Wall clock time and date at job start Tue Mar 31 2020 18:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47195 * 2 1 4 4 N 1.46498 * 109.46941 * 119.99421 * 2 1 3 5 5 C 1.34779 * 119.99556 * 85.00302 * 4 2 1 6 6 O 1.21277 * 120.00306 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99650 * 179.97438 * 5 4 2 8 8 N 1.46498 * 109.46552 * 180.02562 * 7 5 4 9 9 C 1.34785 * 119.99521 * 180.02562 * 8 7 5 10 10 O 1.21715 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.46255 * 119.99650 * 180.27579 * 9 8 7 12 12 C 1.35025 * 119.99918 * 172.93880 * 11 9 8 13 13 C 1.46960 * 119.99925 * 348.68186 * 12 11 9 14 14 C 1.40028 * 120.10009 * 316.40557 * 13 12 11 15 15 C 1.37594 * 119.89934 * 179.76739 * 14 13 12 16 16 C 1.39184 * 120.09927 * 0.50673 * 15 14 13 17 17 O 1.35570 * 119.89843 * 179.76454 * 16 15 14 18 18 C 1.34783 * 116.99886 * 174.33946 * 17 16 15 19 19 H 1.07998 * 119.99829 * 5.06153 * 18 17 16 20 20 C 1.38721 * 119.99912 * 185.05607 * 18 17 16 21 21 N 1.31504 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99732 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47291 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46914 * 120.00744 * 22 20 18 25 25 H 1.48506 * 109.46956 * 240.00440 * 22 20 18 26 26 C 1.39177 * 120.19984 * 359.74795 * 16 15 14 27 27 C 1.37596 * 120.10326 * 359.97438 * 26 16 15 28 28 H 1.08997 * 109.47064 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47572 * 300.00748 * 1 2 3 30 30 H 1.09009 * 109.47141 * 60.00301 * 1 2 3 31 31 H 1.08997 * 109.47656 * 239.99800 * 2 1 3 32 32 H 1.08993 * 109.47370 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47238 * 299.99930 * 3 2 1 34 34 H 1.08997 * 109.46982 * 59.99387 * 3 2 1 35 35 H 0.97002 * 120.00564 * 265.00016 * 4 2 1 36 36 H 1.08992 * 109.47146 * 60.00378 * 7 5 4 37 37 H 1.09003 * 109.47133 * 299.99630 * 7 5 4 38 38 H 0.96995 * 120.00513 * 0.02562 * 8 7 5 39 39 H 1.08005 * 120.00497 * 352.93596 * 11 9 8 40 40 H 1.08000 * 120.00300 * 168.68630 * 12 11 9 41 41 H 1.08007 * 120.05004 * 0.02562 * 14 13 12 42 42 H 1.07995 * 119.95777 * 180.23340 * 15 14 13 43 43 H 0.96998 * 119.99874 * 179.97438 * 21 20 18 44 44 H 1.07998 * 119.94407 * 179.97438 * 26 16 15 45 45 H 1.08004 * 120.04756 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 1.1962 5 6 2.1469 -2.0321 1.1945 6 8 1.8581 -2.6677 0.2028 7 6 2.6498 -2.7424 2.4249 8 7 2.6995 -4.1842 2.1702 9 6 3.1210 -5.0249 3.1357 10 8 3.4607 -4.5861 4.2190 11 6 3.1764 -6.4637 2.8795 12 6 3.7308 -7.2910 3.7913 13 6 4.4962 -6.7369 4.9168 14 6 5.4082 -5.6963 4.7012 15 6 6.1191 -5.1773 5.7587 16 6 5.9408 -5.6921 7.0395 17 8 6.6469 -5.1809 8.0777 18 6 6.3449 -5.6403 9.3083 19 1 5.6289 -6.4403 9.4254 20 6 6.9538 -5.0855 10.4245 21 7 7.8252 -4.1110 10.2820 22 14 6.5357 -5.7227 12.1300 23 1 5.5350 -6.8141 12.0191 24 1 7.7656 -6.2434 12.7791 25 1 5.9745 -4.6172 12.9476 26 6 5.0394 -6.7299 7.2576 27 6 4.3199 -7.2513 6.2070 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 2.2489 -0.1822 1.9895 36 1 1.9776 -2.5435 3.2594 37 1 3.6492 -2.3823 2.6693 38 1 2.4292 -4.5339 1.3068 39 1 2.7739 -6.8646 1.9609 40 1 3.6117 -8.3600 3.6936 41 1 5.5502 -5.2989 3.7070 42 1 6.8199 -4.3723 5.5941 43 1 8.2507 -3.7229 11.0625 44 1 4.9045 -7.1265 8.2530 45 1 3.6203 -8.0563 6.3774 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255010859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:48 Heat of formation + Delta-G solvation = -76.224975 kcal Electronic energy + Delta-G solvation = -27094.015471 eV Core-core repulsion = 23076.993763 eV Total energy + Delta-G solvation = -4017.021708 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.39027 -40.83639 -40.19363 -38.19532 -37.12626 -35.40650 -34.58156 -33.91797 -32.76105 -31.80250 -30.05063 -28.50847 -28.11723 -27.34996 -24.47046 -23.48739 -22.75616 -22.10761 -21.59148 -20.72389 -19.79220 -18.99506 -18.36952 -17.64481 -17.46532 -16.92803 -16.57144 -16.32552 -16.21739 -15.86065 -15.67162 -15.46183 -15.20203 -14.99697 -14.63746 -14.46124 -14.31097 -14.21472 -13.97001 -13.70667 -13.54819 -13.48092 -13.22607 -13.07330 -13.01490 -12.64598 -12.33125 -12.32605 -12.22108 -12.08461 -11.94227 -11.22066 -11.11265 -10.98352 -10.72323 -10.40286 -10.25820 -10.08858 -9.56559 -8.54733 -8.47383 -6.14302 -0.01104 0.73555 1.12770 1.34706 1.42670 1.45529 1.53790 1.81959 2.17885 2.44969 2.53617 2.88278 3.22511 3.53970 3.57634 3.93347 4.00605 4.07771 4.11046 4.17071 4.19187 4.30167 4.31613 4.39428 4.57197 4.61824 4.71826 4.73386 4.78894 4.91226 4.98190 5.06872 5.11108 5.24753 5.26355 5.27748 5.30258 5.37229 5.44925 5.48000 5.69418 5.74351 5.85786 6.04054 6.26384 6.39308 6.62018 6.96767 7.06251 7.36522 7.78993 8.75873 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014353 B = 0.002222 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.296379 B =12597.145591 C =13994.450741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.133 3.867 3 C -0.155 4.155 4 N -0.712 5.712 5 C 0.517 3.483 6 O -0.569 6.569 7 C 0.100 3.900 8 N -0.713 5.713 9 C 0.532 3.468 10 O -0.561 6.561 11 C -0.234 4.234 12 C 0.011 3.989 13 C -0.162 4.162 14 C 0.014 3.986 15 C -0.219 4.219 16 C 0.128 3.872 17 O -0.230 6.230 18 C -0.413 4.413 19 H 0.103 0.897 20 C -0.025 4.025 21 N -0.920 5.920 22 Si 1.021 2.979 23 H -0.251 1.251 24 H -0.266 1.266 25 H -0.268 1.268 26 C -0.259 4.259 27 C -0.046 4.046 28 H 0.038 0.962 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.416 0.584 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.415 0.585 39 H 0.169 0.831 40 H 0.170 0.830 41 H 0.120 0.880 42 H 0.103 0.897 43 H 0.273 0.727 44 H 0.120 0.880 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.343 3.978 -21.247 26.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.029 3.971 3 C -0.213 4.213 4 N -0.364 5.364 5 C 0.303 3.697 6 O -0.449 6.449 7 C -0.028 4.028 8 N -0.368 5.368 9 C 0.323 3.677 10 O -0.441 6.441 11 C -0.255 4.255 12 C -0.009 4.009 13 C -0.163 4.163 14 C -0.004 4.004 15 C -0.238 4.238 16 C 0.077 3.923 17 O -0.137 6.137 18 C -0.489 4.489 19 H 0.120 0.880 20 C -0.222 4.222 21 N -0.559 5.559 22 Si 0.840 3.160 23 H -0.174 1.174 24 H -0.191 1.191 25 H -0.193 1.193 26 C -0.278 4.278 27 C -0.064 4.064 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.253 0.747 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.254 0.746 39 H 0.186 0.814 40 H 0.187 0.813 41 H 0.138 0.862 42 H 0.121 0.879 43 H 0.082 0.918 44 H 0.137 0.863 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.013 4.196 -21.092 26.227 hybrid contribution 0.175 0.350 0.925 1.005 sum -14.839 4.547 -20.167 25.447 Atomic orbital electron populations 1.22156 0.94773 1.01545 1.03378 1.21073 0.94536 0.93954 0.87558 1.22048 1.01787 0.93222 1.04213 1.46026 1.66389 1.06029 1.18002 1.20547 0.76952 0.83362 0.88824 1.90672 1.51774 1.66584 1.35835 1.21053 1.03787 0.82118 0.95817 1.45647 1.68067 1.05550 1.17546 1.19020 0.76663 0.88550 0.83480 1.91008 1.48692 1.79073 1.25327 1.22986 1.08593 0.90835 1.03063 1.22579 0.88548 1.00664 0.89067 1.18866 1.02192 1.00858 0.94351 1.20678 0.91610 0.91580 0.96575 1.20178 1.07437 1.05231 0.90999 1.20015 0.90780 0.92635 0.88889 1.83874 1.54458 1.60656 1.14674 1.21917 1.26816 1.19722 0.80489 0.88018 1.26659 0.95576 0.96022 1.03947 1.70177 1.27722 1.25598 1.32354 0.84495 0.78857 0.78515 0.74094 1.17414 1.19137 1.19320 1.21092 1.03831 1.02162 1.00747 1.21171 0.96364 0.97836 0.91052 0.94301 0.91513 0.90128 0.91023 0.91933 0.89641 0.90841 0.74702 0.88119 0.88224 0.74627 0.81399 0.81291 0.86245 0.87883 0.91783 0.86264 0.83475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.48 71.98 0.68 -1.11 16 2 C 0.13 1.54 3.18 44.99 0.14 1.68 16 3 C -0.16 -1.03 9.38 71.98 0.68 -0.35 16 4 N -0.71 -9.05 5.08 -442.53 -2.25 -11.29 16 5 C 0.52 9.51 7.86 87.66 0.69 10.20 16 6 O -0.57 -13.80 15.33 -3.02 -0.05 -13.85 16 7 C 0.10 1.94 6.15 85.64 0.53 2.47 16 8 N -0.71 -15.40 5.52 -471.23 -2.60 -18.00 16 9 C 0.53 14.33 6.77 86.32 0.58 14.91 16 10 O -0.56 -20.55 12.17 -4.40 -0.05 -20.60 16 11 C -0.23 -4.88 9.90 23.62 0.23 -4.64 16 12 C 0.01 0.25 9.80 23.82 0.23 0.48 16 13 C -0.16 -5.56 4.54 -20.13 -0.09 -5.66 16 14 C 0.01 0.54 6.59 22.55 0.15 0.69 16 15 C -0.22 -10.49 9.97 22.35 0.22 -10.27 16 16 C 0.13 6.87 6.66 22.72 0.15 7.02 16 17 O -0.23 -14.60 9.74 -20.28 -0.20 -14.80 16 18 C -0.41 -25.01 9.48 67.94 0.64 -24.36 16 19 H 0.10 5.67 5.18 -2.91 -0.02 5.65 16 20 C -0.02 -1.44 5.49 84.86 0.47 -0.98 16 21 N -0.92 -57.90 13.67 21.62 0.30 -57.60 16 22 Si 1.02 43.93 29.55 68.60 2.03 45.95 16 23 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 C -0.26 -12.09 9.14 22.34 0.20 -11.89 16 27 C -0.05 -1.71 9.78 22.55 0.22 -1.49 16 28 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.07 1.11 7.58 -2.39 -0.02 1.09 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.42 3.36 8.60 -92.71 -0.80 2.57 16 36 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.42 7.86 7.42 -92.71 -0.69 7.17 16 39 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 40 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 41 H 0.12 4.16 7.02 -2.91 -0.02 4.14 16 42 H 0.10 4.96 8.06 -2.91 -0.02 4.93 16 43 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.12 5.58 5.62 -2.91 -0.02 5.57 16 45 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -84.22 383.70 2.46 -81.76 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: -0.45 Total: 31.72 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: 5.74 Total: -23.30 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -4.55 Total: -86.89 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -0.30 Total: -49.24 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -84.22 2.46 -81.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255010859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.540 kcal (2) G-P(sol) polarization free energy of solvation -84.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds