Wall clock time and date at job start Tue Mar 31 2020 18:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46987 * 2 1 4 4 N 1.46492 * 109.47288 * 179.97438 * 3 2 1 5 5 C 1.34779 * 119.99843 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00306 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.99650 * 179.97438 * 5 4 3 8 8 N 1.46498 * 109.46552 * 180.02562 * 7 5 4 9 9 C 1.34785 * 119.99521 * 180.02562 * 8 7 5 10 10 O 1.21715 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.46255 * 119.99650 * 180.27579 * 9 8 7 12 12 C 1.35025 * 119.99918 * 172.93880 * 11 9 8 13 13 C 1.46960 * 119.99925 * 348.68186 * 12 11 9 14 14 C 1.40028 * 120.10009 * 316.40557 * 13 12 11 15 15 C 1.37594 * 119.89934 * 179.76739 * 14 13 12 16 16 C 1.39184 * 120.09927 * 0.50673 * 15 14 13 17 17 O 1.35570 * 119.89843 * 179.76454 * 16 15 14 18 18 C 1.34783 * 116.99886 * 174.33946 * 17 16 15 19 19 H 1.07998 * 119.99829 * 5.06153 * 18 17 16 20 20 C 1.38721 * 119.99912 * 185.05607 * 18 17 16 21 21 N 1.31504 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99732 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47291 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46914 * 120.00744 * 22 20 18 25 25 H 1.48506 * 109.46956 * 240.00440 * 22 20 18 26 26 C 1.39177 * 120.19984 * 359.74795 * 16 15 14 27 27 C 1.37596 * 120.10326 * 359.97438 * 26 16 15 28 28 H 1.09003 * 109.46987 * 60.00666 * 1 2 3 29 29 H 1.09000 * 109.46548 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47686 * 300.00279 * 1 2 3 31 31 H 1.08992 * 109.47399 * 240.00148 * 2 1 3 32 32 H 1.09003 * 109.46987 * 119.99334 * 2 1 3 33 33 H 1.09007 * 109.46779 * 59.99485 * 3 2 1 34 34 H 1.09002 * 109.46874 * 300.00450 * 3 2 1 35 35 H 0.97002 * 120.00277 * 359.97438 * 4 3 2 36 36 H 1.08992 * 109.47146 * 60.00378 * 7 5 4 37 37 H 1.09003 * 109.47133 * 299.99630 * 7 5 4 38 38 H 0.96995 * 120.00513 * 0.02562 * 8 7 5 39 39 H 1.08005 * 120.00497 * 352.93596 * 11 9 8 40 40 H 1.08000 * 120.00300 * 168.68630 * 12 11 9 41 41 H 1.08007 * 120.05004 * 0.02562 * 14 13 12 42 42 H 1.07995 * 119.95777 * 180.23340 * 15 14 13 43 43 H 0.96998 * 119.99874 * 179.97438 * 21 20 18 44 44 H 1.07998 * 119.94407 * 179.97438 * 26 16 15 45 45 H 1.08004 * 120.04756 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.1787 2.6099 0.0002 6 8 3.5723 3.6602 -0.0011 7 6 5.6858 2.6100 0.0014 8 7 6.1739 3.9912 0.0013 9 6 7.4991 4.2375 0.0018 10 8 8.2901 3.3125 0.0027 11 6 7.9865 5.6165 0.0077 12 6 9.3057 5.8656 0.1520 13 6 10.2185 4.7846 0.5495 14 6 9.8555 3.8994 1.5720 15 6 10.7112 2.8859 1.9375 16 6 11.9405 2.7462 1.2999 17 8 12.7825 1.7489 1.6666 18 6 13.9035 1.5944 0.9344 19 1 14.1379 2.2993 0.1505 20 6 14.7563 0.5300 1.1880 21 7 14.4707 -0.3284 2.1423 22 14 16.3103 0.3163 0.1737 23 1 16.4010 1.4078 -0.8290 24 1 17.4953 0.3657 1.0673 25 1 16.2702 -0.9945 -0.5232 26 6 12.3077 3.6269 0.2867 27 6 11.4560 4.6399 -0.0894 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6765 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9900 0.6026 0.0013 36 1 6.0498 2.0955 -0.8878 37 1 6.0484 2.0969 0.8922 38 1 5.5436 4.7284 0.0009 39 1 7.2912 6.4355 -0.1032 40 1 9.6901 6.8593 -0.0247 41 1 8.9035 4.0096 2.0701 42 1 10.4306 2.2004 2.7234 43 1 15.0668 -1.0729 2.3193 44 1 13.2627 3.5149 -0.2050 45 1 11.7417 5.3226 -0.8760 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255325315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:53 Heat of formation + Delta-G solvation = -79.560292 kcal Electronic energy + Delta-G solvation = -26813.728008 eV Core-core repulsion = 22796.561670 eV Total energy + Delta-G solvation = -4017.166338 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.36315 -40.80276 -40.16282 -38.18234 -36.92389 -35.41785 -34.58043 -33.92422 -33.65370 -31.80083 -30.29443 -28.98600 -27.41801 -26.59822 -24.28046 -23.45694 -22.62567 -22.39838 -21.60243 -20.67249 -19.78605 -18.98391 -18.34169 -17.71405 -17.35965 -17.15500 -16.51748 -16.34556 -16.30547 -16.15405 -15.68669 -15.61246 -15.42027 -15.00781 -14.64583 -14.46168 -14.34224 -14.19077 -13.84479 -13.78573 -13.70400 -13.54571 -13.27140 -13.01898 -12.96597 -12.64487 -12.32853 -12.21955 -12.08379 -12.05984 -11.77776 -11.21933 -11.16511 -10.98457 -10.72246 -10.40210 -10.26150 -10.08679 -9.56418 -8.54601 -8.47288 -6.14232 -0.00939 0.73732 1.12907 1.34811 1.40360 1.45588 1.53885 1.80788 2.17974 2.45087 2.53200 2.88402 3.22662 3.54102 3.58426 3.89596 4.00529 4.05132 4.07959 4.17196 4.19349 4.30504 4.33046 4.39458 4.57383 4.62098 4.65191 4.72278 4.79079 4.83278 5.07028 5.11251 5.14731 5.22596 5.24829 5.27450 5.27956 5.36432 5.42532 5.46784 5.69573 5.74524 5.85929 6.04154 6.26545 6.35589 6.61897 6.96868 7.02647 7.36492 7.79096 8.75961 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013412 B = 0.002140 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.103872 B =13081.114721 C =14726.566172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C 0.117 3.883 4 N -0.716 5.716 5 C 0.515 3.485 6 O -0.571 6.571 7 C 0.100 3.900 8 N -0.713 5.713 9 C 0.532 3.468 10 O -0.561 6.561 11 C -0.234 4.234 12 C 0.011 3.989 13 C -0.162 4.162 14 C 0.013 3.987 15 C -0.219 4.219 16 C 0.127 3.873 17 O -0.231 6.231 18 C -0.414 4.414 19 H 0.103 0.897 20 C -0.025 4.025 21 N -0.920 5.920 22 Si 1.021 2.979 23 H -0.251 1.251 24 H -0.266 1.266 25 H -0.268 1.268 26 C -0.259 4.259 27 C -0.046 4.046 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.418 0.582 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.415 0.585 39 H 0.169 0.831 40 H 0.170 0.830 41 H 0.120 0.880 42 H 0.103 0.897 43 H 0.273 0.727 44 H 0.120 0.880 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.475 7.456 -6.932 26.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.006 4.006 4 N -0.368 5.368 5 C 0.301 3.699 6 O -0.451 6.451 7 C -0.027 4.027 8 N -0.369 5.369 9 C 0.323 3.677 10 O -0.441 6.441 11 C -0.255 4.255 12 C -0.009 4.009 13 C -0.163 4.163 14 C -0.005 4.005 15 C -0.238 4.238 16 C 0.077 3.923 17 O -0.137 6.137 18 C -0.490 4.490 19 H 0.120 0.880 20 C -0.222 4.222 21 N -0.559 5.559 22 Si 0.840 3.160 23 H -0.174 1.174 24 H -0.191 1.191 25 H -0.193 1.193 26 C -0.278 4.278 27 C -0.064 4.064 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.255 0.745 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.254 0.746 39 H 0.186 0.814 40 H 0.187 0.813 41 H 0.138 0.862 42 H 0.121 0.879 43 H 0.082 0.918 44 H 0.137 0.863 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -24.340 7.168 -6.656 26.232 hybrid contribution 0.591 -0.790 -0.070 0.989 sum -23.748 6.378 -6.727 25.493 Atomic orbital electron populations 1.21690 0.94080 1.02768 1.02307 1.21713 0.97314 0.94119 1.03657 1.21510 0.78418 0.98796 1.01882 1.45889 1.08108 1.08600 1.74204 1.20572 0.89831 0.84110 0.75339 1.90679 1.70552 1.32415 1.51411 1.21049 0.90209 0.86104 1.05356 1.45650 1.07284 1.08177 1.75742 1.19019 0.81520 0.91172 0.75986 1.91009 1.55161 1.47533 1.50373 1.22986 0.97094 0.94734 1.10656 1.22579 0.91752 0.97954 0.88572 1.18869 0.96043 1.00456 1.00914 1.20683 0.95045 0.90641 0.94117 1.20178 0.94015 1.03804 1.05841 1.20017 0.90373 0.88534 0.93413 1.83874 1.30936 1.46477 1.52405 1.21919 0.97657 1.12816 1.16564 0.88008 1.26657 1.03094 0.93979 0.98458 1.70177 1.39234 1.14786 1.31654 0.84495 0.74845 0.79162 0.77459 1.17409 1.19129 1.19338 1.21088 1.02904 1.00520 1.03269 1.21171 0.91886 0.95780 0.97578 0.92355 0.91328 0.92442 0.90395 0.90511 0.92126 0.91999 0.74527 0.87963 0.88126 0.74621 0.81384 0.81289 0.86223 0.87880 0.91787 0.86272 0.83465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 71.98 0.71 -0.28 16 2 C -0.13 -0.92 6.05 30.60 0.19 -0.73 16 3 C 0.12 1.37 5.67 86.38 0.49 1.86 16 4 N -0.72 -9.04 5.56 -463.05 -2.57 -11.61 16 5 C 0.52 9.49 7.90 87.66 0.69 10.18 16 6 O -0.57 -14.02 15.67 -3.02 -0.05 -14.07 16 7 C 0.10 1.93 6.15 85.64 0.53 2.46 16 8 N -0.71 -15.32 5.52 -471.23 -2.60 -17.92 16 9 C 0.53 14.26 6.77 86.32 0.58 14.84 16 10 O -0.56 -20.45 12.17 -4.40 -0.05 -20.50 16 11 C -0.23 -4.85 9.90 23.62 0.23 -4.61 16 12 C 0.01 0.25 9.80 23.82 0.23 0.48 16 13 C -0.16 -5.56 4.54 -20.13 -0.09 -5.65 16 14 C 0.01 0.53 6.59 22.55 0.15 0.67 16 15 C -0.22 -10.48 9.97 22.35 0.22 -10.25 16 16 C 0.13 6.85 6.66 22.72 0.15 7.00 16 17 O -0.23 -14.62 9.74 -20.28 -0.20 -14.81 16 18 C -0.41 -25.00 9.48 67.94 0.64 -24.36 16 19 H 0.10 5.67 5.18 -2.91 -0.02 5.65 16 20 C -0.02 -1.43 5.49 84.86 0.47 -0.97 16 21 N -0.92 -57.87 13.67 21.62 0.30 -57.57 16 22 Si 1.02 43.89 29.55 68.60 2.03 45.92 16 23 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 C -0.26 -12.05 9.14 22.34 0.20 -11.84 16 27 C -0.05 -1.70 9.78 22.55 0.22 -1.48 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.38 16 31 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.42 3.25 8.47 -92.71 -0.79 2.46 16 36 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.10 1.94 8.14 -2.39 -0.02 1.93 16 38 H 0.42 7.82 7.42 -92.71 -0.69 7.13 16 39 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 40 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 41 H 0.12 4.16 7.02 -2.91 -0.02 4.14 16 42 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 43 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.12 5.57 5.62 -2.91 -0.02 5.55 16 45 H 0.15 4.18 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -84.25 384.57 2.03 -82.22 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: -0.44 Total: 31.03 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: 5.63 Total: -22.67 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -4.88 Total: -87.11 kcal Atomic # 8 Polarization: -49.08 SS G_CDS: -0.30 Total: -49.38 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -84.25 2.03 -82.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255325315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.661 kcal (2) G-P(sol) polarization free energy of solvation -84.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds