Wall clock time and date at job start Tue Mar 31 2020 17:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46982 * 2 1 4 4 N 1.46492 * 109.46790 * 175.27163 * 3 2 1 5 5 C 1.36939 * 120.00331 * 85.73007 * 4 3 2 6 6 H 1.08005 * 119.99777 * 4.43404 * 5 4 3 7 7 C 1.38810 * 120.00599 * 184.43211 * 5 4 3 8 8 N 1.31620 * 119.99425 * 34.50628 * 7 5 4 9 9 Si 1.86799 * 120.00192 * 214.50728 * 7 5 4 10 10 H 1.48505 * 109.46907 * 90.00221 * 9 7 5 11 11 H 1.48499 * 109.47074 * 209.99960 * 9 7 5 12 12 H 1.48496 * 109.47239 * 329.99855 * 9 7 5 13 13 C 1.46505 * 120.00318 * 265.44488 * 4 3 2 14 14 C 1.52990 * 109.47539 * 261.24238 * 13 4 3 15 15 H 1.09007 * 109.47327 * 53.50905 * 14 13 4 16 16 O 1.42898 * 109.47541 * 293.50571 * 14 13 4 17 17 C 1.53001 * 109.47295 * 173.50795 * 14 13 4 18 18 N 1.46503 * 109.47296 * 184.99996 * 17 14 13 19 19 C 1.34518 * 124.45982 * 269.69400 * 18 17 14 20 20 O 1.21446 * 125.71081 * 0.04265 * 19 18 17 21 21 C 1.47817 * 108.58004 * 179.90423 * 19 18 17 22 22 C 1.38566 * 134.29836 * 180.12576 * 21 19 18 23 23 C 1.38607 * 119.71961 * 180.29146 * 22 21 19 24 24 C 1.38228 * 120.45877 * 359.95933 * 23 22 21 25 25 C 1.38616 * 120.46116 * 0.02562 * 24 23 22 26 26 C 1.38560 * 119.71467 * 0.02562 * 25 24 23 27 27 C 1.34525 * 124.45686 * 90.00020 * 18 17 14 28 28 O 1.21447 * 125.71449 * 359.94004 * 27 18 17 29 29 H 1.08996 * 109.46963 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47127 * 300.00577 * 1 2 3 31 31 H 1.08997 * 109.46867 * 60.00006 * 1 2 3 32 32 H 1.08994 * 109.47100 * 239.99923 * 2 1 3 33 33 H 1.08998 * 109.47085 * 119.99243 * 2 1 3 34 34 H 1.09002 * 109.47081 * 55.26868 * 3 2 1 35 35 H 1.09001 * 109.46942 * 295.27657 * 3 2 1 36 36 H 0.97002 * 119.99714 * 179.97438 * 8 7 5 37 37 H 1.09007 * 109.46236 * 21.24467 * 13 4 3 38 38 H 1.08995 * 109.47041 * 141.23589 * 13 4 3 39 39 H 0.96701 * 114.00451 * 281.36793 * 16 14 13 40 40 H 1.09002 * 109.46705 * 304.99782 * 17 14 13 41 41 H 1.08996 * 109.47046 * 64.99905 * 17 14 13 42 42 H 1.08004 * 120.14140 * 0.25205 * 22 21 19 43 43 H 1.08005 * 119.77110 * 179.97438 * 23 22 21 44 44 H 1.08003 * 119.77099 * 180.02562 * 24 23 22 45 45 H 1.07993 * 120.14237 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5005 1.4441 0.1139 5 6 4.2750 1.3241 -1.0091 6 1 3.8119 1.3003 -1.9845 7 6 5.6553 1.2329 -0.8938 8 7 6.1899 0.6061 0.1326 9 14 6.7540 1.9998 -2.1955 10 1 7.0640 3.4022 -1.8179 11 1 8.0161 1.2241 -2.2975 12 1 6.0552 1.9828 -3.5057 13 6 4.1327 1.5803 1.4284 14 6 4.5613 3.0336 1.6402 15 1 3.7082 3.6918 1.4751 16 8 5.6021 3.3626 0.7180 17 6 5.0730 3.2112 3.0711 18 7 5.3710 4.6253 3.3113 19 6 6.5672 5.1994 3.0896 20 8 7.5558 4.6364 2.6645 21 6 6.4761 6.6308 3.4468 22 6 7.3668 7.6921 3.4256 23 6 6.9515 8.9462 3.8452 24 6 5.6557 9.1449 4.2834 25 6 4.7536 8.0928 4.3098 26 6 5.1551 6.8334 3.8943 27 6 4.4862 5.5194 3.7880 28 8 3.3312 5.2861 4.0821 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.6091 1.9803 0.8446 35 1 1.7474 1.9314 -0.9293 36 1 7.1545 0.5420 0.2130 37 1 3.4226 1.2941 2.2044 38 1 5.0076 0.9323 1.4797 39 1 6.4742 3.0332 0.9752 40 1 4.3100 2.8763 3.7739 41 1 5.9785 2.6205 3.2091 42 1 8.3805 7.5427 3.0842 43 1 7.6452 9.7739 3.8294 44 1 5.3438 10.1269 4.6075 45 1 3.7426 8.2537 4.6535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194970390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:36 Heat of formation + Delta-G solvation = -55.453938 kcal Electronic energy + Delta-G solvation = -29313.468370 eV Core-core repulsion = 25297.347363 eV Total energy + Delta-G solvation = -4016.121008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.41054 -39.80020 -39.68780 -38.87496 -37.20702 -36.57265 -34.49708 -33.42754 -32.48842 -32.12115 -30.66567 -27.67979 -27.27424 -26.20668 -24.77405 -23.45287 -23.20918 -22.57578 -21.58650 -20.98228 -19.05014 -18.81101 -18.28539 -18.01101 -17.40419 -16.96851 -16.45682 -16.37471 -16.08664 -15.78383 -15.62919 -15.56180 -15.40476 -15.18153 -15.04571 -15.01083 -14.62319 -14.04637 -13.72871 -13.35822 -13.24763 -13.19152 -13.04205 -12.76932 -12.67746 -12.56882 -12.33787 -12.13941 -12.05127 -11.82259 -11.71777 -11.62201 -11.45763 -11.37775 -11.18765 -10.71051 -10.37808 -10.22059 -10.15562 -8.70679 -7.68611 -5.04364 -1.02162 -0.00803 0.97736 1.21317 1.46152 1.53921 1.60217 1.82345 2.57234 2.59594 2.63793 3.19112 3.33005 3.47014 3.59998 3.67060 3.92001 4.05743 4.07582 4.18249 4.18386 4.21910 4.27194 4.34388 4.39299 4.48251 4.60216 4.70193 4.77301 4.83960 4.86130 4.90732 4.96074 5.03808 5.19667 5.21632 5.23863 5.26284 5.40618 5.55807 5.57845 5.70910 5.72132 5.89760 6.07284 6.49535 6.51356 6.90020 7.26249 8.01552 8.37752 9.20416 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012849 B = 0.004012 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.593959 B = 6976.900270 C = 8444.472549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.146 3.854 4 N -0.599 5.599 5 C -0.255 4.255 6 H 0.057 0.943 7 C 0.001 3.999 8 N -0.901 5.901 9 Si 0.929 3.071 10 H -0.297 1.297 11 H -0.301 1.301 12 H -0.287 1.287 13 C 0.099 3.901 14 C 0.096 3.904 15 H 0.058 0.942 16 O -0.549 6.549 17 C 0.085 3.915 18 N -0.574 5.574 19 C 0.566 3.434 20 O -0.493 6.493 21 C -0.160 4.160 22 C -0.050 4.050 23 C -0.081 4.081 24 C -0.081 4.081 25 C -0.044 4.044 26 C -0.160 4.160 27 C 0.569 3.431 28 O -0.495 6.495 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.042 0.958 34 H 0.051 0.949 35 H 0.035 0.965 36 H 0.248 0.752 37 H 0.039 0.961 38 H 0.116 0.884 39 H 0.361 0.639 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.150 0.850 43 H 0.183 0.817 44 H 0.186 0.814 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.432 17.822 12.889 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.173 4.173 3 C 0.020 3.980 4 N -0.318 5.318 5 C -0.383 4.383 6 H 0.075 0.925 7 C -0.196 4.196 8 N -0.549 5.549 9 Si 0.762 3.238 10 H -0.225 1.225 11 H -0.229 1.229 12 H -0.213 1.213 13 C -0.028 4.028 14 C 0.033 3.967 15 H 0.076 0.924 16 O -0.353 6.353 17 C -0.037 4.037 18 N -0.314 5.314 19 C 0.357 3.643 20 O -0.366 6.366 21 C -0.164 4.164 22 C -0.068 4.068 23 C -0.099 4.099 24 C -0.099 4.099 25 C -0.063 4.063 26 C -0.163 4.163 27 C 0.360 3.640 28 O -0.369 6.369 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.133 0.867 39 H 0.208 0.792 40 H 0.131 0.869 41 H 0.116 0.884 42 H 0.168 0.832 43 H 0.201 0.799 44 H 0.203 0.797 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.915 17.530 12.484 21.605 hybrid contribution 1.067 -0.649 -0.730 1.447 sum -0.847 16.881 11.753 20.587 Atomic orbital electron populations 1.21662 0.94119 1.01883 1.01923 1.21989 0.96305 0.98783 1.00247 1.21001 0.83053 0.94958 0.98969 1.44112 1.00800 1.83397 1.03536 1.19100 0.89018 1.43880 0.86328 0.92497 1.24539 0.96791 1.00034 0.98209 1.69827 1.10044 1.41814 1.33201 0.85883 0.78676 0.79263 0.80025 1.22507 1.22913 1.21322 1.22081 1.00492 0.95218 0.85026 1.22796 0.89331 0.99013 0.85553 0.92381 1.86555 1.18892 1.79468 1.50400 1.22581 1.03726 0.77937 0.99406 1.46644 1.13298 1.12031 1.59470 1.18955 0.81714 0.88280 0.75346 1.90770 1.33551 1.71131 1.41170 1.20560 0.96837 0.93269 1.05710 1.21175 0.99536 0.90918 0.95188 1.21967 0.97300 0.96286 0.94309 1.21986 0.92323 0.99951 0.95602 1.21198 1.01928 0.88793 0.94341 1.20549 0.94599 0.94791 1.06398 1.18901 0.84550 0.85943 0.74607 1.90754 1.16057 1.83299 1.46757 0.92124 0.92156 0.92584 0.94460 0.93875 0.93029 0.94629 0.94117 0.94299 0.86712 0.79195 0.86922 0.88395 0.83197 0.79936 0.79692 0.82470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.91 71.98 0.71 -3.21 16 2 C -0.13 -5.04 6.24 30.60 0.19 -4.85 16 3 C 0.15 6.18 5.64 86.38 0.49 6.66 16 4 N -0.60 -30.18 2.56 -702.00 -1.80 -31.97 16 5 C -0.25 -14.34 9.29 84.03 0.78 -13.56 16 6 H 0.06 3.28 8.02 -2.91 -0.02 3.26 16 7 C 0.00 0.03 3.05 84.86 0.26 0.29 16 8 N -0.90 -50.43 9.86 21.65 0.21 -50.22 16 9 Si 0.93 47.88 29.05 68.60 1.99 49.88 16 10 H -0.30 -15.90 7.11 99.48 0.71 -15.19 16 11 H -0.30 -15.41 7.11 99.48 0.71 -14.71 16 12 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 13 C 0.10 4.65 5.03 86.37 0.43 5.08 16 14 C 0.10 4.20 3.50 30.59 0.11 4.30 16 15 H 0.06 2.71 8.14 -2.38 -0.02 2.69 16 16 O -0.55 -27.47 9.84 -148.98 -1.47 -28.93 16 17 C 0.08 3.08 5.23 86.38 0.45 3.53 16 18 N -0.57 -19.94 2.59 -762.95 -1.97 -21.91 16 19 C 0.57 19.54 7.74 86.82 0.67 20.21 16 20 O -0.49 -19.72 17.03 -3.55 -0.06 -19.78 16 21 C -0.16 -4.16 6.40 -20.00 -0.13 -4.29 16 22 C -0.05 -0.86 10.09 22.44 0.23 -0.63 16 23 C -0.08 -0.72 10.04 22.36 0.22 -0.50 16 24 C -0.08 -0.66 10.04 22.36 0.22 -0.44 16 25 C -0.04 -0.68 10.09 22.44 0.23 -0.45 16 26 C -0.16 -3.96 6.40 -20.00 -0.13 -4.09 16 27 C 0.57 18.41 8.02 86.82 0.70 19.11 16 28 O -0.49 -17.79 17.68 -3.55 -0.06 -17.86 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.05 2.01 8.03 -2.39 -0.02 1.99 16 35 H 0.04 1.52 8.07 -2.39 -0.02 1.50 16 36 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 37 H 0.04 1.65 8.00 -2.38 -0.02 1.63 16 38 H 0.12 6.06 4.82 -2.40 -0.01 6.05 16 39 H 0.36 18.38 7.57 -74.06 -0.56 17.82 16 40 H 0.11 3.68 7.97 -2.39 -0.02 3.66 16 41 H 0.10 3.59 7.91 -2.39 -0.02 3.57 16 42 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 43 H 0.18 0.16 8.06 -2.91 -0.02 0.13 16 44 H 0.19 -0.05 8.06 -2.91 -0.02 -0.07 16 45 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -73.26 376.43 2.73 -70.52 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.45 Total: 23.10 kcal Atomic # 6 Polarization: 21.73 SS G_CDS: 5.44 Total: 27.17 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -3.56 Total: -104.10 kcal Atomic # 8 Polarization: -64.98 SS G_CDS: -1.59 Total: -66.57 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 1.99 Total: 49.88 kcal Total: -73.26 2.73 -70.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194970390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.069 kcal (2) G-P(sol) polarization free energy of solvation -73.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds