Wall clock time and date at job start Tue Mar 31 2020 16:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47110 * 2 1 4 4 C 1.53004 * 109.47145 * 240.00206 * 2 1 3 5 5 C 1.50700 * 109.47363 * 119.99933 * 2 1 3 6 6 O 1.21275 * 119.99766 * 359.97438 * 5 2 1 7 7 N 1.34776 * 120.00046 * 180.02562 * 5 2 1 8 8 N 1.40102 * 120.00019 * 179.97438 * 7 5 2 9 9 C 1.34778 * 120.00208 * 179.97438 * 8 7 5 10 10 O 1.21728 * 119.99568 * 0.02562 * 9 8 7 11 11 C 1.46251 * 120.00051 * 180.02562 * 9 8 7 12 12 C 1.35020 * 119.99746 * 173.22611 * 11 9 8 13 13 C 1.46960 * 120.00114 * 348.50565 * 12 11 9 14 14 C 1.40029 * 120.10159 * 316.62430 * 13 12 11 15 15 C 1.37600 * 119.89966 * 179.78806 * 14 13 12 16 16 C 1.39180 * 120.09660 * 0.49222 * 15 14 13 17 17 O 1.35566 * 119.89295 * 179.76315 * 16 15 14 18 18 C 1.34785 * 116.99700 * 174.34817 * 17 16 15 19 19 H 1.07998 * 120.00073 * 5.05545 * 18 17 16 20 20 C 1.38728 * 119.99885 * 185.06076 * 18 17 16 21 21 N 1.31500 * 120.00085 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99858 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47092 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46842 * 119.99675 * 22 20 18 25 25 H 1.48495 * 109.46964 * 239.99801 * 22 20 18 26 26 C 1.39169 * 120.20665 * 359.73931 * 16 15 14 27 27 C 1.37607 * 120.10298 * 0.02562 * 26 16 15 28 28 H 1.09002 * 109.46839 * 299.99749 * 1 2 3 29 29 H 1.09003 * 109.47179 * 60.00111 * 1 2 3 30 30 H 1.08997 * 109.46806 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47281 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47009 * 299.99993 * 3 2 1 33 33 H 1.08997 * 109.47630 * 59.99697 * 3 2 1 34 34 H 1.09000 * 109.46456 * 299.99561 * 4 2 1 35 35 H 1.08993 * 109.47371 * 59.99220 * 4 2 1 36 36 H 1.08999 * 109.47059 * 179.97438 * 4 2 1 37 37 H 0.96996 * 119.99933 * 359.97438 * 7 5 2 38 38 H 0.97001 * 119.99751 * 0.02562 * 8 7 5 39 39 H 1.07992 * 119.99853 * 352.95076 * 11 9 8 40 40 H 1.08002 * 120.00212 * 168.51184 * 12 11 9 41 41 H 1.07996 * 120.04961 * 0.02562 * 14 13 12 42 42 H 1.07998 * 119.94853 * 180.23277 * 15 14 13 43 43 H 0.96995 * 120.00258 * 180.02562 * 21 20 18 44 44 H 1.07995 * 119.95327 * 179.97438 * 26 16 15 45 45 H 1.07996 * 120.05365 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2305 6 8 1.2443 -1.1709 2.0290 7 7 3.3575 -0.8330 1.4440 8 7 3.8245 -1.4930 2.5881 9 6 5.1496 -1.6161 2.8014 10 8 5.9406 -1.1535 2.0001 11 6 5.6371 -2.3056 3.9956 12 6 6.9569 -2.5497 4.1426 13 6 7.8707 -2.3570 3.0079 14 6 7.5092 -2.8045 1.7312 15 6 8.3661 -2.6180 0.6709 16 6 9.5949 -1.9948 0.8678 17 8 10.4380 -1.8175 -0.1789 18 6 11.5587 -1.1051 0.0520 19 1 11.7918 -0.7747 1.0535 20 6 12.4125 -0.7960 -0.9967 21 7 12.1289 -1.1985 -2.2161 22 14 13.9653 0.1920 -0.6768 23 1 14.0539 0.5206 0.7686 24 1 15.1515 -0.6073 -1.0758 25 1 13.9251 1.4474 -1.4689 26 6 9.9606 -1.5527 2.1358 27 6 9.1080 -1.7306 3.2012 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 3.9877 -0.4644 0.8055 38 1 3.1942 -1.8620 3.2265 39 1 4.9420 -2.6154 4.7618 40 1 7.3411 -2.8867 5.0940 41 1 6.5577 -3.2918 1.5783 42 1 8.0865 -2.9595 -0.3148 43 1 12.7260 -0.9828 -2.9493 44 1 10.9152 -1.0700 2.2840 45 1 9.3924 -1.3868 4.1847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255710940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:42 Heat of formation + Delta-G solvation = -45.586100 kcal Electronic energy + Delta-G solvation = -27747.604062 eV Core-core repulsion = 23731.910955 eV Total energy + Delta-G solvation = -4015.693106 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.72571 -40.92048 -40.25264 -38.25666 -36.82584 -36.38410 -34.63358 -33.99832 -32.29662 -31.82371 -29.50735 -28.31042 -28.06857 -27.42474 -25.27250 -23.87900 -23.48264 -22.69956 -21.58993 -20.08042 -19.64394 -18.99085 -18.83003 -18.19818 -17.35786 -16.68439 -16.41366 -16.29775 -16.13258 -15.84804 -15.57133 -15.50627 -15.05169 -14.91597 -14.70098 -14.57672 -14.51281 -14.22638 -13.80965 -13.56397 -13.41633 -13.16050 -13.08308 -12.96984 -12.70300 -12.68137 -12.40555 -12.31282 -12.25276 -12.09304 -11.98011 -11.94736 -11.25428 -11.20690 -10.95440 -10.78955 -10.41901 -9.71835 -9.34597 -8.58282 -8.48597 -6.15455 -0.08925 0.70487 0.85460 1.06029 1.34399 1.38467 1.45602 1.53240 2.16955 2.34472 2.86932 2.99051 3.20834 3.47063 3.52367 3.73049 3.83202 3.93352 4.02836 4.13329 4.16423 4.18977 4.54454 4.58773 4.64505 4.65975 4.76279 4.77226 4.87901 4.91058 4.95158 5.04247 5.07882 5.17066 5.20891 5.24451 5.25499 5.31063 5.39160 5.60835 5.64406 5.71379 5.73936 5.87206 6.02770 6.24204 6.51363 6.84149 6.95765 7.35665 7.77495 8.74704 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.002630 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.426615 B =10642.660523 C =12121.921238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.070 4.070 3 C -0.144 4.144 4 C -0.145 4.145 5 C 0.520 3.480 6 O -0.572 6.572 7 N -0.522 5.522 8 N -0.521 5.521 9 C 0.533 3.467 10 O -0.558 6.558 11 C -0.230 4.230 12 C 0.023 3.977 13 C -0.166 4.166 14 C 0.013 3.987 15 C -0.219 4.219 16 C 0.129 3.871 17 O -0.230 6.230 18 C -0.414 4.414 19 H 0.103 0.897 20 C -0.023 4.023 21 N -0.920 5.920 22 Si 1.020 2.980 23 H -0.250 1.250 24 H -0.267 1.267 25 H -0.268 1.268 26 C -0.259 4.259 27 C -0.043 4.043 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.432 0.568 38 H 0.436 0.564 39 H 0.177 0.823 40 H 0.177 0.823 41 H 0.119 0.881 42 H 0.102 0.898 43 H 0.273 0.727 44 H 0.120 0.880 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.354 1.801 10.874 23.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.075 4.075 3 C -0.202 4.202 4 C -0.203 4.203 5 C 0.308 3.692 6 O -0.450 6.450 7 N -0.269 5.269 8 N -0.270 5.270 9 C 0.324 3.676 10 O -0.436 6.436 11 C -0.252 4.252 12 C 0.004 3.996 13 C -0.167 4.167 14 C -0.005 4.005 15 C -0.239 4.239 16 C 0.078 3.922 17 O -0.136 6.136 18 C -0.490 4.490 19 H 0.120 0.880 20 C -0.221 4.221 21 N -0.558 5.558 22 Si 0.839 3.161 23 H -0.174 1.174 24 H -0.191 1.191 25 H -0.193 1.193 26 C -0.278 4.278 27 C -0.061 4.061 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.275 0.725 38 H 0.279 0.721 39 H 0.195 0.805 40 H 0.194 0.806 41 H 0.137 0.863 42 H 0.120 0.880 43 H 0.082 0.918 44 H 0.137 0.863 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -20.294 1.738 10.433 22.885 hybrid contribution 0.795 0.322 -0.494 0.989 sum -19.500 2.060 9.939 21.983 Atomic orbital electron populations 1.21686 0.90682 1.02681 1.03144 1.20841 0.98614 0.96752 0.91264 1.21960 1.01371 0.92649 1.04202 1.21966 1.01357 1.00683 0.96286 1.21524 0.79674 0.79437 0.88546 1.90676 1.55388 1.50639 1.48304 1.45164 1.07474 1.56255 1.17963 1.45073 1.07283 1.56882 1.17771 1.19348 0.79832 0.80798 0.87595 1.91034 1.54469 1.50330 1.47755 1.22765 0.97233 1.06998 0.98177 1.22631 0.91399 0.88924 0.96648 1.18875 0.96168 1.07546 0.94099 1.20678 0.95045 0.93931 0.90887 1.20172 0.94049 1.09699 0.99953 1.20021 0.90318 0.93589 0.88265 1.83876 1.30884 1.65095 1.33733 1.21919 0.97670 1.32527 0.96860 0.87971 1.26643 1.03039 0.98570 0.93815 1.70169 1.39198 1.45677 1.00744 0.84510 0.74893 0.77134 0.79532 1.17374 1.19149 1.19346 1.21101 1.02955 1.10852 0.92919 1.21190 0.91772 0.95029 0.98145 0.92605 0.89153 0.92732 0.92290 0.88736 0.92080 0.92233 0.88732 0.92355 0.72525 0.72069 0.80534 0.80614 0.86305 0.88003 0.91760 0.86268 0.83295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.73 7.76 71.98 0.56 -1.17 16 2 C -0.07 -1.08 0.87 -52.93 -0.05 -1.13 16 3 C -0.14 -1.87 8.37 71.98 0.60 -1.27 16 4 C -0.15 -2.00 8.37 71.98 0.60 -1.40 16 5 C 0.52 11.26 6.60 87.66 0.58 11.84 16 6 O -0.57 -15.38 15.82 -3.01 -0.05 -15.43 16 7 N -0.52 -11.68 6.05 -173.54 -1.05 -12.73 16 8 N -0.52 -11.36 6.25 -176.68 -1.11 -12.47 16 9 C 0.53 13.44 6.88 86.32 0.59 14.03 16 10 O -0.56 -19.31 12.02 -4.44 -0.05 -19.37 16 11 C -0.23 -4.15 9.90 23.61 0.23 -3.92 16 12 C 0.02 0.48 9.80 23.82 0.23 0.71 16 13 C -0.17 -5.37 4.54 -20.13 -0.09 -5.46 16 14 C 0.01 0.48 6.60 22.55 0.15 0.63 16 15 C -0.22 -10.22 9.97 22.35 0.22 -10.00 16 16 C 0.13 6.78 6.66 22.72 0.15 6.93 16 17 O -0.23 -14.33 9.74 -20.26 -0.20 -14.53 16 18 C -0.41 -24.67 9.48 67.94 0.64 -24.02 16 19 H 0.10 5.60 5.18 -2.91 -0.02 5.58 16 20 C -0.02 -1.34 5.49 84.86 0.47 -0.87 16 21 N -0.92 -57.30 13.67 21.62 0.30 -57.01 16 22 Si 1.02 43.35 29.55 68.60 2.03 45.38 16 23 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 24 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 26 C -0.26 -11.72 9.14 22.34 0.20 -11.52 16 27 C -0.04 -1.53 9.79 22.55 0.22 -1.31 16 28 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.86 8.10 -2.39 -0.02 0.85 16 31 H 0.06 0.84 7.56 -2.38 -0.02 0.82 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 0.89 7.57 -2.39 -0.02 0.87 16 37 H 0.43 9.89 6.83 -213.32 -1.46 8.44 16 38 H 0.44 7.85 7.98 -213.32 -1.70 6.15 16 39 H 0.18 1.57 8.06 -2.91 -0.02 1.54 16 40 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 41 H 0.12 3.96 7.01 -2.91 -0.02 3.94 16 42 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.12 5.43 5.62 -2.91 -0.02 5.42 16 45 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -82.43 379.86 3.07 -79.36 By element: Atomic # 1 Polarization: 36.83 SS G_CDS: -2.13 Total: 34.70 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 5.32 Total: -27.91 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -1.86 Total: -82.20 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -0.30 Total: -49.33 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -82.43 3.07 -79.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255710940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.774 kcal (2) G-P(sol) polarization free energy of solvation -82.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds