Wall clock time and date at job start Tue Mar 31 2020 16:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47110 * 2 1 4 4 C 1.53004 * 109.47145 * 240.00206 * 2 1 3 5 5 C 1.50700 * 109.47363 * 119.99933 * 2 1 3 6 6 O 1.21275 * 119.99766 * 359.97438 * 5 2 1 7 7 N 1.34776 * 120.00046 * 180.02562 * 5 2 1 8 8 N 1.40102 * 120.00019 * 179.97438 * 7 5 2 9 9 C 1.34778 * 120.00208 * 179.97438 * 8 7 5 10 10 O 1.21728 * 119.99568 * 0.02562 * 9 8 7 11 11 C 1.46251 * 120.00051 * 180.02562 * 9 8 7 12 12 C 1.35020 * 119.99746 * 173.22611 * 11 9 8 13 13 C 1.46960 * 120.00114 * 348.50565 * 12 11 9 14 14 C 1.40029 * 120.10159 * 316.62430 * 13 12 11 15 15 C 1.37600 * 119.89966 * 179.78806 * 14 13 12 16 16 C 1.39180 * 120.09660 * 0.49222 * 15 14 13 17 17 O 1.35566 * 119.89295 * 179.76315 * 16 15 14 18 18 C 1.34785 * 116.99700 * 174.34817 * 17 16 15 19 19 H 1.07998 * 120.00073 * 5.05545 * 18 17 16 20 20 C 1.38728 * 119.99885 * 185.06076 * 18 17 16 21 21 N 1.31500 * 120.00085 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99858 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47092 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46842 * 119.99675 * 22 20 18 25 25 H 1.48495 * 109.46964 * 239.99801 * 22 20 18 26 26 C 1.39169 * 120.20665 * 359.73931 * 16 15 14 27 27 C 1.37607 * 120.10298 * 0.02562 * 26 16 15 28 28 H 1.09002 * 109.46839 * 299.99749 * 1 2 3 29 29 H 1.09003 * 109.47179 * 60.00111 * 1 2 3 30 30 H 1.08997 * 109.46806 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47281 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47009 * 299.99993 * 3 2 1 33 33 H 1.08997 * 109.47630 * 59.99697 * 3 2 1 34 34 H 1.09000 * 109.46456 * 299.99561 * 4 2 1 35 35 H 1.08993 * 109.47371 * 59.99220 * 4 2 1 36 36 H 1.08999 * 109.47059 * 179.97438 * 4 2 1 37 37 H 0.96996 * 119.99933 * 359.97438 * 7 5 2 38 38 H 0.97001 * 119.99751 * 0.02562 * 8 7 5 39 39 H 1.07992 * 119.99853 * 352.95076 * 11 9 8 40 40 H 1.08002 * 120.00212 * 168.51184 * 12 11 9 41 41 H 1.07996 * 120.04961 * 0.02562 * 14 13 12 42 42 H 1.07998 * 119.94853 * 180.23277 * 15 14 13 43 43 H 0.96995 * 120.00258 * 180.02562 * 21 20 18 44 44 H 1.07995 * 119.95327 * 179.97438 * 26 16 15 45 45 H 1.07996 * 120.05365 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2305 6 8 1.2443 -1.1709 2.0290 7 7 3.3575 -0.8330 1.4440 8 7 3.8245 -1.4930 2.5881 9 6 5.1496 -1.6161 2.8014 10 8 5.9406 -1.1535 2.0001 11 6 5.6371 -2.3056 3.9956 12 6 6.9569 -2.5497 4.1426 13 6 7.8707 -2.3570 3.0079 14 6 7.5092 -2.8045 1.7312 15 6 8.3661 -2.6180 0.6709 16 6 9.5949 -1.9948 0.8678 17 8 10.4380 -1.8175 -0.1789 18 6 11.5587 -1.1051 0.0520 19 1 11.7918 -0.7747 1.0535 20 6 12.4125 -0.7960 -0.9967 21 7 12.1289 -1.1985 -2.2161 22 14 13.9653 0.1920 -0.6768 23 1 14.0539 0.5206 0.7686 24 1 15.1515 -0.6073 -1.0758 25 1 13.9251 1.4474 -1.4689 26 6 9.9606 -1.5527 2.1358 27 6 9.1080 -1.7306 3.2012 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 3.9877 -0.4644 0.8055 38 1 3.1942 -1.8620 3.2265 39 1 4.9420 -2.6154 4.7618 40 1 7.3411 -2.8867 5.0940 41 1 6.5577 -3.2918 1.5783 42 1 8.0865 -2.9595 -0.3148 43 1 12.7260 -0.9828 -2.9493 44 1 10.9152 -1.0700 2.2840 45 1 9.3924 -1.3868 4.1847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255710940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:43 Heat of formation + Delta-G solvation = -22.131065 kcal Electronic energy + Delta-G solvation = -27746.586975 eV Core-core repulsion = 23731.910955 eV Total energy + Delta-G solvation = -4014.676020 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.72020 -39.58596 -38.72068 -36.69292 -35.99065 -35.25409 -33.18576 -32.23762 -31.19427 -30.18264 -28.04208 -27.70627 -27.40227 -25.51602 -24.16728 -22.73828 -21.88536 -21.36403 -20.46665 -18.83785 -18.01998 -17.91270 -17.40154 -16.79182 -16.34142 -15.68695 -15.12855 -14.81654 -14.64901 -14.52046 -14.32214 -14.23268 -13.87971 -13.68865 -13.49801 -13.42330 -13.08677 -12.74272 -12.65847 -12.56456 -12.34177 -12.26497 -12.04884 -11.74688 -11.52119 -11.35564 -11.29698 -11.22590 -11.06865 -10.76197 -10.66009 -10.44288 -10.16126 -9.71429 -9.51819 -9.23747 -8.76682 -8.41166 -7.97105 -6.94070 -6.50850 -4.06370 1.09909 1.80358 2.26504 2.38031 2.63003 3.10495 3.11650 3.17000 3.46389 3.86512 3.93029 4.33632 4.42054 4.48732 4.63999 4.78904 5.01683 5.06273 5.15275 5.22480 5.25499 5.29384 5.38507 5.46663 5.49975 5.52452 5.56517 5.67736 5.76784 5.78020 5.85963 5.94304 6.16134 6.20510 6.33715 6.49416 6.62586 6.69992 6.75960 6.97496 7.07233 7.30226 7.38426 7.44799 7.52117 7.82921 7.86177 7.95897 8.42527 8.94914 9.66020 10.66889 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.002630 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.426615 B =10642.660523 C =12121.921238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 C -0.146 4.146 4 C -0.146 4.146 5 C 0.521 3.479 6 O -0.546 6.546 7 N -0.518 5.518 8 N -0.531 5.531 9 C 0.542 3.458 10 O -0.512 6.512 11 C -0.264 4.264 12 C 0.040 3.960 13 C -0.196 4.196 14 C 0.011 3.989 15 C -0.203 4.203 16 C 0.172 3.828 17 O -0.171 6.171 18 C -0.390 4.390 19 H 0.095 0.905 20 C 0.039 3.961 21 N -0.858 5.858 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.251 4.251 27 C -0.038 4.038 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.432 0.568 38 H 0.426 0.574 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.271 0.729 44 H 0.126 0.874 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.311 1.355 7.473 19.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.079 4.079 3 C -0.203 4.203 4 C -0.204 4.204 5 C 0.307 3.693 6 O -0.422 6.422 7 N -0.265 5.265 8 N -0.281 5.281 9 C 0.333 3.667 10 O -0.387 6.387 11 C -0.286 4.286 12 C 0.020 3.980 13 C -0.197 4.197 14 C -0.007 4.007 15 C -0.222 4.222 16 C 0.117 3.883 17 O -0.073 6.073 18 C -0.466 4.466 19 H 0.112 0.888 20 C -0.166 4.166 21 N -0.493 5.493 22 Si 0.767 3.233 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.270 4.270 27 C -0.057 4.057 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.275 0.725 38 H 0.268 0.732 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.119 0.881 42 H 0.132 0.868 43 H 0.081 0.919 44 H 0.144 0.856 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.169 1.314 6.966 19.503 hybrid contribution 0.699 0.551 0.269 0.930 sum -17.470 1.865 7.235 19.000 Atomic orbital electron populations 1.21677 0.91363 1.03052 1.02322 1.20767 0.98195 0.96404 0.92507 1.21947 1.01720 0.93397 1.03281 1.21951 1.01794 1.00743 0.95909 1.20883 0.80246 0.80077 0.88081 1.90693 1.54883 1.49436 1.47156 1.44953 1.07181 1.56299 1.18030 1.45104 1.07438 1.57870 1.17683 1.18739 0.79699 0.81058 0.87223 1.91022 1.53281 1.48380 1.46003 1.22284 0.96928 1.10409 0.99007 1.22366 0.92002 0.87062 0.96521 1.18299 0.96216 1.11902 0.93236 1.20450 0.95235 0.94210 0.90837 1.20003 0.93941 1.09172 0.99108 1.19532 0.89510 0.91599 0.87651 1.83905 1.29465 1.62265 1.31691 1.21459 0.97167 1.31878 0.96096 0.88775 1.25339 0.99384 0.97494 0.94337 1.70023 1.37072 1.42688 0.99470 0.85627 0.79844 0.78941 0.78921 1.19004 1.20075 1.20068 1.20964 1.02335 1.10880 0.92806 1.20754 0.91949 0.95540 0.97431 0.91815 0.91589 0.91768 0.91720 0.90792 0.91827 0.91754 0.90789 0.91647 0.72524 0.73218 0.85530 0.85523 0.88098 0.86814 0.91938 0.85586 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 7.76 37.16 0.29 -0.70 16 2 C -0.07 -0.62 0.87 -155.66 -0.14 -0.76 16 3 C -0.15 -1.06 8.37 37.16 0.31 -0.75 16 4 C -0.15 -1.10 8.37 37.16 0.31 -0.79 16 5 C 0.52 5.95 6.60 -10.99 -0.07 5.88 16 6 O -0.55 -7.69 15.82 5.56 0.09 -7.60 16 7 N -0.52 -6.12 6.05 31.22 0.19 -5.93 16 8 N -0.53 -6.48 6.25 30.16 0.19 -6.30 16 9 C 0.54 7.69 6.88 -13.04 -0.09 7.60 16 10 O -0.51 -9.25 12.02 5.16 0.06 -9.19 16 11 C -0.26 -3.14 9.90 -37.51 -0.37 -3.51 16 12 C 0.04 0.53 9.80 -37.19 -0.36 0.16 16 13 C -0.20 -3.44 4.54 -105.02 -0.48 -3.92 16 14 C 0.01 0.22 6.60 -39.14 -0.26 -0.04 16 15 C -0.20 -4.49 9.97 -39.46 -0.39 -4.89 16 16 C 0.17 4.25 6.66 -38.89 -0.26 3.99 16 17 O -0.17 -4.92 9.74 0.74 0.01 -4.91 16 18 C -0.39 -10.89 9.48 30.91 0.29 -10.59 16 19 H 0.09 2.44 5.18 -52.49 -0.27 2.17 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -25.01 13.67 55.48 0.76 -24.25 16 22 Si 0.94 20.37 29.55 -169.99 -5.02 15.34 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 26 C -0.25 -5.54 9.14 -39.47 -0.36 -5.90 16 27 C -0.04 -0.71 9.79 -39.14 -0.38 -1.10 16 28 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 31 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.52 7.57 -51.93 -0.39 0.12 16 37 H 0.43 5.05 6.83 -182.60 -1.25 3.80 16 38 H 0.43 4.55 7.98 -182.60 -1.46 3.09 16 39 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.10 1.76 7.01 -52.49 -0.37 1.39 16 42 H 0.11 2.46 8.06 -52.49 -0.42 2.03 16 43 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.13 2.77 5.62 -52.49 -0.29 2.47 16 45 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 379.86 15.07 5.72 5.72 Total: -1.00 -34.03 379.86 -8.27 -42.30 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -8.21 Total: 9.13 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -2.06 Total: -14.32 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 1.14 Total: -36.48 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: 0.16 Total: -21.70 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.03 -8.27 -42.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255710940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.173 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds