Wall clock time and date at job start Tue Mar 31 2020 16:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47061 * 2 1 4 4 C 1.53003 * 109.46863 * 119.99814 * 2 1 3 5 5 H 1.09004 * 109.47089 * 58.78615 * 4 2 1 6 6 N 1.46507 * 109.46770 * 178.77834 * 4 2 1 7 7 C 1.34774 * 120.00036 * 204.99719 * 6 4 2 8 8 O 1.21721 * 120.00013 * 0.02562 * 7 6 4 9 9 C 1.46252 * 119.99982 * 180.02562 * 7 6 4 10 10 C 1.35020 * 119.99989 * 172.61295 * 9 7 6 11 11 C 1.46969 * 119.99987 * 348.13703 * 10 9 7 12 12 C 1.40018 * 120.09752 * 314.19944 * 11 10 9 13 13 C 1.37604 * 119.89484 * 179.69334 * 12 11 10 14 14 C 1.39177 * 120.09582 * 0.60060 * 13 12 11 15 15 O 1.35580 * 119.89499 * 179.69467 * 14 13 12 16 16 C 1.34782 * 116.99909 * 185.32398 * 15 14 13 17 17 H 1.08002 * 119.99979 * 4.83746 * 16 15 14 18 18 C 1.38714 * 120.00049 * 184.82616 * 16 15 14 19 19 N 1.31505 * 120.00021 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00187 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46947 * 90.00384 * 20 18 16 22 22 H 1.48495 * 109.47415 * 210.00363 * 20 18 16 23 23 H 1.48501 * 109.47170 * 330.00831 * 20 18 16 24 24 C 1.39176 * 120.20858 * 359.67652 * 14 13 12 25 25 C 1.37600 * 120.09919 * 0.02562 * 24 14 13 26 26 C 1.50696 * 109.47238 * 298.77806 * 4 2 1 27 27 N 1.34778 * 119.99914 * 78.93604 * 26 4 2 28 28 O 1.21277 * 120.00260 * 258.92930 * 26 4 2 29 29 H 1.09000 * 109.47160 * 296.58394 * 1 2 3 30 30 H 1.09002 * 109.47533 * 56.58063 * 1 2 3 31 31 H 1.08999 * 109.47749 * 176.58646 * 1 2 3 32 32 H 1.09003 * 109.47055 * 239.99635 * 2 1 3 33 33 H 1.08998 * 109.46915 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47228 * 299.99730 * 3 2 1 35 35 H 1.08990 * 109.47380 * 60.00221 * 3 2 1 36 36 H 0.96996 * 119.99538 * 25.00831 * 6 4 2 37 37 H 1.08002 * 120.00142 * 352.60462 * 9 7 6 38 38 H 1.08000 * 120.00284 * 168.14441 * 10 9 7 39 39 H 1.07995 * 120.05809 * 359.97438 * 12 11 10 40 40 H 1.07997 * 119.95047 * 180.26990 * 13 12 11 41 41 H 0.96998 * 120.00167 * 179.97438 * 19 18 16 42 42 H 1.07997 * 119.95149 * 179.97438 * 24 14 13 43 43 H 1.07994 * 120.05467 * 180.02562 * 25 24 14 44 44 H 0.97003 * 119.99811 * 5.07924 * 27 26 4 45 45 H 0.96997 * 119.99978 * 185.09329 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6589 -1.7424 1.2603 6 7 3.5047 -0.7468 1.2347 7 6 4.1686 -1.7097 1.9043 8 8 3.5513 -2.5584 2.5208 9 6 5.6308 -1.7349 1.8901 10 6 6.2987 -2.6046 2.6779 11 6 5.5849 -3.3387 3.7321 12 6 4.6957 -2.6648 4.5781 13 6 4.0248 -3.3574 5.5598 14 6 4.2384 -4.7233 5.7203 15 8 3.5798 -5.4006 6.6928 16 6 3.9113 -6.6951 6.8689 17 1 4.7242 -7.1261 6.3033 18 6 3.2085 -7.4737 7.7766 19 7 2.2185 -6.9490 8.4651 20 14 3.6674 -9.2681 8.0201 21 1 4.6869 -9.3768 9.0944 22 1 2.4588 -10.0404 8.4046 23 1 4.2216 -9.8134 6.7549 24 6 5.1256 -5.3962 4.8855 25 6 5.7964 -4.7130 3.8972 26 6 1.5625 0.0065 2.4795 27 7 0.2981 -0.1628 2.9144 28 8 2.3160 0.7443 3.0784 29 1 -0.3633 0.4599 0.9190 30 1 -0.3634 0.5660 -0.8577 31 1 -0.3634 -1.0258 -0.0612 32 1 1.8933 -0.5139 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.9966 -0.0706 0.7431 37 1 6.1764 -1.0579 1.2494 38 1 7.3576 -2.7607 2.5334 39 1 4.5332 -1.6040 4.4576 40 1 3.3354 -2.8394 6.2100 41 1 1.7269 -7.4936 9.0995 42 1 5.2886 -6.4561 5.0140 43 1 6.4844 -5.2359 3.2495 44 1 -0.2818 -0.8080 2.4803 45 1 -0.0321 0.3606 3.6613 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255026823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:46 Heat of formation + Delta-G solvation = -81.910178 kcal Electronic energy + Delta-G solvation = -28451.900533 eV Core-core repulsion = 24434.632296 eV Total energy + Delta-G solvation = -4017.268236 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.66166 -40.81100 -39.97723 -38.22813 -37.17565 -34.92801 -34.60968 -34.01681 -33.80895 -31.84569 -29.89856 -28.31751 -27.99534 -27.33592 -24.48487 -23.52686 -23.00574 -22.34331 -20.90167 -20.48786 -19.78690 -18.96271 -18.44524 -18.24152 -17.69130 -16.90382 -16.53886 -16.37853 -16.24252 -15.79311 -15.68033 -15.52620 -15.15282 -14.99462 -14.60519 -14.55035 -14.51604 -14.22781 -14.04803 -13.77592 -13.56924 -13.46956 -13.04046 -12.99921 -12.66756 -12.35112 -12.24332 -12.12092 -12.11508 -12.04791 -11.86956 -11.28268 -11.26753 -10.96749 -10.70798 -10.60646 -10.40572 -10.04438 -9.64978 -8.58998 -8.49154 -6.16154 -0.00649 0.68084 1.07531 1.33713 1.45340 1.52386 1.56567 2.13752 2.17081 2.41618 2.76377 2.85988 3.20567 3.47820 3.63082 3.81269 3.94621 3.98250 4.05071 4.12466 4.14341 4.15865 4.46038 4.52937 4.58870 4.60242 4.74852 4.77056 4.92158 4.97744 5.03521 5.08365 5.12066 5.23311 5.24315 5.31784 5.34732 5.43412 5.43849 5.65579 5.70481 5.81963 5.84281 6.01266 6.22471 6.36689 6.63074 6.94950 7.26584 7.38522 7.76948 8.74664 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.002864 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.164666 B = 9774.020028 C =10780.557857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.086 4.086 3 C -0.151 4.151 4 C 0.130 3.870 5 H 0.100 0.900 6 N -0.699 5.699 7 C 0.529 3.471 8 O -0.564 6.564 9 C -0.231 4.231 10 C 0.005 3.995 11 C -0.153 4.153 12 C 0.004 3.996 13 C -0.218 4.218 14 C 0.128 3.872 15 O -0.231 6.231 16 C -0.415 4.415 17 H 0.104 0.896 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.023 2.977 21 H -0.261 1.261 22 H -0.270 1.270 23 H -0.251 1.251 24 C -0.253 4.253 25 C -0.046 4.046 26 C 0.507 3.493 27 N -0.841 5.841 28 O -0.581 6.581 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.038 0.962 36 H 0.415 0.585 37 H 0.174 0.826 38 H 0.173 0.827 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.273 0.727 42 H 0.123 0.877 43 H 0.152 0.848 44 H 0.414 0.586 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.593 14.357 -23.103 27.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.105 4.105 3 C -0.209 4.209 4 C 0.020 3.980 5 H 0.118 0.882 6 N -0.352 5.352 7 C 0.319 3.681 8 O -0.443 6.443 9 C -0.251 4.251 10 C -0.015 4.015 11 C -0.154 4.154 12 C -0.014 4.014 13 C -0.237 4.237 14 C 0.078 3.922 15 O -0.138 6.138 16 C -0.491 4.491 17 H 0.121 0.879 18 C -0.222 4.222 19 N -0.560 5.560 20 Si 0.841 3.159 21 H -0.186 1.186 22 H -0.195 1.195 23 H -0.175 1.175 24 C -0.272 4.272 25 C -0.063 4.063 26 C 0.291 3.709 27 N -0.406 5.406 28 O -0.460 6.460 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.057 0.943 36 H 0.254 0.746 37 H 0.192 0.808 38 H 0.190 0.810 39 H 0.124 0.876 40 H 0.112 0.888 41 H 0.082 0.918 42 H 0.141 0.859 43 H 0.169 0.831 44 H 0.246 0.754 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 1.427 14.200 -22.123 26.327 hybrid contribution -0.725 -0.412 0.839 1.183 sum 0.702 13.788 -21.284 25.370 Atomic orbital electron populations 1.22097 0.92748 1.03506 1.03721 1.21331 0.97792 0.96553 0.94843 1.21909 1.01535 0.95031 1.02380 1.21027 0.82473 1.00867 0.93631 0.88199 1.45585 1.05451 1.30787 1.53361 1.19166 0.90181 0.80809 0.77895 1.90992 1.70658 1.39866 1.42823 1.23074 0.91452 1.04457 1.06106 1.22606 1.00263 0.89746 0.88839 1.18848 1.02602 0.94034 0.99915 1.20573 0.91618 0.97791 0.91406 1.20099 1.07158 0.91757 1.04728 1.19937 0.91748 0.92188 0.88373 1.83890 1.57109 1.25223 1.47536 1.21899 1.18091 0.84008 1.25121 0.87897 1.26692 0.95057 1.05505 0.94900 1.70180 1.21475 1.39119 1.25207 0.84542 0.78289 0.73302 0.79752 1.18605 1.19481 1.17452 1.21110 1.04150 1.00812 1.01120 1.21184 0.96940 0.93200 0.95021 1.21479 0.82075 0.81034 0.86292 1.43965 1.13855 1.44861 1.37912 1.90699 1.55401 1.40692 1.59220 0.92026 0.89953 0.91094 0.87345 0.92025 0.89891 0.94325 0.74641 0.80821 0.81001 0.87607 0.88756 0.91756 0.85928 0.83064 0.75402 0.76476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 8.46 71.98 0.61 -0.84 16 2 C -0.09 -1.00 2.89 -10.79 -0.03 -1.04 16 3 C -0.15 -1.78 8.77 71.98 0.63 -1.15 16 4 C 0.13 2.63 2.20 44.24 0.10 2.73 16 5 H 0.10 2.28 7.58 -2.38 -0.02 2.26 16 6 N -0.70 -14.81 4.56 -450.48 -2.06 -16.87 16 7 C 0.53 15.02 6.79 86.33 0.59 15.61 16 8 O -0.56 -21.92 12.11 -4.41 -0.05 -21.97 16 9 C -0.23 -4.99 9.90 23.61 0.23 -4.75 16 10 C 0.00 0.11 9.79 23.82 0.23 0.35 16 11 C -0.15 -5.56 4.42 -20.13 -0.09 -5.64 16 12 C 0.00 0.19 6.73 22.55 0.15 0.34 16 13 C -0.22 -11.18 9.97 22.35 0.22 -10.95 16 14 C 0.13 7.13 6.66 22.72 0.15 7.28 16 15 O -0.23 -15.00 9.74 -20.38 -0.20 -15.20 16 16 C -0.42 -25.41 9.45 67.93 0.64 -24.77 16 17 H 0.10 5.76 5.25 -2.91 -0.02 5.74 16 18 C -0.02 -1.43 5.49 84.86 0.47 -0.96 16 19 N -0.92 -58.74 13.67 21.62 0.30 -58.44 16 20 Si 1.02 44.15 29.55 68.60 2.03 46.17 16 21 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 23 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 24 C -0.25 -12.04 9.11 22.34 0.20 -11.83 16 25 C -0.05 -1.73 9.78 22.55 0.22 -1.51 16 26 C 0.51 12.92 5.64 87.66 0.49 13.41 16 27 N -0.84 -16.03 7.39 -173.54 -1.28 -17.31 16 28 O -0.58 -19.69 17.14 -3.02 -0.05 -19.74 16 29 H 0.06 0.63 5.65 -2.39 -0.01 0.61 16 30 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.11 0.93 8.14 -2.39 -0.02 0.92 16 33 H 0.06 0.67 6.56 -2.39 -0.02 0.66 16 34 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.04 0.65 7.01 -2.39 -0.02 0.63 16 36 H 0.42 6.17 6.92 -92.71 -0.64 5.53 16 37 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 39 H 0.11 4.40 7.28 -2.91 -0.02 4.38 16 40 H 0.09 4.97 8.06 -2.91 -0.02 4.94 16 41 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 42 H 0.12 5.79 5.68 -2.91 -0.02 5.77 16 43 H 0.15 4.35 8.06 -2.91 -0.02 4.32 16 44 H 0.41 5.64 7.81 -92.71 -0.72 4.92 16 45 H 0.40 7.20 8.93 -92.71 -0.83 6.37 16 Total: -1.00 -90.75 373.31 2.37 -88.37 By element: Atomic # 1 Polarization: 39.84 SS G_CDS: -1.13 Total: 38.71 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 4.82 Total: -23.73 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -3.04 Total: -92.62 kcal Atomic # 8 Polarization: -56.61 SS G_CDS: -0.30 Total: -56.91 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -90.75 2.37 -88.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255026823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.464 kcal (2) G-P(sol) polarization free energy of solvation -90.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds