Wall clock time and date at job start Tue Mar 31 2020 16:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47061 * 2 1 4 4 C 1.53003 * 109.46863 * 119.99814 * 2 1 3 5 5 H 1.09004 * 109.47089 * 58.78615 * 4 2 1 6 6 N 1.46507 * 109.46770 * 178.77834 * 4 2 1 7 7 C 1.34774 * 120.00036 * 204.99719 * 6 4 2 8 8 O 1.21721 * 120.00013 * 0.02562 * 7 6 4 9 9 C 1.46252 * 119.99982 * 180.02562 * 7 6 4 10 10 C 1.35020 * 119.99989 * 172.61295 * 9 7 6 11 11 C 1.46969 * 119.99987 * 348.13703 * 10 9 7 12 12 C 1.40018 * 120.09752 * 314.19944 * 11 10 9 13 13 C 1.37604 * 119.89484 * 179.69334 * 12 11 10 14 14 C 1.39177 * 120.09582 * 0.60060 * 13 12 11 15 15 O 1.35580 * 119.89499 * 179.69467 * 14 13 12 16 16 C 1.34782 * 116.99909 * 185.32398 * 15 14 13 17 17 H 1.08002 * 119.99979 * 4.83746 * 16 15 14 18 18 C 1.38714 * 120.00049 * 184.82616 * 16 15 14 19 19 N 1.31505 * 120.00021 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00187 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46947 * 90.00384 * 20 18 16 22 22 H 1.48495 * 109.47415 * 210.00363 * 20 18 16 23 23 H 1.48501 * 109.47170 * 330.00831 * 20 18 16 24 24 C 1.39176 * 120.20858 * 359.67652 * 14 13 12 25 25 C 1.37600 * 120.09919 * 0.02562 * 24 14 13 26 26 C 1.50696 * 109.47238 * 298.77806 * 4 2 1 27 27 N 1.34778 * 119.99914 * 78.93604 * 26 4 2 28 28 O 1.21277 * 120.00260 * 258.92930 * 26 4 2 29 29 H 1.09000 * 109.47160 * 296.58394 * 1 2 3 30 30 H 1.09002 * 109.47533 * 56.58063 * 1 2 3 31 31 H 1.08999 * 109.47749 * 176.58646 * 1 2 3 32 32 H 1.09003 * 109.47055 * 239.99635 * 2 1 3 33 33 H 1.08998 * 109.46915 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47228 * 299.99730 * 3 2 1 35 35 H 1.08990 * 109.47380 * 60.00221 * 3 2 1 36 36 H 0.96996 * 119.99538 * 25.00831 * 6 4 2 37 37 H 1.08002 * 120.00142 * 352.60462 * 9 7 6 38 38 H 1.08000 * 120.00284 * 168.14441 * 10 9 7 39 39 H 1.07995 * 120.05809 * 359.97438 * 12 11 10 40 40 H 1.07997 * 119.95047 * 180.26990 * 13 12 11 41 41 H 0.96998 * 120.00167 * 179.97438 * 19 18 16 42 42 H 1.07997 * 119.95149 * 179.97438 * 24 14 13 43 43 H 1.07994 * 120.05467 * 180.02562 * 25 24 14 44 44 H 0.97003 * 119.99811 * 5.07924 * 27 26 4 45 45 H 0.96997 * 119.99978 * 185.09329 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6589 -1.7424 1.2603 6 7 3.5047 -0.7468 1.2347 7 6 4.1686 -1.7097 1.9043 8 8 3.5513 -2.5584 2.5208 9 6 5.6308 -1.7349 1.8901 10 6 6.2987 -2.6046 2.6779 11 6 5.5849 -3.3387 3.7321 12 6 4.6957 -2.6648 4.5781 13 6 4.0248 -3.3574 5.5598 14 6 4.2384 -4.7233 5.7203 15 8 3.5798 -5.4006 6.6928 16 6 3.9113 -6.6951 6.8689 17 1 4.7242 -7.1261 6.3033 18 6 3.2085 -7.4737 7.7766 19 7 2.2185 -6.9490 8.4651 20 14 3.6674 -9.2681 8.0201 21 1 4.6869 -9.3768 9.0944 22 1 2.4588 -10.0404 8.4046 23 1 4.2216 -9.8134 6.7549 24 6 5.1256 -5.3962 4.8855 25 6 5.7964 -4.7130 3.8972 26 6 1.5625 0.0065 2.4795 27 7 0.2981 -0.1628 2.9144 28 8 2.3160 0.7443 3.0784 29 1 -0.3633 0.4599 0.9190 30 1 -0.3634 0.5660 -0.8577 31 1 -0.3634 -1.0258 -0.0612 32 1 1.8933 -0.5139 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.9966 -0.0706 0.7431 37 1 6.1764 -1.0579 1.2494 38 1 7.3576 -2.7607 2.5334 39 1 4.5332 -1.6040 4.4576 40 1 3.3354 -2.8394 6.2100 41 1 1.7269 -7.4936 9.0995 42 1 5.2886 -6.4561 5.0140 43 1 6.4844 -5.2359 3.2495 44 1 -0.2818 -0.8080 2.4803 45 1 -0.0321 0.3606 3.6613 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255026823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:47 Heat of formation + Delta-G solvation = -52.989595 kcal Electronic energy + Delta-G solvation = -28450.646442 eV Core-core repulsion = 24434.632296 eV Total energy + Delta-G solvation = -4016.014146 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.61290 -39.21657 -38.49395 -36.66581 -36.10350 -33.91023 -33.02740 -32.96844 -32.08314 -30.07331 -28.44515 -27.60510 -27.01995 -25.36213 -23.13037 -22.12220 -21.72785 -20.93750 -19.93473 -19.27362 -17.91033 -17.59873 -17.27020 -16.78619 -16.56177 -16.04808 -15.32907 -14.85427 -14.55297 -14.42508 -14.35499 -14.00229 -13.80728 -13.61846 -13.51540 -13.32583 -13.18921 -12.89526 -12.79061 -12.52757 -12.46876 -12.15336 -11.66860 -11.53411 -11.39662 -11.32275 -11.23186 -10.98605 -10.65991 -10.57173 -10.38053 -10.21160 -9.66539 -9.51071 -9.40939 -9.12248 -8.95909 -8.67687 -7.91791 -6.83888 -6.43381 -3.99067 1.29862 2.45406 2.56721 2.70915 3.10308 3.15027 3.16262 3.20224 3.48053 3.78442 3.99028 4.33045 4.49441 4.59719 4.72721 4.86175 5.03358 5.13359 5.16052 5.24910 5.26246 5.32669 5.37959 5.45965 5.50159 5.62313 5.65638 5.77537 5.82745 5.91218 5.91386 6.29156 6.37513 6.37825 6.48654 6.63540 6.71517 6.84262 7.07616 7.15432 7.23322 7.40390 7.48878 7.53682 7.64944 7.96500 8.03401 8.20126 8.53408 9.02418 9.75376 10.74742 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.002864 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.164666 B = 9774.020028 C =10780.557857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.096 4.096 3 C -0.153 4.153 4 C 0.132 3.868 5 H 0.110 0.890 6 N -0.715 5.715 7 C 0.544 3.456 8 O -0.511 6.511 9 C -0.261 4.261 10 C 0.027 3.973 11 C -0.184 4.184 12 C 0.005 3.995 13 C -0.199 4.199 14 C 0.170 3.830 15 O -0.174 6.174 16 C -0.389 4.389 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.248 4.248 25 C -0.043 4.043 26 C 0.514 3.486 27 N -0.854 5.854 28 O -0.534 6.534 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.400 0.600 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.270 0.730 42 H 0.126 0.874 43 H 0.106 0.894 44 H 0.401 0.599 45 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.683 13.767 -18.924 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.115 4.115 3 C -0.210 4.210 4 C 0.023 3.977 5 H 0.128 0.872 6 N -0.368 5.368 7 C 0.334 3.666 8 O -0.387 6.387 9 C -0.282 4.282 10 C 0.007 3.993 11 C -0.185 4.185 12 C -0.014 4.014 13 C -0.219 4.219 14 C 0.115 3.885 15 O -0.077 6.077 16 C -0.466 4.466 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.496 5.496 20 Si 0.766 3.234 21 H -0.198 1.198 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.267 4.267 25 C -0.062 4.062 26 C 0.297 3.703 27 N -0.419 5.419 28 O -0.409 6.409 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.235 0.765 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.120 0.880 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.143 0.857 43 H 0.124 0.876 44 H 0.231 0.769 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -0.844 13.544 -17.859 22.430 hybrid contribution -0.047 -0.638 -0.099 0.647 sum -0.891 12.906 -17.957 22.132 Atomic orbital electron populations 1.22070 0.93890 1.02746 1.03275 1.21305 0.96873 0.96894 0.96437 1.21910 1.01358 0.95233 1.02497 1.20833 0.83017 1.01171 0.92699 0.87223 1.45678 1.04778 1.31594 1.54798 1.18537 0.88873 0.80863 0.78297 1.90990 1.69437 1.37638 1.40623 1.22561 0.92672 1.05989 1.06988 1.22339 0.98099 0.89486 0.89357 1.18295 1.05494 0.94016 1.00655 1.20488 0.91379 0.97704 0.91825 1.19994 1.06291 0.91913 1.03666 1.19525 0.90159 0.91478 0.87310 1.83924 1.54562 1.24346 1.44822 1.21381 1.17165 0.83802 1.24207 0.88951 1.25315 0.95412 1.00137 0.95718 1.70023 1.19288 1.36802 1.23443 0.85706 0.78218 0.80385 0.79091 1.19848 1.20263 1.19154 1.20953 1.04418 1.00713 1.00625 1.20727 0.97005 0.92787 0.95648 1.21057 0.81701 0.81530 0.85994 1.44027 1.14471 1.45176 1.38225 1.90727 1.54050 1.38413 1.57711 0.91409 0.91589 0.91807 0.89189 0.92301 0.91964 0.92070 0.76465 0.86015 0.85961 0.87986 0.86987 0.92003 0.85653 0.87601 0.76943 0.76915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 8.46 37.16 0.31 -0.59 16 2 C -0.10 -0.68 2.89 -90.62 -0.26 -0.94 16 3 C -0.15 -1.09 8.77 37.16 0.33 -0.76 16 4 C 0.13 1.44 2.20 -69.08 -0.15 1.28 16 5 H 0.11 1.29 7.58 -51.93 -0.39 0.89 16 6 N -0.72 -8.49 4.56 -56.37 -0.26 -8.75 16 7 C 0.54 8.43 6.79 -13.04 -0.09 8.35 16 8 O -0.51 -10.12 12.11 5.17 0.06 -10.06 16 9 C -0.26 -3.50 9.90 -37.51 -0.37 -3.87 16 10 C 0.03 0.39 9.79 -37.19 -0.36 0.03 16 11 C -0.18 -3.53 4.42 -105.02 -0.46 -4.00 16 12 C 0.00 0.10 6.73 -39.15 -0.26 -0.17 16 13 C -0.20 -4.79 9.97 -39.46 -0.39 -5.18 16 14 C 0.17 4.43 6.66 -38.88 -0.26 4.17 16 15 O -0.17 -5.20 9.74 0.71 0.01 -5.20 16 16 C -0.39 -11.22 9.45 30.91 0.29 -10.93 16 17 H 0.09 2.47 5.25 -52.49 -0.28 2.19 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -25.77 13.67 55.48 0.76 -25.01 16 20 Si 0.94 20.90 29.55 -169.99 -5.02 15.87 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 24 C -0.25 -5.78 9.11 -39.47 -0.36 -6.14 16 25 C -0.04 -0.86 9.78 -39.15 -0.38 -1.25 16 26 C 0.51 6.58 5.64 -10.99 -0.06 6.52 16 27 N -0.85 -8.07 7.39 31.22 0.23 -7.84 16 28 O -0.53 -8.96 17.14 5.56 0.10 -8.86 16 29 H 0.07 0.39 5.65 -51.93 -0.29 0.10 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.55 7.01 -51.93 -0.36 0.19 16 36 H 0.40 3.71 6.92 -40.82 -0.28 3.42 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.10 2.11 7.28 -52.49 -0.38 1.73 16 40 H 0.11 2.66 8.06 -52.49 -0.42 2.24 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.13 2.88 5.68 -52.49 -0.30 2.59 16 43 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 44 H 0.40 2.77 7.81 -40.82 -0.32 2.45 16 45 H 0.40 3.47 8.93 -40.82 -0.36 3.10 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -37.28 373.31 -6.92 -44.20 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -5.83 Total: 12.50 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -2.59 Total: -12.49 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.73 Total: -41.59 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: 0.16 Total: -24.12 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.28 -6.92 -44.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255026823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.787 kcal (2) G-P(sol) polarization free energy of solvation -37.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds