Wall clock time and date at job start Tue Mar 31 2020 17:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00091 * 2 1 4 4 C 1.38130 * 119.99997 * 359.71741 * 3 2 1 5 5 C 1.39791 * 119.84321 * 179.77180 * 4 3 2 6 6 C 1.47496 * 120.07554 * 180.27829 * 5 4 3 7 7 O 1.21626 * 120.00092 * 312.67509 * 6 5 4 8 8 N 1.34779 * 119.99988 * 132.67960 * 6 5 4 9 9 C 1.36903 * 119.99719 * 185.35799 * 8 6 5 10 10 H 1.08001 * 120.00390 * 321.56185 * 9 8 6 11 11 C 1.39021 * 119.99515 * 141.55895 * 9 8 6 12 12 N 1.31386 * 119.99553 * 160.21499 * 11 9 8 13 13 Si 1.86801 * 120.00513 * 340.21753 * 11 9 8 14 14 H 1.48502 * 109.47116 * 95.32904 * 13 11 9 15 15 H 1.48500 * 109.47350 * 215.33278 * 13 11 9 16 16 H 1.48498 * 109.46596 * 335.33236 * 13 11 9 17 17 C 1.46494 * 120.00031 * 5.35419 * 8 6 5 18 18 C 1.47201 * 109.46750 * 94.83306 * 17 8 6 19 19 N 7.68473 * 114.52185 * 4.70494 * 2 1 3 20 20 C 1.39774 * 119.85009 * 0.52989 * 5 4 3 21 21 C 1.37777 * 119.99421 * 359.73008 * 20 5 4 22 22 C 1.38853 * 120.15503 * 359.97438 * 21 20 5 23 23 O 1.35800 * 119.92182 * 180.02562 * 22 21 20 24 24 C 1.42905 * 117.00050 * 0.02897 * 23 22 21 25 25 C 1.53001 * 109.47298 * 179.97438 * 24 23 22 26 26 C 1.53002 * 109.46855 * 64.99766 * 25 24 23 27 27 C 1.52996 * 109.47296 * 184.99931 * 25 24 23 28 28 H 1.08999 * 109.47340 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46687 * 60.00380 * 1 2 3 30 30 H 1.08995 * 109.47515 * 300.00375 * 1 2 3 31 31 H 1.07994 * 120.07419 * 0.02718 * 4 3 2 32 32 H 0.97000 * 119.99729 * 179.97438 * 12 11 9 33 33 H 1.08997 * 109.47614 * 214.83219 * 17 8 6 34 34 H 1.08998 * 109.47228 * 334.83909 * 17 8 6 35 35 H 1.07998 * 120.00540 * 179.69763 * 20 5 4 36 36 H 1.07998 * 119.92153 * 179.97438 * 21 20 5 37 37 H 1.09004 * 109.46732 * 299.99586 * 24 23 22 38 38 H 1.09000 * 109.47213 * 59.99673 * 24 23 22 39 39 H 1.08997 * 109.46615 * 305.00020 * 25 24 23 40 40 H 1.09004 * 109.47164 * 299.99948 * 26 25 24 41 41 H 1.08994 * 109.47055 * 60.00213 * 26 25 24 42 42 H 1.09000 * 109.46439 * 180.02562 * 26 25 24 43 43 H 1.09000 * 109.47210 * 59.99605 * 27 25 24 44 44 H 1.08996 * 109.47170 * 179.97438 * 27 25 24 45 45 H 1.09001 * 109.46727 * 299.99992 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2942 2.3701 -0.0059 5 6 1.9322 3.6139 -0.0011 6 6 1.1339 4.8542 -0.0011 7 8 0.2070 4.9808 -0.7784 8 7 1.4316 5.8473 0.8601 9 6 0.6258 6.9514 0.9367 10 1 0.1905 7.3656 0.0392 11 6 0.3678 7.5394 2.1697 12 7 -0.0595 8.7804 2.2290 13 14 0.6286 6.5652 3.7421 14 1 1.9772 6.8606 4.2894 15 1 -0.4044 6.9470 4.7382 16 1 0.5206 5.1136 3.4485 17 6 2.6173 5.7451 1.7144 18 6 3.7468 6.4354 1.0704 19 7 4.6185 6.9680 0.5735 20 6 3.3284 3.6796 -0.0015 21 6 4.0725 2.5201 -0.0010 22 6 3.4387 1.2846 0.0004 23 8 4.1768 0.1447 0.0013 24 6 5.5982 0.2921 0.0015 25 6 6.2543 -1.0901 0.0032 26 6 5.9225 -1.8137 -1.3034 27 6 7.7711 -0.9345 0.1291 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 0.5139 0.8899 31 1 0.2156 2.3150 -0.0101 32 1 -0.2398 9.1906 3.0893 33 1 2.4110 6.2081 2.6793 34 1 2.8696 4.6950 1.8617 35 1 3.8239 4.6392 -0.0027 36 1 5.1512 2.5722 -0.0018 37 1 5.9067 0.8400 -0.8890 38 1 5.9064 0.8414 0.8911 39 1 5.8774 -1.6700 0.8456 40 1 4.8418 -1.9246 -1.3930 41 1 6.2993 -1.2338 -2.1457 42 1 6.3896 -2.7986 -1.3018 43 1 8.0075 -0.4188 1.0599 44 1 8.2385 -1.9191 0.1308 45 1 8.1479 -0.3545 -0.7134 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195452842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:51 Heat of formation + Delta-G solvation = -34.646000 kcal Electronic energy + Delta-G solvation = -28683.778589 eV Core-core repulsion = 24668.559881 eV Total energy + Delta-G solvation = -4015.218708 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.72390 -39.30419 -38.68635 -36.65217 -36.40670 -35.35803 -34.76861 -32.32544 -30.36934 -30.19353 -27.94268 -27.47020 -27.34491 -26.86208 -25.20317 -22.74310 -22.30102 -20.45369 -19.78509 -18.72529 -18.40006 -17.46402 -16.83223 -16.53774 -16.28497 -15.83985 -15.77680 -15.57994 -15.05445 -14.62586 -14.41217 -14.38100 -14.00927 -13.62750 -13.44547 -13.30555 -13.04715 -12.79212 -12.62113 -12.52243 -12.49709 -12.42880 -12.23281 -11.91018 -11.70628 -11.53803 -11.48488 -11.35336 -11.23001 -11.12064 -10.96595 -10.81792 -10.77782 -10.47060 -10.07568 -9.35701 -8.91357 -8.69624 -8.15388 -7.76519 -6.57985 -4.20590 1.16761 1.36749 2.83942 2.95193 3.01847 3.04314 3.08266 3.17269 3.24461 3.37511 3.82033 3.94840 4.21540 4.41713 4.46766 4.52225 4.75075 4.78387 4.88934 4.92874 5.04130 5.13213 5.16830 5.19763 5.21281 5.28055 5.33723 5.37458 5.39585 5.41201 5.52765 5.54522 5.61620 5.62093 5.68344 5.74573 5.96107 6.04196 6.08880 6.22610 6.50281 6.59933 7.02586 7.29109 7.55256 7.88023 8.02818 8.23259 8.69253 9.04040 9.42548 10.52945 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.003544 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.314537 B = 7898.755762 C = 8904.142189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.307 6.307 3 C 0.095 3.905 4 C -0.126 4.126 5 C -0.105 4.105 6 C 0.516 3.484 7 O -0.540 6.540 8 N -0.452 5.452 9 C -0.325 4.325 10 H 0.114 0.886 11 C 0.065 3.935 12 N -0.850 5.850 13 Si 0.860 3.140 14 H -0.267 1.267 15 H -0.278 1.278 16 H -0.254 1.254 17 C 0.173 3.827 18 C 0.208 3.792 19 N -0.434 5.434 20 C -0.104 4.104 21 C -0.175 4.175 22 C 0.109 3.891 23 O -0.301 6.301 24 C 0.059 3.941 25 C -0.094 4.094 26 C -0.147 4.147 27 C -0.146 4.146 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.144 0.856 32 H 0.278 0.722 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.136 0.864 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.038 -20.309 0.648 22.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.221 6.221 3 C 0.050 3.950 4 C -0.146 4.146 5 C -0.108 4.108 6 C 0.305 3.695 7 O -0.419 6.419 8 N -0.174 5.174 9 C -0.451 4.451 10 H 0.131 0.869 11 C -0.143 4.143 12 N -0.484 5.484 13 Si 0.687 3.313 14 H -0.195 1.195 15 H -0.204 1.204 16 H -0.178 1.178 17 C 0.046 3.954 18 C -0.111 4.111 19 N -0.113 5.113 20 C -0.123 4.123 21 C -0.194 4.194 22 C 0.063 3.937 23 O -0.214 6.214 24 C -0.016 4.016 25 C -0.112 4.112 26 C -0.205 4.205 27 C -0.204 4.204 28 H 0.117 0.883 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.162 0.838 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.136 0.864 35 H 0.147 0.853 36 H 0.154 0.846 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.761 -19.640 -0.383 22.399 hybrid contribution -0.288 0.022 1.184 1.219 sum 10.473 -19.619 0.801 22.254 Atomic orbital electron populations 1.23096 0.78470 1.03746 1.01838 1.86134 1.21085 1.25598 1.89287 1.18024 0.88887 0.85097 1.02996 1.21050 1.00503 0.89811 1.03202 1.19985 0.93482 0.94353 1.03021 1.18068 0.84790 0.82166 0.84440 1.90700 1.31462 1.80424 1.39336 1.43489 1.19559 1.18103 1.36273 1.19091 1.27193 1.02719 0.96138 0.86901 1.25394 0.95641 0.95092 0.98215 1.69703 1.41334 1.10431 1.26954 0.87172 0.78238 0.82374 0.83561 1.19462 1.20382 1.17757 1.19688 0.81059 0.99973 0.94666 1.29798 0.93932 0.93400 0.93948 1.81084 1.12416 1.09100 1.08689 1.21266 0.92728 0.98466 0.99830 1.20936 1.00240 0.90742 1.07464 1.18279 0.88059 0.85842 1.01476 1.86086 1.18312 1.28278 1.88757 1.22942 0.78753 0.98419 1.01477 1.21103 0.95253 0.94841 1.00010 1.21821 1.02584 0.99818 0.96227 1.21788 0.94056 1.02386 1.02142 0.88338 0.92377 0.92463 0.83795 0.91094 0.87750 0.86450 0.85341 0.84588 0.91976 0.91960 0.90051 0.91623 0.92761 0.92647 0.92314 0.91794 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.30 10.28 -34.38 -0.35 -4.65 16 3 C 0.10 1.44 6.69 -39.18 -0.26 1.18 16 4 C -0.13 -2.05 8.69 -39.04 -0.34 -2.39 16 5 C -0.10 -1.90 4.98 -104.97 -0.52 -2.42 16 6 C 0.52 11.62 7.19 -12.49 -0.09 11.53 16 7 O -0.54 -14.04 16.87 5.25 0.09 -13.95 16 8 N -0.45 -10.34 2.14 -119.14 -0.25 -10.60 16 9 C -0.32 -8.65 9.35 -15.00 -0.14 -8.79 16 10 H 0.11 3.42 7.88 -52.49 -0.41 3.00 16 11 C 0.06 1.67 5.36 -17.45 -0.09 1.57 16 12 N -0.85 -23.27 13.96 55.50 0.77 -22.50 16 13 Si 0.86 18.23 24.90 -169.99 -4.23 14.00 16 14 H -0.27 -5.19 6.72 56.52 0.38 -4.81 16 15 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.25 -5.11 7.11 56.52 0.40 -4.71 16 17 C 0.17 3.26 4.37 -6.83 -0.03 3.23 16 18 C 0.21 4.02 13.07 -20.76 -0.27 3.75 16 19 N -0.43 -8.80 18.54 42.16 0.78 -8.02 16 20 C -0.10 -1.65 7.49 -39.18 -0.29 -1.94 16 21 C -0.18 -2.37 9.01 -39.52 -0.36 -2.72 16 22 C 0.11 1.56 6.71 -38.91 -0.26 1.30 16 23 O -0.30 -3.90 9.44 -33.78 -0.32 -4.22 16 24 C 0.06 0.57 4.12 37.16 0.15 0.72 16 25 C -0.09 -0.74 3.16 -90.62 -0.29 -1.03 16 26 C -0.15 -1.18 9.09 37.16 0.34 -0.84 16 27 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.59 7.65 -51.93 -0.40 0.19 16 30 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 31 H 0.14 2.24 6.28 -52.49 -0.33 1.91 16 32 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.11 1.99 2.98 -51.93 -0.15 1.84 16 34 H 0.12 1.82 5.41 -51.93 -0.28 1.54 16 35 H 0.13 2.10 4.59 -52.49 -0.24 1.86 16 36 H 0.14 1.47 6.27 -52.49 -0.33 1.14 16 37 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 38 H 0.06 0.53 7.65 -51.93 -0.40 0.14 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 41 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -31.57 372.50 -4.88 -36.45 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.86 Total: 4.04 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -1.12 Total: 3.83 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 1.30 Total: -41.12 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.58 Total: -22.82 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -4.23 Total: 14.00 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.57 -4.88 -36.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195452842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.807 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds