Wall clock time and date at job start Tue Mar 31 2020 17:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47183 * 2 1 4 4 N 1.46506 * 109.47160 * 180.02562 * 3 2 1 5 5 C 1.34773 * 119.99606 * 89.99903 * 4 3 2 6 6 O 1.21358 * 120.00320 * 354.18937 * 5 4 3 7 7 C 1.49360 * 119.99874 * 174.18112 * 5 4 3 8 8 O 1.21373 * 119.99772 * 359.68910 * 7 5 4 9 9 N 1.34775 * 120.00166 * 179.68592 * 7 5 4 10 10 C 1.39719 * 119.99849 * 184.07903 * 9 7 5 11 11 C 1.39020 * 120.04040 * 144.45721 * 10 9 7 12 12 C 1.38140 * 120.06369 * 179.97438 * 11 10 9 13 13 C 1.38182 * 120.14132 * 359.97438 * 12 11 10 14 14 C 1.38913 * 120.08342 * 0.05149 * 13 12 11 15 15 O 1.35752 * 120.03280 * 179.97438 * 14 13 12 16 16 C 1.34831 * 116.99660 * 6.56538 * 15 14 13 17 17 H 1.08002 * 120.00176 * 6.35692 * 16 15 14 18 18 C 1.38657 * 119.99951 * 186.35422 * 16 15 14 19 19 N 1.31561 * 119.99619 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00088 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46776 * 59.99995 * 20 18 16 22 22 H 1.48503 * 109.47145 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47169 * 300.00521 * 20 18 16 24 24 C 1.38758 * 119.93970 * 359.93097 * 14 13 12 25 25 C 1.46495 * 119.99996 * 270.00205 * 4 3 2 26 26 C 1.52998 * 117.50158 * 1.51012 * 25 4 3 27 27 C 1.52998 * 60.00106 * 252.50753 * 26 25 4 28 28 H 1.09005 * 109.47090 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46774 * 299.99438 * 1 2 3 30 30 H 1.08997 * 109.47464 * 59.99549 * 1 2 3 31 31 H 1.09005 * 109.47123 * 239.99883 * 2 1 3 32 32 H 1.08997 * 109.47464 * 120.00451 * 2 1 3 33 33 H 1.09002 * 109.46806 * 60.00581 * 3 2 1 34 34 H 1.08997 * 109.47288 * 300.00559 * 3 2 1 35 35 H 0.97007 * 119.99792 * 4.07809 * 9 7 5 36 36 H 1.08010 * 119.97093 * 359.97438 * 11 10 9 37 37 H 1.08002 * 119.92816 * 180.02562 * 12 11 10 38 38 H 1.07997 * 119.95612 * 180.02562 * 13 12 11 39 39 H 0.96999 * 119.99343 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.07442 * 180.32582 * 24 14 13 41 41 H 1.09000 * 115.54737 * 147.21677 * 25 4 3 42 42 H 1.09002 * 117.49994 * 359.97438 * 26 25 4 43 43 H 1.08997 * 117.50037 * 145.02255 * 26 25 4 44 44 H 1.09002 * 117.50097 * 252.50973 * 27 26 25 45 45 H 1.09004 * 117.51882 * 107.47283 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1784 1.4426 -1.1681 6 8 3.5758 1.3364 -2.2162 7 6 5.6662 1.5738 -1.1721 8 8 6.2683 1.6859 -0.1243 9 7 6.3401 1.5676 -2.3393 10 6 7.7368 1.6043 -2.3396 11 6 8.4512 0.9034 -3.3045 12 6 9.8321 0.9398 -3.3057 13 6 10.5077 1.6729 -2.3488 14 6 9.7999 2.3752 -1.3816 15 8 10.4646 3.0947 -0.4418 16 6 11.8016 3.1979 -0.5824 17 1 12.2832 2.8084 -1.4671 18 6 12.5581 3.8044 0.4088 19 7 11.9714 4.2785 1.4867 20 14 14.4105 3.9468 0.2144 21 1 14.7210 4.7339 -1.0061 22 1 14.9818 4.6305 1.4024 23 1 15.0012 2.5898 0.0918 24 6 8.4127 2.3413 -1.3775 25 6 4.2381 1.4422 1.2678 26 6 3.4170 1.4062 2.5583 27 6 4.1347 2.6923 2.1438 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 5.8554 1.5376 -3.1790 36 1 7.9260 0.3297 -4.0540 37 1 10.3849 0.3947 -4.0565 38 1 11.5873 1.6997 -2.3528 39 1 12.5007 4.7031 2.1799 40 1 7.8601 2.8907 -0.6297 41 1 5.1891 0.9098 1.2610 42 1 2.3314 1.3832 2.4636 43 1 3.8278 0.8499 3.4008 44 1 5.0175 2.9821 2.7136 45 1 3.5215 3.5151 1.7761 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264126173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:48 Heat of formation + Delta-G solvation = -46.976558 kcal Electronic energy + Delta-G solvation = -28130.799165 eV Core-core repulsion = 24115.045764 eV Total energy + Delta-G solvation = -4015.753401 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.32902 -40.96534 -39.99181 -38.80831 -38.22091 -35.77054 -35.56137 -34.26063 -33.39283 -31.31650 -30.28434 -28.26526 -27.33344 -25.69932 -23.85645 -23.54281 -23.20182 -22.98760 -22.23528 -20.85676 -20.01574 -19.25943 -18.80567 -18.15767 -17.25070 -17.12783 -16.93222 -16.78028 -16.33041 -16.03898 -15.75630 -15.68593 -15.50939 -15.36413 -14.93653 -14.53270 -14.39157 -14.25270 -13.97078 -13.58831 -13.22896 -13.08106 -13.07790 -12.82472 -12.63976 -12.56222 -12.45472 -12.37677 -12.34440 -12.15815 -11.88814 -11.70460 -11.63072 -11.40588 -11.27923 -10.76072 -10.43306 -9.75078 -9.41204 -8.93905 -8.46069 -6.15378 -0.05006 0.58188 0.68752 1.09632 1.35946 1.47209 1.52770 1.94516 2.13413 2.22080 2.80051 2.84403 3.02821 3.16474 3.53817 3.73599 3.88700 3.90837 4.02168 4.07740 4.11378 4.34521 4.34875 4.38273 4.45665 4.56539 4.60285 4.69409 4.72602 4.83902 4.87491 4.96687 5.01584 5.10608 5.11089 5.15748 5.18016 5.22169 5.31046 5.36402 5.43938 5.60454 5.71204 5.84034 6.01899 6.07537 6.14669 6.54569 6.80948 6.97724 7.78839 8.77183 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017242 B = 0.002734 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.571414 B =10240.565433 C =11633.185411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C 0.105 3.895 4 N -0.547 5.547 5 C 0.518 3.482 6 O -0.530 6.530 7 C 0.495 3.505 8 O -0.509 6.509 9 N -0.629 5.629 10 C 0.175 3.825 11 C -0.200 4.200 12 C -0.048 4.048 13 C -0.248 4.248 14 C 0.128 3.872 15 O -0.231 6.231 16 C -0.413 4.413 17 H 0.106 0.894 18 C -0.025 4.025 19 N -0.922 5.922 20 Si 1.021 2.979 21 H -0.256 1.256 22 H -0.274 1.274 23 H -0.255 1.255 24 C -0.204 4.204 25 C 0.044 3.956 26 C -0.154 4.154 27 C -0.190 4.190 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.432 0.568 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.126 0.874 39 H 0.272 0.728 40 H 0.107 0.893 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.117 0.883 44 H 0.092 0.908 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.892 -8.708 -4.263 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.173 4.173 3 C -0.016 4.016 4 N -0.278 5.278 5 C 0.300 3.700 6 O -0.408 6.408 7 C 0.277 3.723 8 O -0.383 6.383 9 N -0.277 5.277 10 C 0.081 3.919 11 C -0.221 4.221 12 C -0.066 4.066 13 C -0.268 4.268 14 C 0.077 3.923 15 O -0.137 6.137 16 C -0.489 4.489 17 H 0.123 0.877 18 C -0.222 4.222 19 N -0.560 5.560 20 Si 0.840 3.160 21 H -0.180 1.180 22 H -0.198 1.198 23 H -0.179 1.179 24 C -0.225 4.225 25 C -0.059 4.059 26 C -0.191 4.191 27 C -0.229 4.229 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.272 0.728 36 H 0.178 0.822 37 H 0.179 0.821 38 H 0.144 0.856 39 H 0.081 0.919 40 H 0.125 0.875 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.135 0.865 44 H 0.111 0.889 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.909 -8.468 -3.671 21.944 hybrid contribution 0.854 0.468 -0.022 0.974 sum -19.055 -8.001 -3.693 20.994 Atomic orbital electron populations 1.21667 0.93170 1.02715 1.02668 1.21837 0.97637 0.95535 1.02278 1.21970 0.76021 0.98937 1.04625 1.47346 1.07582 1.68519 1.04317 1.19673 0.87119 0.78571 0.84591 1.90739 1.69526 1.49439 1.31104 1.20587 0.89298 0.78083 0.84311 1.90814 1.69957 1.45986 1.31573 1.42961 1.04506 1.70440 1.09801 1.17286 0.81611 0.96306 0.96659 1.20904 0.94113 1.04663 1.02381 1.21031 0.93660 0.95486 0.96410 1.21383 1.00883 1.04970 0.99550 1.19628 0.92069 0.90953 0.89696 1.83973 1.22299 1.62744 1.44707 1.21834 0.79582 1.40631 1.06855 0.87686 1.26668 1.06125 0.95560 0.93875 1.70209 1.38732 1.37917 1.09136 0.84620 0.73174 0.79612 0.78617 1.17991 1.19830 1.17923 1.20119 0.91346 1.06821 1.04219 1.22294 0.98207 1.04624 0.80809 1.23547 1.00222 0.99509 0.95858 1.23340 1.03540 0.92660 1.03337 0.91777 0.91073 0.92535 0.93308 0.90972 0.87365 0.89919 0.72769 0.82230 0.82098 0.85621 0.91870 0.87460 0.85280 0.85862 0.86509 0.88950 0.88104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.91 71.98 0.71 -0.74 16 2 C -0.13 -1.95 6.26 30.59 0.19 -1.76 16 3 C 0.10 1.72 4.82 86.38 0.42 2.13 16 4 N -0.55 -12.56 2.80 -799.51 -2.24 -14.80 16 5 C 0.52 14.42 7.72 87.24 0.67 15.09 16 6 O -0.53 -15.31 16.12 -3.27 -0.05 -15.36 16 7 C 0.49 16.11 7.64 87.24 0.67 16.77 16 8 O -0.51 -19.77 10.75 -3.32 -0.04 -19.80 16 9 N -0.63 -19.08 5.32 -304.89 -1.62 -20.71 16 10 C 0.18 6.37 6.28 38.20 0.24 6.61 16 11 C -0.20 -6.08 9.97 22.43 0.22 -5.86 16 12 C -0.05 -1.54 10.03 22.23 0.22 -1.32 16 13 C -0.25 -10.68 9.12 22.42 0.20 -10.47 16 14 C 0.13 6.61 6.64 22.56 0.15 6.76 16 15 O -0.23 -14.37 9.76 -22.78 -0.22 -14.59 16 16 C -0.41 -24.34 9.42 67.92 0.64 -23.70 16 17 H 0.11 5.57 5.33 -2.91 -0.02 5.56 16 18 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 19 N -0.92 -57.81 13.67 21.61 0.30 -57.52 16 20 Si 1.02 43.07 29.55 68.60 2.03 45.09 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 23 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 24 C -0.20 -9.54 8.62 22.52 0.19 -9.34 16 25 C 0.04 1.04 5.06 44.99 0.23 1.27 16 26 C -0.15 -2.42 9.71 30.59 0.30 -2.12 16 27 C -0.19 -4.10 10.38 30.59 0.32 -3.78 16 28 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.11 1.25 6.15 -2.39 -0.01 1.24 16 34 H 0.08 1.47 7.51 -2.39 -0.02 1.45 16 35 H 0.43 10.35 8.30 -92.70 -0.77 9.58 16 36 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 37 H 0.16 3.78 8.06 -2.91 -0.02 3.75 16 38 H 0.13 5.40 5.73 -2.91 -0.02 5.38 16 39 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 40 H 0.11 5.51 6.29 -2.91 -0.02 5.49 16 41 H 0.13 3.78 5.95 -2.39 -0.01 3.77 16 42 H 0.12 1.33 6.22 -2.39 -0.01 1.32 16 43 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -77.31 377.40 4.26 -73.05 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: 0.27 Total: 36.06 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 5.84 Total: -11.43 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -3.56 Total: -93.02 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -0.31 Total: -49.76 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -77.31 4.26 -73.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264126173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.073 kcal (2) G-P(sol) polarization free energy of solvation -77.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds