1.34770 * 120.00395 * 274.99766 * 13 3 2 15 15 O 1.21284 * 119.99757 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00172 * 180.02562 * 14 13 3 17 17 H 1.09000 * 110.86441 * 301.19915 * 16 14 13 18 18 C 1.54742 * 110.97542 * 65.00314 * 16 14 13 19 19 C 1.51688 * 102.54807 * 93.89062 * 18 16 14 20 20 C 1.47653 * 125.86119 * 195.39209 * 19 18 16 21 21 C 1.39652 * 120.12420 * 359.97438 * 20 19 18 22 22 C 1.37962 * 119.96000 * 179.76702 * 21 20 19 23 23 C 1.38287 * 120.20988 * 0.53039 * 22 21 20 24 24 C 1.38822 * 120.24718 * 359.44678 * 23 22 21 25 25 O 1.35909 * 119.98216 * 180.27630 * 24 23 22 26 26 C 1.42894 * 116.99916 * 359.97438 * 25 24 23 27 27 C 1.38490 * 120.03140 * 0.29570 * 24 23 22 28 28 N 1.29076 * 108.27434 * 15.65806 * 19 18 16 29 29 O 1.41390 * 112.87070 * 359.88514 * 28 19 18 30 30 H 1.09003 * 109.47095 * 299.99881 * 1 2 3 31 31 H 1.09002 * 109.47662 * 60.00275 * 1 2 3 32 32 H 1.08999 * 109.47013 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46620 * 240.00340 * 2 1 3 34 34 H 1.09000 * 109.47005 * 120.00074 * 2 1 3 35 35 H 0.96998 * 120.00015 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99584 * 95.00756 * 13 3 2 37 37 H 1.09005 * 110.78709 * 335.62757 * 18 16 14 38 38 H 1.09001 * 110.95867 * 212.23322 * 18 16 14 39 39 H 1.07991 * 120.01932 * 0.02562 * 21 20 19 40 40 H 1.08000 * 119.89247 * 180.25757 * 22 21 20 41 41 H 1.08002 * 119.87998 * 179.72613 * 23 22 21 42 42 H 1.09005 * 109.47286 * 60.00637 * 26 25 24 43 43 H 1.09006 * 109.47002 * 179.97438 * 26 25 24 44 44 H 1.08996 * 109.47699 * 299.99792 * 26 25 24 45 45 H 1.08002 * 120.10200 * 179.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1240 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3366 -2.1730 9 14 6.0049 0.8813 -1.3819 10 1 6.5548 -0.3501 -0.7604 11 1 6.3828 0.9224 -2.8175 12 1 6.5569 2.0738 -0.6904 13 7 1.6524 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3396 2.6319 0.4344 16 6 0.0367 3.3385 2.6545 17 1 0.0807 2.6386 3.4890 18 6 0.9194 4.5801 2.9259 19 6 0.0966 5.7062 2.3294 20 6 0.5859 7.0641 2.0181 21 6 1.9159 7.4053 2.2728 22 6 2.3708 8.6736 1.9762 23 6 1.5108 9.6128 1.4370 24 6 0.1871 9.2828 1.1799 25 8 -0.6519 10.2084 0.6448 26 6 -0.1045 11.5000 0.3729 27 6 -0.2789 8.0111 1.4688 28 7 -1.1062 5.2753 2.1460 29 8 -1.2743 3.9290 2.5438 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8900 35 1 3.8291 -0.0618 -2.9496 36 1 2.2720 2.1231 1.9977 37 1 1.8794 4.4910 2.4172 38 1 1.0627 4.7303 3.9959 39 1 2.5890 6.6756 2.6978 40 1 3.4006 8.9350 2.1697 41 1 1.8714 10.6054 1.2110 42 1 0.7171 11.4044 -0.3371 43 1 -0.8779 12.1405 -0.0512 44 1 0.2650 11.9404 1.2989 45 1 -1.3086 7.7533 1.2697 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194576046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:01 Heat of formation + Delta-G solvation = -50.568053 kcal Electronic energy + Delta-G solvation = -28270.272056 eV Core-core repulsion = 24254.362916 eV Total energy + Delta-G solvation = -4015.909140 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.90191 -41.04066 -39.91550 -38.41657 -36.91187 -34.63703 -34.38225 -33.20581 -31.98278 -31.45784 -30.85295 -28.93698 -28.14409 -25.99977 -24.80379 -24.37779 -23.31063 -22.14244 -21.22361 -21.02784 -19.40450 -18.81449 -17.92611 -17.46179 -17.29801 -17.16627 -16.91445 -16.68237 -16.42719 -16.34709 -15.78264 -15.59005 -14.88059 -14.62059 -14.60302 -14.50699 -14.32528 -14.13245 -13.65314 -13.50255 -13.40832 -13.17165 -12.99605 -12.90797 -12.87295 -12.71632 -12.64696 -12.24742 -12.13322 -12.07675 -11.94669 -11.77882 -11.62118 -11.43545 -11.05676 -10.56311 -10.41185 -9.76682 -9.68842 -9.24618 -8.14517 -6.32567 -0.39958 0.39530 1.15850 1.47262 1.47919 1.58211 1.60563 1.95142 2.25134 2.31620 2.51181 2.75745 2.98781 3.15430 3.30282 3.38350 3.80389 3.85164 3.99556 4.12973 4.17504 4.26896 4.41200 4.41298 4.45284 4.46407 4.50587 4.53537 4.62250 4.67958 4.73450 4.74484 4.90996 5.03189 5.21264 5.22776 5.34249 5.40788 5.41052 5.52676 5.60602 5.66545 5.76949 5.90145 6.15396 6.23580 6.39109 6.75164 6.91269 7.33766 7.52618 8.91053 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011490 B = 0.003174 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.243135 B = 8819.304856 C =10286.038525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.009 1.009 5 C -0.543 4.543 6 H 0.080 0.920 7 C 0.013 3.987 8 N -0.918 5.918 9 Si 0.972 3.028 10 H -0.272 1.272 11 H -0.292 1.292 12 H -0.258 1.258 13 N -0.692 5.692 14 C 0.480 3.520 15 O -0.578 6.578 16 C 0.025 3.975 17 H 0.180 0.820 18 C -0.127 4.127 19 C 0.126 3.874 20 C -0.021 4.021 21 C -0.117 4.117 22 C -0.076 4.076 23 C -0.183 4.183 24 C 0.111 3.889 25 O -0.342 6.342 26 C 0.017 3.983 27 C -0.142 4.142 28 N -0.320 5.320 29 O -0.194 6.194 30 H 0.041 0.959 31 H 0.018 0.982 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.264 0.736 36 H 0.409 0.591 37 H 0.124 0.876 38 H 0.164 0.836 39 H 0.160 0.840 40 H 0.171 0.829 41 H 0.162 0.838 42 H 0.067 0.933 43 H 0.115 0.885 44 H 0.073 0.927 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.846 19.617 14.219 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.009 0.991 5 C -0.581 4.581 6 H 0.098 0.902 7 C -0.187 4.187 8 N -0.557 5.557 9 Si 0.796 3.204 10 H -0.197 1.197 11 H -0.218 1.218 12 H -0.182 1.182 13 N -0.343 5.343 14 C 0.265 3.735 15 O -0.458 6.458 16 C -0.037 4.037 17 H 0.196 0.804 18 C -0.166 4.166 19 C -0.063 4.063 20 C -0.022 4.022 21 C -0.137 4.137 22 C -0.094 4.094 23 C -0.202 4.202 24 C 0.066 3.934 25 O -0.256 6.256 26 C -0.077 4.077 27 C -0.163 4.163 28 N -0.062 5.062 29 O -0.211 6.211 30 H 0.060 0.940 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.245 0.755 37 H 0.142 0.858 38 H 0.182 0.818 39 H 0.178 0.822 40 H 0.189 0.811 41 H 0.180 0.820 42 H 0.085 0.915 43 H 0.133 0.867 44 H 0.092 0.908 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.860 19.544 13.035 23.508 hybrid contribution 1.271 -0.642 -0.406 1.481 sum 2.131 18.902 12.629 22.832 Atomic orbital electron populations 1.21685 0.97485 0.99073 0.99918 1.21799 0.93225 0.99359 1.01598 1.18372 0.93976 0.88959 0.81100 0.99116 1.21559 0.90917 1.38842 1.06769 0.90172 1.25826 1.03436 0.94433 0.95043 1.70073 1.37199 1.38437 1.09977 0.85346 0.78940 0.79091 0.76978 1.19747 1.21816 1.18199 1.46138 1.14848 1.55543 1.17813 1.21389 0.82484 0.79520 0.90119 1.90716 1.52574 1.60459 1.42047 1.23949 0.84697 0.98273 0.96795 0.80352 1.23133 1.00555 0.86168 1.06774 1.24714 0.92756 0.95764 0.93073 1.17643 0.94927 0.87835 1.01789 1.21529 0.92898 0.98587 1.00728 1.21342 1.01122 0.91538 0.95365 1.21798 0.91798 1.02837 1.03791 1.18949 0.90367 0.89003 0.95083 1.86075 1.38839 1.23282 1.77409 1.23398 1.01740 0.80571 1.02014 1.20547 1.00512 0.91963 1.03245 1.78437 1.20315 0.93990 1.13410 1.91269 1.25715 1.17206 1.86946 0.93961 0.96239 0.93491 0.91026 0.93402 0.92736 0.75519 0.85754 0.81819 0.82199 0.81138 0.82020 0.91453 0.86703 0.90795 0.86810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 8.51 71.98 0.61 -5.21 16 2 C -0.12 -5.94 5.45 30.59 0.17 -5.77 16 3 C 0.28 14.02 2.24 44.24 0.10 14.12 16 4 H -0.01 -0.56 7.58 -2.39 -0.02 -0.58 16 5 C -0.54 -27.36 8.73 25.60 0.22 -27.13 16 6 H 0.08 3.64 7.74 -2.91 -0.02 3.62 16 7 C 0.01 0.65 5.29 84.65 0.45 1.10 16 8 N -0.92 -52.25 11.29 21.45 0.24 -52.00 16 9 Si 0.97 40.51 29.54 68.60 2.03 42.54 16 10 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 11 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 13 N -0.69 -26.83 4.87 -446.12 -2.17 -29.00 16 14 C 0.48 19.15 5.75 87.66 0.50 19.66 16 15 O -0.58 -29.96 13.72 14.98 0.21 -29.75 16 16 C 0.02 0.72 4.23 30.44 0.13 0.85 16 17 H 0.18 3.53 8.14 -2.39 -0.02 3.51 16 18 C -0.13 -2.67 5.80 30.76 0.18 -2.49 16 19 C 0.13 3.60 7.15 45.77 0.33 3.93 16 20 C -0.02 -0.52 5.87 -20.14 -0.12 -0.64 16 21 C -0.12 -2.04 9.61 22.55 0.22 -1.82 16 22 C -0.08 -1.04 10.03 22.22 0.22 -0.81 16 23 C -0.18 -2.83 9.03 22.42 0.20 -2.62 16 24 C 0.11 2.50 6.68 22.47 0.15 2.65 16 25 O -0.34 -7.42 10.49 -92.52 -0.97 -8.39 16 26 C 0.02 0.18 9.81 113.37 1.11 1.29 16 27 C -0.14 -3.91 9.62 22.64 0.22 -3.69 16 28 N -0.32 -11.66 12.12 -42.23 -0.51 -12.17 16 29 O -0.19 -7.24 11.82 -20.29 -0.24 -7.48 16 30 H 0.04 1.91 5.64 -2.39 -0.01 1.90 16 31 H 0.02 0.98 7.85 -2.39 -0.02 0.96 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 3.96 5.95 -2.39 -0.01 3.95 16 34 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 36 H 0.41 12.25 8.54 -92.71 -0.79 11.46 16 37 H 0.12 2.36 7.60 -2.38 -0.02 2.34 16 38 H 0.16 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.16 1.85 7.36 -2.91 -0.02 1.83 16 40 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 41 H 0.16 1.42 6.28 -2.91 -0.02 1.40 16 42 H 0.07 0.58 7.66 -2.38 -0.02 0.56 16 43 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.07 0.52 7.66 -2.39 -0.02 0.51 16 45 H 0.11 3.60 7.83 -2.91 -0.02 3.58 16 Total: -1.00 -81.30 373.75 3.51 -77.80 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.23 Total: 25.05 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 4.69 Total: -6.59 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -2.44 Total: -93.18 kcal Atomic # 8 Polarization: -44.61 SS G_CDS: -1.01 Total: -45.62 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -81.30 3.51 -77.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194576046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.229 kcal (2) G-P(sol) polarization free energy of solvation -81.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds