Wall clock time and date at job start Tue Mar 31 2020 17:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47183 * 2 1 4 4 N 1.46506 * 109.47160 * 180.02562 * 3 2 1 5 5 C 1.34773 * 119.99606 * 89.99903 * 4 3 2 6 6 O 1.21358 * 120.00320 * 354.18937 * 5 4 3 7 7 C 1.49360 * 119.99874 * 174.18112 * 5 4 3 8 8 O 1.21373 * 119.99772 * 359.68910 * 7 5 4 9 9 N 1.34775 * 120.00166 * 179.68592 * 7 5 4 10 10 C 1.39719 * 119.99849 * 184.07903 * 9 7 5 11 11 C 1.39020 * 120.04040 * 144.45721 * 10 9 7 12 12 C 1.38140 * 120.06369 * 179.97438 * 11 10 9 13 13 C 1.38182 * 120.14132 * 359.97438 * 12 11 10 14 14 C 1.38913 * 120.08342 * 0.05149 * 13 12 11 15 15 O 1.35752 * 120.03280 * 179.97438 * 14 13 12 16 16 C 1.34831 * 116.99660 * 6.56538 * 15 14 13 17 17 H 1.08002 * 120.00176 * 6.35692 * 16 15 14 18 18 C 1.38657 * 119.99951 * 186.35422 * 16 15 14 19 19 N 1.31561 * 119.99619 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00088 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46776 * 59.99995 * 20 18 16 22 22 H 1.48503 * 109.47145 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47169 * 300.00521 * 20 18 16 24 24 C 1.38758 * 119.93970 * 359.93097 * 14 13 12 25 25 C 1.46495 * 119.99996 * 270.00205 * 4 3 2 26 26 C 1.52998 * 117.50158 * 1.51012 * 25 4 3 27 27 C 1.52998 * 60.00106 * 252.50753 * 26 25 4 28 28 H 1.09005 * 109.47090 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46774 * 299.99438 * 1 2 3 30 30 H 1.08997 * 109.47464 * 59.99549 * 1 2 3 31 31 H 1.09005 * 109.47123 * 239.99883 * 2 1 3 32 32 H 1.08997 * 109.47464 * 120.00451 * 2 1 3 33 33 H 1.09002 * 109.46806 * 60.00581 * 3 2 1 34 34 H 1.08997 * 109.47288 * 300.00559 * 3 2 1 35 35 H 0.97007 * 119.99792 * 4.07809 * 9 7 5 36 36 H 1.08010 * 119.97093 * 359.97438 * 11 10 9 37 37 H 1.08002 * 119.92816 * 180.02562 * 12 11 10 38 38 H 1.07997 * 119.95612 * 180.02562 * 13 12 11 39 39 H 0.96999 * 119.99343 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.07442 * 180.32582 * 24 14 13 41 41 H 1.09000 * 115.54737 * 147.21677 * 25 4 3 42 42 H 1.09002 * 117.49994 * 359.97438 * 26 25 4 43 43 H 1.08997 * 117.50037 * 145.02255 * 26 25 4 44 44 H 1.09002 * 117.50097 * 252.50973 * 27 26 25 45 45 H 1.09004 * 117.51882 * 107.47283 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1784 1.4426 -1.1681 6 8 3.5758 1.3364 -2.2162 7 6 5.6662 1.5738 -1.1721 8 8 6.2683 1.6859 -0.1243 9 7 6.3401 1.5676 -2.3393 10 6 7.7368 1.6043 -2.3396 11 6 8.4512 0.9034 -3.3045 12 6 9.8321 0.9398 -3.3057 13 6 10.5077 1.6729 -2.3488 14 6 9.7999 2.3752 -1.3816 15 8 10.4646 3.0947 -0.4418 16 6 11.8016 3.1979 -0.5824 17 1 12.2832 2.8084 -1.4671 18 6 12.5581 3.8044 0.4088 19 7 11.9714 4.2785 1.4867 20 14 14.4105 3.9468 0.2144 21 1 14.7210 4.7339 -1.0061 22 1 14.9818 4.6305 1.4024 23 1 15.0012 2.5898 0.0918 24 6 8.4127 2.3413 -1.3775 25 6 4.2381 1.4422 1.2678 26 6 3.4170 1.4062 2.5583 27 6 4.1347 2.6923 2.1438 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 5.8554 1.5376 -3.1790 36 1 7.9260 0.3297 -4.0540 37 1 10.3849 0.3947 -4.0565 38 1 11.5873 1.6997 -2.3528 39 1 12.5007 4.7031 2.1799 40 1 7.8601 2.8907 -0.6297 41 1 5.1891 0.9098 1.2610 42 1 2.3314 1.3832 2.4636 43 1 3.8278 0.8499 3.4008 44 1 5.0175 2.9821 2.7136 45 1 3.5215 3.5151 1.7761 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264126173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:49 Heat of formation + Delta-G solvation = -26.510729 kcal Electronic energy + Delta-G solvation = -28129.911700 eV Core-core repulsion = 24115.045764 eV Total energy + Delta-G solvation = -4014.865936 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.10409 -39.53874 -38.44633 -37.77371 -36.57540 -34.89250 -34.20846 -32.52336 -32.26489 -29.67430 -28.68851 -27.38043 -25.37968 -24.47932 -22.75791 -22.40715 -22.31818 -21.65148 -20.91476 -19.66053 -18.36292 -17.98773 -17.11943 -16.97554 -16.05852 -15.95807 -15.59357 -15.13112 -15.04700 -14.83527 -14.55535 -14.21600 -14.18327 -13.80378 -13.60495 -13.45367 -13.16424 -12.84350 -12.57598 -12.43406 -12.16481 -11.85440 -11.75811 -11.60241 -11.57637 -11.44574 -11.10783 -11.07001 -10.99512 -10.98273 -10.83974 -10.69497 -10.48885 -9.85424 -9.54230 -9.10716 -8.83316 -8.80379 -7.78776 -7.23040 -6.44273 -4.03532 1.25093 2.05274 2.26577 2.32353 3.13442 3.13526 3.17506 3.20264 3.30635 3.71117 3.96196 4.24877 4.54395 4.58336 4.62026 4.64860 4.82171 4.87535 5.00909 5.08179 5.10531 5.27230 5.28883 5.42398 5.49048 5.59486 5.69380 5.72014 5.79167 5.80445 5.84442 5.94184 6.00618 6.06425 6.13328 6.18091 6.31954 6.56545 6.72350 6.92028 6.98282 7.04184 7.30122 7.37640 7.43518 7.66579 7.74391 8.00040 8.09342 9.00576 9.70994 10.73397 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017242 B = 0.002734 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.571414 B =10240.565433 C =11633.185411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.109 3.891 4 N -0.558 5.558 5 C 0.516 3.484 6 O -0.520 6.520 7 C 0.499 3.501 8 O -0.481 6.481 9 N -0.638 5.638 10 C 0.168 3.832 11 C -0.229 4.229 12 C -0.058 4.058 13 C -0.240 4.240 14 C 0.165 3.835 15 O -0.172 6.172 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.040 3.960 19 N -0.860 5.860 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.183 4.183 25 C 0.069 3.931 26 C -0.190 4.190 27 C -0.181 4.181 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.417 0.583 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.129 0.871 39 H 0.271 0.729 40 H 0.134 0.866 41 H 0.157 0.843 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.440 -6.790 -2.304 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C -0.012 4.012 4 N -0.290 5.290 5 C 0.299 3.701 6 O -0.396 6.396 7 C 0.280 3.720 8 O -0.354 6.354 9 N -0.284 5.284 10 C 0.075 3.925 11 C -0.250 4.250 12 C -0.077 4.077 13 C -0.260 4.260 14 C 0.111 3.889 15 O -0.075 6.075 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.204 4.204 25 C -0.035 4.035 26 C -0.228 4.228 27 C -0.219 4.219 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.254 0.746 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.147 0.853 39 H 0.081 0.919 40 H 0.152 0.848 41 H 0.174 0.826 42 H 0.116 0.884 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.384 -6.516 -1.665 19.575 hybrid contribution 0.690 0.026 -0.480 0.841 sum -17.694 -6.490 -2.145 18.968 Atomic orbital electron populations 1.21687 0.94930 1.02082 1.01929 1.21891 0.96227 0.96658 1.03074 1.21693 0.78059 0.97888 1.03594 1.47275 1.06459 1.70146 1.05075 1.20105 0.88313 0.77847 0.83853 1.90745 1.69850 1.48266 1.30781 1.20050 0.88147 0.79030 0.84734 1.90792 1.69033 1.45122 1.30499 1.43017 1.05662 1.70743 1.08968 1.17168 0.80159 0.97537 0.97598 1.20313 0.94202 1.07179 1.03313 1.20521 0.93081 0.97030 0.97097 1.21221 1.00794 1.04672 0.99338 1.19125 0.91155 0.89644 0.89023 1.84011 1.21612 1.59727 1.42152 1.21285 0.79346 1.40226 1.05949 0.89073 1.25305 1.00391 0.96267 0.94539 1.70042 1.36440 1.35374 1.07580 0.85783 0.80549 0.78904 0.78201 1.19482 1.20290 1.19479 1.20124 0.91841 1.05363 1.03116 1.22429 0.97806 1.03583 0.79665 1.23445 0.99253 1.02120 0.97970 1.23346 1.03334 0.91928 1.03335 0.92319 0.92626 0.92439 0.91260 0.91394 0.89825 0.89526 0.74625 0.87115 0.86849 0.85348 0.91943 0.84845 0.82636 0.88386 0.87638 0.87355 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.14 -1.16 6.26 -26.73 -0.17 -1.33 16 3 C 0.11 1.00 4.82 -4.04 -0.02 0.99 16 4 N -0.56 -6.59 2.80 -166.65 -0.47 -7.06 16 5 C 0.52 7.25 7.72 -11.63 -0.09 7.16 16 6 O -0.52 -7.77 16.12 5.49 0.09 -7.68 16 7 C 0.50 7.99 7.64 -11.63 -0.09 7.90 16 8 O -0.48 -8.82 10.75 5.48 0.06 -8.76 16 9 N -0.64 -9.96 5.32 -10.31 -0.05 -10.01 16 10 C 0.17 3.13 6.28 -83.78 -0.53 2.60 16 11 C -0.23 -3.92 9.97 -39.33 -0.39 -4.31 16 12 C -0.06 -1.05 10.03 -39.64 -0.40 -1.45 16 13 C -0.24 -5.19 9.12 -39.35 -0.36 -5.55 16 14 C 0.17 4.06 6.64 -39.14 -0.26 3.80 16 15 O -0.17 -4.97 9.76 0.04 0.00 -4.97 16 16 C -0.39 -10.94 9.42 30.89 0.29 -10.65 16 17 H 0.09 2.33 5.33 -52.49 -0.28 2.05 16 18 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 19 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 20 Si 0.94 20.44 29.55 -169.99 -5.02 15.42 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 C -0.18 -4.09 8.62 -39.19 -0.34 -4.43 16 25 C 0.07 0.80 5.06 -67.93 -0.34 0.46 16 26 C -0.19 -1.67 9.71 -26.73 -0.26 -1.93 16 27 C -0.18 -1.95 10.38 -26.73 -0.28 -2.22 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.62 6.15 -51.93 -0.32 0.30 16 34 H 0.09 0.85 7.51 -51.93 -0.39 0.46 16 35 H 0.42 5.43 8.30 -40.82 -0.34 5.09 16 36 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 37 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.13 2.74 5.73 -52.49 -0.30 2.44 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.13 3.13 6.29 -52.49 -0.33 2.80 16 41 H 0.16 2.14 5.95 -51.93 -0.31 1.84 16 42 H 0.10 0.72 6.22 -51.93 -0.32 0.39 16 43 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 377.40 15.07 5.69 5.69 Total: -1.00 -32.00 377.40 -7.86 -39.86 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -5.95 Total: 10.61 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -2.96 Total: -8.53 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.24 Total: -41.62 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: 0.15 Total: -21.42 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.00 -7.86 -39.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264126173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.345 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds