Wall clock time and date at job start Tue Mar 31 2020 17:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46982 * 2 1 4 4 N 1.46492 * 109.46790 * 175.27163 * 3 2 1 5 5 C 1.36939 * 120.00331 * 85.73007 * 4 3 2 6 6 H 1.08005 * 119.99777 * 4.43404 * 5 4 3 7 7 C 1.38810 * 120.00599 * 184.43211 * 5 4 3 8 8 N 1.31620 * 119.99425 * 34.50628 * 7 5 4 9 9 Si 1.86799 * 120.00192 * 214.50728 * 7 5 4 10 10 H 1.48505 * 109.46907 * 90.00221 * 9 7 5 11 11 H 1.48499 * 109.47074 * 209.99960 * 9 7 5 12 12 H 1.48496 * 109.47239 * 329.99855 * 9 7 5 13 13 C 1.46505 * 120.00318 * 265.44488 * 4 3 2 14 14 C 1.52990 * 109.47539 * 261.24238 * 13 4 3 15 15 H 1.09007 * 109.47327 * 53.50905 * 14 13 4 16 16 O 1.42898 * 109.47541 * 293.50571 * 14 13 4 17 17 C 1.53001 * 109.47295 * 173.50795 * 14 13 4 18 18 N 1.46503 * 109.47296 * 184.99996 * 17 14 13 19 19 C 1.34518 * 124.45982 * 269.69400 * 18 17 14 20 20 O 1.21446 * 125.71081 * 0.04265 * 19 18 17 21 21 C 1.47817 * 108.58004 * 179.90423 * 19 18 17 22 22 C 1.38566 * 134.29836 * 180.12576 * 21 19 18 23 23 C 1.38607 * 119.71961 * 180.29146 * 22 21 19 24 24 C 1.38228 * 120.45877 * 359.95933 * 23 22 21 25 25 C 1.38616 * 120.46116 * 0.02562 * 24 23 22 26 26 C 1.38560 * 119.71467 * 0.02562 * 25 24 23 27 27 C 1.34525 * 124.45686 * 90.00020 * 18 17 14 28 28 O 1.21447 * 125.71449 * 359.94004 * 27 18 17 29 29 H 1.08996 * 109.46963 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47127 * 300.00577 * 1 2 3 31 31 H 1.08997 * 109.46867 * 60.00006 * 1 2 3 32 32 H 1.08994 * 109.47100 * 239.99923 * 2 1 3 33 33 H 1.08998 * 109.47085 * 119.99243 * 2 1 3 34 34 H 1.09002 * 109.47081 * 55.26868 * 3 2 1 35 35 H 1.09001 * 109.46942 * 295.27657 * 3 2 1 36 36 H 0.97002 * 119.99714 * 179.97438 * 8 7 5 37 37 H 1.09007 * 109.46236 * 21.24467 * 13 4 3 38 38 H 1.08995 * 109.47041 * 141.23589 * 13 4 3 39 39 H 0.96701 * 114.00451 * 281.36793 * 16 14 13 40 40 H 1.09002 * 109.46705 * 304.99782 * 17 14 13 41 41 H 1.08996 * 109.47046 * 64.99905 * 17 14 13 42 42 H 1.08004 * 120.14140 * 0.25205 * 22 21 19 43 43 H 1.08005 * 119.77110 * 179.97438 * 23 22 21 44 44 H 1.08003 * 119.77099 * 180.02562 * 24 23 22 45 45 H 1.07993 * 120.14237 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5005 1.4441 0.1139 5 6 4.2750 1.3241 -1.0091 6 1 3.8119 1.3003 -1.9845 7 6 5.6553 1.2329 -0.8938 8 7 6.1899 0.6061 0.1326 9 14 6.7540 1.9998 -2.1955 10 1 7.0640 3.4022 -1.8179 11 1 8.0161 1.2241 -2.2975 12 1 6.0552 1.9828 -3.5057 13 6 4.1327 1.5803 1.4284 14 6 4.5613 3.0336 1.6402 15 1 3.7082 3.6918 1.4751 16 8 5.6021 3.3626 0.7180 17 6 5.0730 3.2112 3.0711 18 7 5.3710 4.6253 3.3113 19 6 6.5672 5.1994 3.0896 20 8 7.5558 4.6364 2.6645 21 6 6.4761 6.6308 3.4468 22 6 7.3668 7.6921 3.4256 23 6 6.9515 8.9462 3.8452 24 6 5.6557 9.1449 4.2834 25 6 4.7536 8.0928 4.3098 26 6 5.1551 6.8334 3.8943 27 6 4.4862 5.5194 3.7880 28 8 3.3312 5.2861 4.0821 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.6091 1.9803 0.8446 35 1 1.7474 1.9314 -0.9293 36 1 7.1545 0.5420 0.2130 37 1 3.4226 1.2941 2.2044 38 1 5.0076 0.9323 1.4797 39 1 6.4742 3.0332 0.9752 40 1 4.3100 2.8763 3.7739 41 1 5.9785 2.6205 3.2091 42 1 8.3805 7.5427 3.0842 43 1 7.6452 9.7739 3.8294 44 1 5.3438 10.1269 4.6075 45 1 3.7426 8.2537 4.6535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194970390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:37 Heat of formation + Delta-G solvation = -35.035335 kcal Electronic energy + Delta-G solvation = -29312.582953 eV Core-core repulsion = 25297.347363 eV Total energy + Delta-G solvation = -4015.235591 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.26920 -38.71841 -38.51008 -37.20026 -35.74334 -34.99112 -32.72255 -32.18815 -31.38177 -30.70516 -29.17671 -26.21827 -25.45408 -25.12748 -23.48614 -22.25217 -22.01737 -20.97337 -19.86765 -19.79961 -17.84325 -17.39939 -16.84738 -16.64068 -16.16870 -15.38468 -15.25976 -14.82694 -14.59442 -14.37446 -14.24455 -14.24058 -14.14418 -13.86014 -13.75903 -13.31231 -12.94312 -12.83893 -12.58906 -12.46751 -11.91501 -11.72510 -11.50121 -11.25511 -11.04058 -10.74648 -10.62081 -10.58464 -10.45661 -10.24148 -10.14633 -9.93128 -9.77219 -9.59154 -9.57769 -9.47624 -9.42033 -8.91542 -8.33535 -6.69452 -5.60383 -2.94073 -0.05714 0.72601 1.92841 2.42718 3.03877 3.38622 3.54520 3.56417 3.62440 3.71334 4.25552 4.38041 4.57905 4.66275 4.78930 4.96350 5.06813 5.15125 5.24859 5.46956 5.48339 5.55181 5.58528 5.69703 5.70901 5.72552 5.82160 5.83598 5.89571 5.92995 6.13329 6.24740 6.31291 6.39072 6.46411 6.51836 6.60931 6.69308 6.81556 6.92033 6.98213 7.17821 7.27055 7.75424 7.83213 7.90235 8.52583 8.78849 9.31242 10.03039 10.42320 11.33312 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012849 B = 0.004012 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.593959 B = 6976.900270 C = 8444.472549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.143 4.143 3 C 0.150 3.850 4 N -0.583 5.583 5 C -0.242 4.242 6 H 0.070 0.930 7 C 0.024 3.976 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.302 1.302 12 H -0.288 1.288 13 C 0.097 3.903 14 C 0.087 3.913 15 H 0.072 0.928 16 O -0.532 6.532 17 C 0.074 3.926 18 N -0.565 5.565 19 C 0.573 3.427 20 O -0.453 6.453 21 C -0.133 4.133 22 C -0.049 4.049 23 C -0.099 4.099 24 C -0.101 4.101 25 C -0.048 4.048 26 C -0.138 4.138 27 C 0.573 3.427 28 O -0.466 6.466 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.037 0.963 35 H 0.040 0.960 36 H 0.251 0.749 37 H 0.021 0.979 38 H 0.139 0.861 39 H 0.365 0.635 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 14.627 11.526 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.183 4.183 3 C 0.023 3.977 4 N -0.302 5.302 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.172 4.172 8 N -0.541 5.541 9 Si 0.721 3.279 10 H -0.210 1.210 11 H -0.229 1.229 12 H -0.214 1.214 13 C -0.031 4.031 14 C 0.023 3.977 15 H 0.090 0.910 16 O -0.337 6.337 17 C -0.046 4.046 18 N -0.306 5.306 19 C 0.361 3.639 20 O -0.324 6.324 21 C -0.136 4.136 22 C -0.067 4.067 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.067 4.067 26 C -0.141 4.141 27 C 0.361 3.639 28 O -0.338 6.338 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.040 0.960 38 H 0.155 0.845 39 H 0.212 0.788 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.159 0.841 43 H 0.158 0.842 44 H 0.157 0.843 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.325 14.323 11.109 18.174 hybrid contribution 0.910 0.205 -0.347 0.995 sum -0.414 14.527 10.762 18.084 Atomic orbital electron populations 1.21748 0.97562 1.00383 1.00842 1.22163 0.93364 1.00918 1.01870 1.20850 0.84769 0.93480 0.98627 1.43931 0.99423 1.83059 1.03746 1.19031 0.88373 1.43794 0.85783 0.91237 1.24234 0.96301 0.99593 0.97104 1.69720 1.10231 1.41496 1.32640 0.86509 0.79570 0.80681 0.81123 1.21036 1.22947 1.21396 1.22194 1.01009 0.94740 0.85126 1.23007 0.90341 1.00527 0.83775 0.90982 1.86591 1.18683 1.79318 1.49105 1.22907 1.03569 0.76548 1.01576 1.46598 1.12536 1.12340 1.59152 1.18294 0.82494 0.86588 0.76494 1.90810 1.32516 1.69948 1.39121 1.20702 0.95493 0.94727 1.02711 1.20816 0.99562 0.90626 0.95734 1.21435 0.96450 0.96753 0.97074 1.21424 0.93239 0.99059 0.98213 1.20786 1.00443 0.89797 0.95695 1.20679 0.95144 0.94944 1.03358 1.18353 0.85007 0.84787 0.75720 1.90789 1.15088 1.82602 1.45341 0.93804 0.93510 0.93397 0.92267 0.92841 0.94503 0.94158 0.93875 0.96045 0.84517 0.78754 0.88468 0.88154 0.84076 0.84237 0.84255 0.84161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 37.16 0.37 -1.87 16 2 C -0.14 -2.72 6.24 -26.72 -0.17 -2.89 16 3 C 0.15 3.15 5.64 -4.04 -0.02 3.13 16 4 N -0.58 -14.37 2.56 -173.24 -0.44 -14.81 16 5 C -0.24 -6.64 9.29 -15.06 -0.14 -6.78 16 6 H 0.07 1.94 8.02 -52.48 -0.42 1.52 16 7 C 0.02 0.67 3.05 -17.43 -0.05 0.62 16 8 N -0.89 -24.34 9.86 55.49 0.55 -23.79 16 9 Si 0.89 22.74 29.05 -169.99 -4.94 17.80 16 10 H -0.28 -7.48 7.11 56.52 0.40 -7.08 16 11 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 C 0.10 2.22 5.03 -4.04 -0.02 2.19 16 14 C 0.09 1.83 3.50 -26.74 -0.09 1.74 16 15 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 16 O -0.53 -12.78 9.84 -35.23 -0.35 -13.13 16 17 C 0.07 1.30 5.23 -4.04 -0.02 1.28 16 18 N -0.57 -9.42 2.59 -117.61 -0.30 -9.73 16 19 C 0.57 9.48 7.74 -12.46 -0.10 9.38 16 20 O -0.45 -8.58 17.03 5.41 0.09 -8.49 16 21 C -0.13 -1.75 6.40 -104.83 -0.67 -2.42 16 22 C -0.05 -0.48 10.09 -39.32 -0.40 -0.88 16 23 C -0.10 -0.69 10.04 -39.45 -0.40 -1.09 16 24 C -0.10 -0.69 10.04 -39.45 -0.40 -1.09 16 25 C -0.05 -0.45 10.09 -39.32 -0.40 -0.85 16 26 C -0.14 -1.77 6.40 -104.83 -0.67 -2.44 16 27 C 0.57 9.08 8.02 -12.45 -0.10 8.98 16 28 O -0.47 -8.25 17.68 5.41 0.10 -8.15 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.04 0.73 8.03 -51.93 -0.42 0.31 16 35 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 36 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 37 H 0.02 0.45 8.00 -51.93 -0.42 0.03 16 38 H 0.14 3.50 4.82 -51.94 -0.25 3.25 16 39 H 0.37 8.81 7.57 45.56 0.34 9.15 16 40 H 0.10 1.54 7.97 -51.93 -0.41 1.13 16 41 H 0.10 1.73 7.91 -51.93 -0.41 1.32 16 42 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 43 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 44 H 0.14 0.51 8.06 -52.48 -0.42 0.08 16 45 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 376.43 15.07 5.67 5.67 Total: -1.00 -31.90 376.43 -8.67 -40.56 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.77 Total: 7.04 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -3.27 Total: 7.02 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.20 Total: -48.33 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.16 Total: -29.77 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.94 Total: 17.80 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.90 -8.67 -40.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194970390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.526 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds