Wall clock time and date at job start Tue Mar 31 2020 18:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46987 * 2 1 4 4 N 1.46492 * 109.47288 * 179.97438 * 3 2 1 5 5 C 1.34779 * 119.99843 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00306 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.99650 * 179.97438 * 5 4 3 8 8 N 1.46498 * 109.46552 * 180.02562 * 7 5 4 9 9 C 1.34785 * 119.99521 * 180.02562 * 8 7 5 10 10 O 1.21715 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.46255 * 119.99650 * 180.27579 * 9 8 7 12 12 C 1.35025 * 119.99918 * 172.93880 * 11 9 8 13 13 C 1.46960 * 119.99925 * 348.68186 * 12 11 9 14 14 C 1.40028 * 120.10009 * 316.40557 * 13 12 11 15 15 C 1.37594 * 119.89934 * 179.76739 * 14 13 12 16 16 C 1.39184 * 120.09927 * 0.50673 * 15 14 13 17 17 O 1.35570 * 119.89843 * 179.76454 * 16 15 14 18 18 C 1.34783 * 116.99886 * 174.33946 * 17 16 15 19 19 H 1.07998 * 119.99829 * 5.06153 * 18 17 16 20 20 C 1.38721 * 119.99912 * 185.05607 * 18 17 16 21 21 N 1.31504 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99732 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47291 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46914 * 120.00744 * 22 20 18 25 25 H 1.48506 * 109.46956 * 240.00440 * 22 20 18 26 26 C 1.39177 * 120.19984 * 359.74795 * 16 15 14 27 27 C 1.37596 * 120.10326 * 359.97438 * 26 16 15 28 28 H 1.09003 * 109.46987 * 60.00666 * 1 2 3 29 29 H 1.09000 * 109.46548 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47686 * 300.00279 * 1 2 3 31 31 H 1.08992 * 109.47399 * 240.00148 * 2 1 3 32 32 H 1.09003 * 109.46987 * 119.99334 * 2 1 3 33 33 H 1.09007 * 109.46779 * 59.99485 * 3 2 1 34 34 H 1.09002 * 109.46874 * 300.00450 * 3 2 1 35 35 H 0.97002 * 120.00277 * 359.97438 * 4 3 2 36 36 H 1.08992 * 109.47146 * 60.00378 * 7 5 4 37 37 H 1.09003 * 109.47133 * 299.99630 * 7 5 4 38 38 H 0.96995 * 120.00513 * 0.02562 * 8 7 5 39 39 H 1.08005 * 120.00497 * 352.93596 * 11 9 8 40 40 H 1.08000 * 120.00300 * 168.68630 * 12 11 9 41 41 H 1.08007 * 120.05004 * 0.02562 * 14 13 12 42 42 H 1.07995 * 119.95777 * 180.23340 * 15 14 13 43 43 H 0.96998 * 119.99874 * 179.97438 * 21 20 18 44 44 H 1.07998 * 119.94407 * 179.97438 * 26 16 15 45 45 H 1.08004 * 120.04756 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.1787 2.6099 0.0002 6 8 3.5723 3.6602 -0.0011 7 6 5.6858 2.6100 0.0014 8 7 6.1739 3.9912 0.0013 9 6 7.4991 4.2375 0.0018 10 8 8.2901 3.3125 0.0027 11 6 7.9865 5.6165 0.0077 12 6 9.3057 5.8656 0.1520 13 6 10.2185 4.7846 0.5495 14 6 9.8555 3.8994 1.5720 15 6 10.7112 2.8859 1.9375 16 6 11.9405 2.7462 1.2999 17 8 12.7825 1.7489 1.6666 18 6 13.9035 1.5944 0.9344 19 1 14.1379 2.2993 0.1505 20 6 14.7563 0.5300 1.1880 21 7 14.4707 -0.3284 2.1423 22 14 16.3103 0.3163 0.1737 23 1 16.4010 1.4078 -0.8290 24 1 17.4953 0.3657 1.0673 25 1 16.2702 -0.9945 -0.5232 26 6 12.3077 3.6269 0.2867 27 6 11.4560 4.6399 -0.0894 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6765 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9900 0.6026 0.0013 36 1 6.0498 2.0955 -0.8878 37 1 6.0484 2.0969 0.8922 38 1 5.5436 4.7284 0.0009 39 1 7.2912 6.4355 -0.1032 40 1 9.6901 6.8593 -0.0247 41 1 8.9035 4.0096 2.0701 42 1 10.4306 2.2004 2.7234 43 1 15.0668 -1.0729 2.3193 44 1 13.2627 3.5149 -0.2050 45 1 11.7417 5.3226 -0.8760 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255325315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:54 Heat of formation + Delta-G solvation = -53.579918 kcal Electronic energy + Delta-G solvation = -26812.601414 eV Core-core repulsion = 22796.561670 eV Total energy + Delta-G solvation = -4016.039744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.36980 -39.46713 -38.62596 -36.57466 -36.22032 -34.28815 -33.12348 -33.01761 -32.12002 -30.10766 -29.14399 -27.72297 -26.01510 -25.34520 -22.97746 -22.13701 -21.76724 -21.03142 -20.72478 -19.46437 -17.95764 -17.58548 -16.88106 -16.75639 -16.42633 -16.32821 -15.52926 -15.43984 -14.75842 -14.58175 -14.41118 -14.25326 -13.76824 -13.64152 -13.45916 -13.30748 -13.22717 -13.05765 -12.91206 -12.63087 -12.56615 -12.33654 -12.16429 -11.69185 -11.66117 -11.40008 -11.36836 -11.01482 -10.67534 -10.59444 -10.39926 -10.30542 -9.54901 -9.53417 -9.41706 -9.15612 -9.03935 -8.69048 -7.91530 -6.85334 -6.45494 -4.01087 1.25778 2.21799 2.43236 2.58508 2.71012 3.13885 3.15047 3.20258 3.45321 3.63119 3.97487 4.26780 4.38992 4.46014 4.70802 4.72420 5.06134 5.08024 5.12155 5.13188 5.18350 5.25882 5.26544 5.30032 5.36617 5.50458 5.60421 5.64441 5.69197 5.75634 5.86301 5.97292 6.26440 6.34174 6.37257 6.47760 6.61321 6.80119 7.02424 7.04875 7.13728 7.37566 7.46543 7.51366 7.66464 7.76270 7.93419 8.01596 8.50902 9.00479 9.72638 10.72502 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013412 B = 0.002140 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.103872 B =13081.114721 C =14726.566172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.118 3.882 4 N -0.729 5.729 5 C 0.511 3.489 6 O -0.539 6.539 7 C 0.102 3.898 8 N -0.726 5.726 9 C 0.542 3.458 10 O -0.513 6.513 11 C -0.264 4.264 12 C 0.028 3.972 13 C -0.189 4.189 14 C 0.012 3.988 15 C -0.203 4.203 16 C 0.171 3.829 17 O -0.174 6.174 18 C -0.389 4.389 19 H 0.094 0.906 20 C 0.038 3.962 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.250 4.250 27 C -0.041 4.041 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.405 0.595 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.407 0.593 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.540 4.886 -4.928 23.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C -0.006 4.006 4 N -0.382 5.382 5 C 0.297 3.703 6 O -0.416 6.416 7 C -0.025 4.025 8 N -0.383 5.383 9 C 0.332 3.668 10 O -0.389 6.389 11 C -0.285 4.285 12 C 0.009 3.991 13 C -0.190 4.190 14 C -0.007 4.007 15 C -0.222 4.222 16 C 0.116 3.884 17 O -0.076 6.076 18 C -0.465 4.465 19 H 0.112 0.888 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.767 3.233 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.270 4.270 27 C -0.059 4.059 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.240 0.760 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.244 0.756 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.119 0.881 42 H 0.131 0.869 43 H 0.080 0.920 44 H 0.143 0.857 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -22.314 4.567 -4.640 23.245 hybrid contribution 0.516 -0.239 -0.631 0.849 sum -21.799 4.328 -5.272 22.841 Atomic orbital electron populations 1.21677 0.94436 1.02302 1.02351 1.21755 0.97105 0.95658 1.03030 1.21439 0.79118 0.97407 1.02595 1.45934 1.07639 1.08779 1.75836 1.20701 0.90179 0.83861 0.75540 1.90692 1.70142 1.31245 1.49504 1.20964 0.89756 0.86833 1.04990 1.45721 1.07881 1.07115 1.77567 1.18500 0.81095 0.90600 0.76582 1.91000 1.53893 1.45988 1.48006 1.22545 0.96817 0.94771 1.14399 1.22341 0.92285 0.97521 0.86985 1.18306 0.96080 1.01090 1.03563 1.20450 0.95193 0.91339 0.93721 1.20000 0.93937 1.02536 1.05736 1.19530 0.89548 0.87950 0.91346 1.83905 1.29542 1.43856 1.50296 1.21445 0.97164 1.11972 1.15933 0.88830 1.25326 0.99376 0.94737 0.97180 1.70030 1.37108 1.13425 1.28917 0.85630 0.79910 0.78751 0.79052 1.19034 1.20133 1.20130 1.20954 1.02300 0.99892 1.03826 1.20745 0.92068 0.96304 0.96831 0.92333 0.92055 0.92309 0.91117 0.91071 0.91323 0.91348 0.75995 0.88441 0.88310 0.75602 0.85949 0.85945 0.88074 0.86853 0.92031 0.85653 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.91 37.16 0.37 -0.23 16 2 C -0.14 -0.60 6.05 -26.73 -0.16 -0.76 16 3 C 0.12 0.77 5.67 -4.04 -0.02 0.74 16 4 N -0.73 -5.17 5.56 -60.29 -0.33 -5.50 16 5 C 0.51 5.11 7.90 -10.98 -0.09 5.02 16 6 O -0.54 -7.04 15.67 5.56 0.09 -6.96 16 7 C 0.10 1.07 6.15 -5.19 -0.03 1.04 16 8 N -0.73 -8.81 5.52 -62.94 -0.35 -9.16 16 9 C 0.54 8.12 6.77 -13.04 -0.09 8.03 16 10 O -0.51 -9.76 12.17 5.18 0.06 -9.69 16 11 C -0.26 -3.45 9.90 -37.50 -0.37 -3.82 16 12 C 0.03 0.40 9.80 -37.19 -0.36 0.04 16 13 C -0.19 -3.51 4.54 -105.03 -0.48 -3.98 16 14 C 0.01 0.23 6.59 -39.15 -0.26 -0.03 16 15 C -0.20 -4.63 9.97 -39.47 -0.39 -5.02 16 16 C 0.17 4.34 6.66 -38.88 -0.26 4.08 16 17 O -0.17 -5.09 9.74 0.74 0.01 -5.08 16 18 C -0.39 -11.06 9.48 30.91 0.29 -10.77 16 19 H 0.09 2.47 5.18 -52.49 -0.27 2.20 16 20 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 21 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 22 Si 0.94 20.71 29.55 -169.99 -5.02 15.68 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 26 C -0.25 -5.71 9.14 -39.47 -0.36 -6.07 16 27 C -0.04 -0.80 9.78 -39.15 -0.38 -1.18 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.41 1.93 8.47 -40.82 -0.35 1.58 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.41 4.52 7.42 -40.82 -0.30 4.21 16 39 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 40 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 41 H 0.10 1.84 7.02 -52.48 -0.37 1.47 16 42 H 0.11 2.51 8.06 -52.49 -0.42 2.09 16 43 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.13 2.83 5.62 -52.49 -0.29 2.54 16 45 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 384.57 15.07 5.80 5.80 Total: -1.00 -35.42 384.57 -7.90 -43.32 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.22 Total: 8.21 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -2.69 Total: -11.95 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.08 Total: -39.33 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: 0.16 Total: -21.73 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.42 -7.90 -43.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255325315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.260 kcal (2) G-P(sol) polarization free energy of solvation -35.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds