Wall clock time and date at job start Tue Mar 31 2020 17:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00091 * 2 1 4 4 C 1.38130 * 119.99997 * 359.71741 * 3 2 1 5 5 C 1.39791 * 119.84321 * 179.77180 * 4 3 2 6 6 C 1.47496 * 120.07554 * 180.27829 * 5 4 3 7 7 O 1.21626 * 120.00092 * 312.67509 * 6 5 4 8 8 N 1.34779 * 119.99988 * 132.67960 * 6 5 4 9 9 C 1.36903 * 119.99719 * 185.35799 * 8 6 5 10 10 H 1.08001 * 120.00390 * 321.56185 * 9 8 6 11 11 C 1.39021 * 119.99515 * 141.55895 * 9 8 6 12 12 N 1.31386 * 119.99553 * 160.21499 * 11 9 8 13 13 Si 1.86801 * 120.00513 * 340.21753 * 11 9 8 14 14 H 1.48502 * 109.47116 * 95.32904 * 13 11 9 15 15 H 1.48500 * 109.47350 * 215.33278 * 13 11 9 16 16 H 1.48498 * 109.46596 * 335.33236 * 13 11 9 17 17 C 1.46494 * 120.00031 * 5.35419 * 8 6 5 18 18 C 1.47201 * 109.46750 * 94.83306 * 17 8 6 19 19 N 7.68473 * 114.52185 * 4.70494 * 2 1 3 20 20 C 1.39774 * 119.85009 * 0.52989 * 5 4 3 21 21 C 1.37777 * 119.99421 * 359.73008 * 20 5 4 22 22 C 1.38853 * 120.15503 * 359.97438 * 21 20 5 23 23 O 1.35800 * 119.92182 * 180.02562 * 22 21 20 24 24 C 1.42905 * 117.00050 * 0.02897 * 23 22 21 25 25 C 1.53001 * 109.47298 * 179.97438 * 24 23 22 26 26 C 1.53002 * 109.46855 * 64.99766 * 25 24 23 27 27 C 1.52996 * 109.47296 * 184.99931 * 25 24 23 28 28 H 1.08999 * 109.47340 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46687 * 60.00380 * 1 2 3 30 30 H 1.08995 * 109.47515 * 300.00375 * 1 2 3 31 31 H 1.07994 * 120.07419 * 0.02718 * 4 3 2 32 32 H 0.97000 * 119.99729 * 179.97438 * 12 11 9 33 33 H 1.08997 * 109.47614 * 214.83219 * 17 8 6 34 34 H 1.08998 * 109.47228 * 334.83909 * 17 8 6 35 35 H 1.07998 * 120.00540 * 179.69763 * 20 5 4 36 36 H 1.07998 * 119.92153 * 179.97438 * 21 20 5 37 37 H 1.09004 * 109.46732 * 299.99586 * 24 23 22 38 38 H 1.09000 * 109.47213 * 59.99673 * 24 23 22 39 39 H 1.08997 * 109.46615 * 305.00020 * 25 24 23 40 40 H 1.09004 * 109.47164 * 299.99948 * 26 25 24 41 41 H 1.08994 * 109.47055 * 60.00213 * 26 25 24 42 42 H 1.09000 * 109.46439 * 180.02562 * 26 25 24 43 43 H 1.09000 * 109.47210 * 59.99605 * 27 25 24 44 44 H 1.08996 * 109.47170 * 179.97438 * 27 25 24 45 45 H 1.09001 * 109.46727 * 299.99992 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2942 2.3701 -0.0059 5 6 1.9322 3.6139 -0.0011 6 6 1.1339 4.8542 -0.0011 7 8 0.2070 4.9808 -0.7784 8 7 1.4316 5.8473 0.8601 9 6 0.6258 6.9514 0.9367 10 1 0.1905 7.3656 0.0392 11 6 0.3678 7.5394 2.1697 12 7 -0.0595 8.7804 2.2290 13 14 0.6286 6.5652 3.7421 14 1 1.9772 6.8606 4.2894 15 1 -0.4044 6.9470 4.7382 16 1 0.5206 5.1136 3.4485 17 6 2.6173 5.7451 1.7144 18 6 3.7468 6.4354 1.0704 19 7 4.6185 6.9680 0.5735 20 6 3.3284 3.6796 -0.0015 21 6 4.0725 2.5201 -0.0010 22 6 3.4387 1.2846 0.0004 23 8 4.1768 0.1447 0.0013 24 6 5.5982 0.2921 0.0015 25 6 6.2543 -1.0901 0.0032 26 6 5.9225 -1.8137 -1.3034 27 6 7.7711 -0.9345 0.1291 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 0.5139 0.8899 31 1 0.2156 2.3150 -0.0101 32 1 -0.2398 9.1906 3.0893 33 1 2.4110 6.2081 2.6793 34 1 2.8696 4.6950 1.8617 35 1 3.8239 4.6392 -0.0027 36 1 5.1512 2.5722 -0.0018 37 1 5.9067 0.8400 -0.8890 38 1 5.9064 0.8414 0.8911 39 1 5.8774 -1.6700 0.8456 40 1 4.8418 -1.9246 -1.3930 41 1 6.2993 -1.2338 -2.1457 42 1 6.3896 -2.7986 -1.3018 43 1 8.0075 -0.4188 1.0599 44 1 8.2385 -1.9191 0.1308 45 1 8.1479 -0.3545 -0.7134 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195452842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:50 Heat of formation + Delta-G solvation = -54.217750 kcal Electronic energy + Delta-G solvation = -28684.627284 eV Core-core repulsion = 24668.559881 eV Total energy + Delta-G solvation = -4016.067403 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.94800 -40.80327 -39.68138 -38.08431 -37.80300 -36.55311 -36.10170 -34.25278 -31.57587 -31.39497 -29.54579 -28.47703 -27.99824 -27.66224 -26.84345 -24.10722 -23.35186 -21.50212 -20.94519 -20.46351 -19.52998 -18.85146 -18.33055 -17.81135 -17.38873 -17.33309 -17.14988 -16.48207 -16.27840 -15.91526 -15.64382 -15.50421 -15.20169 -15.01515 -14.76621 -14.55416 -14.36945 -14.18108 -13.93227 -13.82481 -13.61493 -13.41653 -13.32519 -13.23243 -12.96223 -12.77717 -12.48652 -12.38249 -12.34365 -12.20458 -11.98925 -11.96740 -11.76041 -11.55754 -11.49132 -11.18058 -10.69000 -10.09303 -9.87809 -8.91860 -8.55108 -6.26571 -0.09774 0.19189 1.19133 1.32619 1.37030 1.45495 1.60525 1.74931 2.11308 2.15993 2.27537 2.47564 2.66212 2.74527 3.06859 3.56525 3.66656 3.85582 3.88931 3.92069 3.95244 4.07527 4.08862 4.15505 4.21336 4.40813 4.42311 4.48301 4.55385 4.59688 4.70621 4.75200 4.83436 4.86663 5.02163 5.03047 5.05840 5.24008 5.25722 5.37252 5.42131 5.44143 5.48671 5.96580 6.04763 6.31100 6.38574 6.51510 6.75544 7.06830 7.58275 8.60954 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.003544 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.314537 B = 7898.755762 C = 8904.142189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.316 6.316 3 C 0.093 3.907 4 C -0.127 4.127 5 C -0.127 4.127 6 C 0.517 3.483 7 O -0.590 6.590 8 N -0.461 5.461 9 C -0.345 4.345 10 H 0.051 0.949 11 C 0.018 3.982 12 N -0.901 5.901 13 Si 0.924 3.076 14 H -0.228 1.228 15 H -0.279 1.279 16 H -0.234 1.234 17 C 0.175 3.825 18 C 0.218 3.782 19 N -0.450 5.450 20 C -0.099 4.099 21 C -0.161 4.161 22 C 0.120 3.880 23 O -0.308 6.308 24 C 0.048 3.952 25 C -0.091 4.091 26 C -0.147 4.147 27 C -0.143 4.143 28 H 0.127 0.873 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.143 0.857 32 H 0.285 0.715 33 H 0.110 0.890 34 H 0.159 0.841 35 H 0.125 0.875 36 H 0.170 0.830 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.045 0.955 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.824 -23.473 2.578 26.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.230 6.230 3 C 0.047 3.953 4 C -0.147 4.147 5 C -0.131 4.131 6 C 0.308 3.692 7 O -0.473 6.473 8 N -0.182 5.182 9 C -0.473 4.473 10 H 0.069 0.931 11 C -0.186 4.186 12 N -0.536 5.536 13 Si 0.744 3.256 14 H -0.153 1.153 15 H -0.205 1.205 16 H -0.157 1.157 17 C 0.049 3.951 18 C -0.100 4.100 19 N -0.129 5.129 20 C -0.118 4.118 21 C -0.180 4.180 22 C 0.073 3.927 23 O -0.222 6.222 24 C -0.027 4.027 25 C -0.110 4.110 26 C -0.205 4.205 27 C -0.200 4.200 28 H 0.145 0.855 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.161 0.839 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.176 0.824 35 H 0.142 0.858 36 H 0.187 0.813 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.588 -22.819 1.545 26.603 hybrid contribution -1.140 0.881 0.424 1.502 sum 12.449 -21.938 1.968 25.300 Atomic orbital electron populations 1.23367 0.76741 1.05759 1.01996 1.86134 1.22887 1.24948 1.89035 1.18092 0.89499 0.85012 1.02652 1.21003 1.00692 0.89658 1.03332 1.19572 0.94065 0.92497 1.06921 1.18773 0.84341 0.83212 0.82835 1.90656 1.33868 1.81596 1.41151 1.43459 1.20516 1.17233 1.37037 1.18617 1.29380 1.04454 0.94814 0.93096 1.26227 0.94757 0.95646 1.01957 1.69825 1.42975 1.12424 1.28425 0.86175 0.80139 0.81385 0.77887 1.15260 1.20505 1.15672 1.19923 0.79089 1.02413 0.93631 1.29820 0.93722 0.92925 0.93566 1.81090 1.13248 1.09628 1.08964 1.21181 0.91570 0.99217 0.99848 1.21153 1.01640 0.89355 1.05844 1.18430 0.88040 0.86567 0.99627 1.86111 1.20210 1.27744 1.88129 1.23307 0.76801 0.99874 1.02687 1.21126 0.96353 0.93862 0.99640 1.21820 1.01357 1.00701 0.96574 1.21771 0.92468 1.03123 1.02650 0.85451 0.92549 0.92008 0.83936 0.90545 0.87240 0.82382 0.85776 0.81275 0.91065 0.90301 0.90382 0.93558 0.92532 0.91473 0.91656 0.90964 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.32 -8.20 10.28 -79.43 -0.82 -9.01 16 3 C 0.09 2.62 6.69 22.53 0.15 2.77 16 4 C -0.13 -4.02 8.69 22.62 0.20 -3.82 16 5 C -0.13 -4.51 4.98 -20.09 -0.10 -4.61 16 6 C 0.52 23.90 7.19 86.68 0.62 24.52 16 7 O -0.59 -32.50 16.87 -4.11 -0.07 -32.57 16 8 N -0.46 -21.42 2.14 -649.08 -1.39 -22.81 16 9 C -0.35 -19.38 9.35 84.09 0.79 -18.60 16 10 H 0.05 3.40 7.88 -2.91 -0.02 3.38 16 11 C 0.02 0.96 5.36 84.95 0.46 1.42 16 12 N -0.90 -51.31 13.96 21.68 0.30 -51.00 16 13 Si 0.92 36.43 24.90 68.60 1.71 38.14 16 14 H -0.23 -7.59 6.72 99.48 0.67 -6.92 16 15 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 16 H -0.23 -8.46 7.11 99.48 0.71 -7.76 16 17 C 0.18 6.28 4.37 84.58 0.37 6.65 16 18 C 0.22 8.14 13.07 89.44 1.17 9.31 16 19 N -0.45 -17.76 18.54 20.01 0.37 -17.39 16 20 C -0.10 -2.91 7.49 22.53 0.17 -2.75 16 21 C -0.16 -3.78 9.01 22.31 0.20 -3.58 16 22 C 0.12 3.05 6.71 22.70 0.15 3.20 16 23 O -0.31 -7.00 9.44 -77.29 -0.73 -7.73 16 24 C 0.05 0.73 4.12 71.98 0.30 1.03 16 25 C -0.09 -1.15 3.16 -10.79 -0.03 -1.19 16 26 C -0.15 -2.01 9.09 71.98 0.65 -1.35 16 27 C -0.14 -1.24 9.19 71.98 0.66 -0.58 16 28 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 1.09 7.65 -2.39 -0.02 1.07 16 30 H 0.06 1.12 7.67 -2.39 -0.02 1.11 16 31 H 0.14 4.43 6.28 -2.91 -0.02 4.41 16 32 H 0.28 14.73 8.31 -92.71 -0.77 13.96 16 33 H 0.11 3.84 2.98 -2.39 -0.01 3.84 16 34 H 0.16 4.37 5.41 -2.39 -0.01 4.36 16 35 H 0.12 3.80 4.59 -2.91 -0.01 3.78 16 36 H 0.17 2.82 6.27 -2.91 -0.02 2.80 16 37 H 0.07 0.99 7.65 -2.38 -0.02 0.97 16 38 H 0.08 0.98 7.65 -2.39 -0.02 0.96 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.05 0.81 7.82 -2.38 -0.02 0.79 16 41 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -73.81 372.50 7.23 -66.57 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.99 Total: 21.96 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 6.86 Total: 13.84 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -0.71 Total: -91.20 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -1.62 Total: -49.31 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 1.71 Total: 38.14 kcal Total: -73.81 7.23 -66.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195452842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.355 kcal (2) G-P(sol) polarization free energy of solvation -73.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds