Wall clock time and date at job start Tue Mar 31 2020 18:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47195 * 2 1 4 4 N 1.46498 * 109.46941 * 119.99421 * 2 1 3 5 5 C 1.34779 * 119.99556 * 85.00302 * 4 2 1 6 6 O 1.21277 * 120.00306 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99650 * 179.97438 * 5 4 2 8 8 N 1.46498 * 109.46552 * 180.02562 * 7 5 4 9 9 C 1.34785 * 119.99521 * 180.02562 * 8 7 5 10 10 O 1.21715 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.46255 * 119.99650 * 180.27579 * 9 8 7 12 12 C 1.35025 * 119.99918 * 172.93880 * 11 9 8 13 13 C 1.46960 * 119.99925 * 348.68186 * 12 11 9 14 14 C 1.40028 * 120.10009 * 316.40557 * 13 12 11 15 15 C 1.37594 * 119.89934 * 179.76739 * 14 13 12 16 16 C 1.39184 * 120.09927 * 0.50673 * 15 14 13 17 17 O 1.35570 * 119.89843 * 179.76454 * 16 15 14 18 18 C 1.34783 * 116.99886 * 174.33946 * 17 16 15 19 19 H 1.07998 * 119.99829 * 5.06153 * 18 17 16 20 20 C 1.38721 * 119.99912 * 185.05607 * 18 17 16 21 21 N 1.31504 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99732 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47291 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46914 * 120.00744 * 22 20 18 25 25 H 1.48506 * 109.46956 * 240.00440 * 22 20 18 26 26 C 1.39177 * 120.19984 * 359.74795 * 16 15 14 27 27 C 1.37596 * 120.10326 * 359.97438 * 26 16 15 28 28 H 1.08997 * 109.47064 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47572 * 300.00748 * 1 2 3 30 30 H 1.09009 * 109.47141 * 60.00301 * 1 2 3 31 31 H 1.08997 * 109.47656 * 239.99800 * 2 1 3 32 32 H 1.08993 * 109.47370 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47238 * 299.99930 * 3 2 1 34 34 H 1.08997 * 109.46982 * 59.99387 * 3 2 1 35 35 H 0.97002 * 120.00564 * 265.00016 * 4 2 1 36 36 H 1.08992 * 109.47146 * 60.00378 * 7 5 4 37 37 H 1.09003 * 109.47133 * 299.99630 * 7 5 4 38 38 H 0.96995 * 120.00513 * 0.02562 * 8 7 5 39 39 H 1.08005 * 120.00497 * 352.93596 * 11 9 8 40 40 H 1.08000 * 120.00300 * 168.68630 * 12 11 9 41 41 H 1.08007 * 120.05004 * 0.02562 * 14 13 12 42 42 H 1.07995 * 119.95777 * 180.23340 * 15 14 13 43 43 H 0.96998 * 119.99874 * 179.97438 * 21 20 18 44 44 H 1.07998 * 119.94407 * 179.97438 * 26 16 15 45 45 H 1.08004 * 120.04756 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 1.1962 5 6 2.1469 -2.0321 1.1945 6 8 1.8581 -2.6677 0.2028 7 6 2.6498 -2.7424 2.4249 8 7 2.6995 -4.1842 2.1702 9 6 3.1210 -5.0249 3.1357 10 8 3.4607 -4.5861 4.2190 11 6 3.1764 -6.4637 2.8795 12 6 3.7308 -7.2910 3.7913 13 6 4.4962 -6.7369 4.9168 14 6 5.4082 -5.6963 4.7012 15 6 6.1191 -5.1773 5.7587 16 6 5.9408 -5.6921 7.0395 17 8 6.6469 -5.1809 8.0777 18 6 6.3449 -5.6403 9.3083 19 1 5.6289 -6.4403 9.4254 20 6 6.9538 -5.0855 10.4245 21 7 7.8252 -4.1110 10.2820 22 14 6.5357 -5.7227 12.1300 23 1 5.5350 -6.8141 12.0191 24 1 7.7656 -6.2434 12.7791 25 1 5.9745 -4.6172 12.9476 26 6 5.0394 -6.7299 7.2576 27 6 4.3199 -7.2513 6.2070 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 2.2489 -0.1822 1.9895 36 1 1.9776 -2.5435 3.2594 37 1 3.6492 -2.3823 2.6693 38 1 2.4292 -4.5339 1.3068 39 1 2.7739 -6.8646 1.9609 40 1 3.6117 -8.3600 3.6936 41 1 5.5502 -5.2989 3.7070 42 1 6.8199 -4.3723 5.5941 43 1 8.2507 -3.7229 11.0625 44 1 4.9045 -7.1265 8.2530 45 1 3.6203 -8.0563 6.3774 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255010859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:50 Heat of formation + Delta-G solvation = -50.413836 kcal Electronic energy + Delta-G solvation = -27092.896216 eV Core-core repulsion = 23076.993763 eV Total energy + Delta-G solvation = -4015.902453 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.43651 -39.50579 -38.63717 -36.65633 -36.30290 -34.28050 -33.03657 -32.18147 -32.02848 -30.10709 -28.73037 -27.67631 -27.28643 -25.39579 -23.21081 -21.91234 -21.69024 -20.95042 -20.77764 -19.50479 -17.95853 -17.60523 -16.93463 -16.70561 -16.42091 -16.02367 -15.51761 -14.89057 -14.69459 -14.56168 -14.37022 -14.23184 -13.78977 -13.56222 -13.45261 -13.33487 -13.17467 -12.93412 -12.78875 -12.73768 -12.60180 -12.36322 -12.16413 -11.83360 -11.69119 -11.42733 -11.36613 -11.01422 -10.67483 -10.59397 -10.39893 -10.26337 -9.55994 -9.53266 -9.41630 -9.15543 -9.03659 -8.69000 -7.91459 -6.85262 -6.45456 -4.01034 1.25876 2.23002 2.43293 2.59065 2.71100 3.13901 3.15078 3.20278 3.45603 3.63318 3.97518 4.26203 4.47903 4.59737 4.70874 4.78856 5.06499 5.11718 5.12244 5.17441 5.22589 5.26551 5.30187 5.33028 5.36666 5.47506 5.64350 5.65136 5.75657 5.80786 5.86346 6.06986 6.26490 6.34331 6.37811 6.47853 6.61388 6.80177 7.04823 7.05848 7.13776 7.37625 7.46607 7.51415 7.66911 7.78671 7.93474 8.01644 8.51200 9.00520 9.72693 10.72542 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014353 B = 0.002222 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.296379 B =12597.145591 C =13994.450741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.136 3.864 3 C -0.162 4.162 4 N -0.724 5.724 5 C 0.513 3.487 6 O -0.539 6.539 7 C 0.102 3.898 8 N -0.726 5.726 9 C 0.542 3.458 10 O -0.513 6.513 11 C -0.264 4.264 12 C 0.028 3.972 13 C -0.189 4.189 14 C 0.012 3.988 15 C -0.203 4.203 16 C 0.171 3.829 17 O -0.174 6.174 18 C -0.389 4.389 19 H 0.094 0.906 20 C 0.038 3.962 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.251 4.251 27 C -0.041 4.041 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.404 0.596 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.407 0.593 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.576 5.321 -19.033 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.032 3.968 3 C -0.219 4.219 4 N -0.377 5.377 5 C 0.299 3.701 6 O -0.416 6.416 7 C -0.026 4.026 8 N -0.383 5.383 9 C 0.332 3.668 10 O -0.389 6.389 11 C -0.285 4.285 12 C 0.009 3.991 13 C -0.190 4.190 14 C -0.007 4.007 15 C -0.222 4.222 16 C 0.116 3.884 17 O -0.076 6.076 18 C -0.465 4.465 19 H 0.112 0.888 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.767 3.233 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.270 4.270 27 C -0.060 4.060 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.239 0.761 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.244 0.756 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.119 0.881 42 H 0.131 0.869 43 H 0.080 0.920 44 H 0.143 0.857 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.201 5.525 -18.791 23.076 hybrid contribution -0.429 -0.092 0.764 0.881 sum -12.630 5.433 -18.027 22.672 Atomic orbital electron populations 1.22193 0.95132 1.02735 1.02218 1.20969 0.94279 0.92933 0.88656 1.22088 1.01921 0.94835 1.03097 1.46052 1.67648 1.06812 1.17214 1.20696 0.77170 0.82637 0.89608 1.90684 1.50108 1.65801 1.34969 1.20971 1.03500 0.82820 0.95301 1.45718 1.69736 1.04973 1.17835 1.18499 0.77179 0.87267 0.83841 1.91000 1.46450 1.78107 1.23338 1.22546 1.11045 0.92433 1.02510 1.22340 0.87898 0.98219 0.90680 1.18304 1.04284 1.03416 0.93022 1.20447 0.92075 0.91367 0.96791 1.20000 1.06741 1.04817 0.90655 1.19529 0.89099 0.90944 0.88797 1.83905 1.51748 1.58177 1.13760 1.21444 1.26085 1.19043 0.79933 0.88834 1.25327 0.95952 0.95900 0.99449 1.70030 1.25389 1.23147 1.30916 0.85630 0.78570 0.78732 0.80410 1.19034 1.20140 1.20123 1.20956 1.03732 1.02565 0.99741 1.20745 0.96441 0.97050 0.91720 0.92032 0.92340 0.91561 0.89344 0.91781 0.90831 0.91869 0.76095 0.88487 0.88353 0.75609 0.85960 0.85953 0.88082 0.86856 0.92031 0.85652 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.48 37.15 0.35 -0.69 16 2 C 0.14 0.89 3.18 -67.93 -0.22 0.67 16 3 C -0.16 -0.70 9.38 37.16 0.35 -0.35 16 4 N -0.72 -5.10 5.08 -53.81 -0.27 -5.37 16 5 C 0.51 5.04 7.86 -10.98 -0.09 4.96 16 6 O -0.54 -6.86 15.33 5.56 0.09 -6.78 16 7 C 0.10 1.06 6.15 -5.19 -0.03 1.03 16 8 N -0.73 -8.77 5.52 -62.94 -0.35 -9.12 16 9 C 0.54 8.11 6.77 -13.04 -0.09 8.03 16 10 O -0.51 -9.76 12.17 5.18 0.06 -9.70 16 11 C -0.26 -3.45 9.90 -37.50 -0.37 -3.82 16 12 C 0.03 0.40 9.80 -37.19 -0.36 0.04 16 13 C -0.19 -3.50 4.54 -105.03 -0.48 -3.98 16 14 C 0.01 0.23 6.59 -39.15 -0.26 -0.02 16 15 C -0.20 -4.63 9.97 -39.47 -0.39 -5.02 16 16 C 0.17 4.34 6.66 -38.88 -0.26 4.08 16 17 O -0.17 -5.08 9.74 0.74 0.01 -5.08 16 18 C -0.39 -11.06 9.48 30.91 0.29 -10.77 16 19 H 0.09 2.47 5.18 -52.49 -0.27 2.20 16 20 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 21 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 22 Si 0.94 20.71 29.55 -169.99 -5.02 15.69 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 26 C -0.25 -5.72 9.14 -39.47 -0.36 -6.08 16 27 C -0.04 -0.80 9.78 -39.15 -0.38 -1.18 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.34 8.14 -51.92 -0.42 -0.09 16 31 H 0.09 0.72 7.58 -51.93 -0.39 0.32 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.40 1.96 8.60 -40.82 -0.35 1.61 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.41 4.49 7.42 -40.82 -0.30 4.19 16 39 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 40 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.10 1.84 7.02 -52.48 -0.37 1.47 16 42 H 0.11 2.51 8.06 -52.49 -0.42 2.09 16 43 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.13 2.83 5.62 -52.49 -0.29 2.54 16 45 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 383.70 15.07 5.78 5.78 Total: -1.00 -35.21 383.70 -7.53 -42.74 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.19 Total: 8.66 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -2.39 Total: -12.16 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.14 Total: -39.17 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: 0.16 Total: -21.55 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.21 -7.53 -42.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255010859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.674 kcal (2) G-P(sol) polarization free energy of solvation -35.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds