Wall clock time and date at job start Tue Mar 31 2020 17:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47021 * 2 1 4 4 N 1.46499 * 109.47056 * 240.00306 * 2 1 3 5 5 C 1.46763 * 124.34930 * 239.72125 * 4 2 1 6 6 C 1.54655 * 105.38323 * 162.85386 * 5 4 2 7 7 H 1.09000 * 111.22271 * 267.58255 * 6 5 4 8 8 N 1.46504 * 110.82158 * 143.77800 * 6 5 4 9 9 C 1.34774 * 119.99928 * 161.34799 * 8 6 5 10 10 O 1.21591 * 119.99866 * 0.02562 * 9 8 6 11 11 C 1.47537 * 119.99495 * 180.02562 * 9 8 6 12 12 C 1.39664 * 120.20151 * 0.02562 * 11 9 8 13 13 C 1.37823 * 119.91675 * 179.97438 * 12 11 9 14 14 C 1.38570 * 120.32605 * 359.97433 * 13 12 11 15 15 C 1.38024 * 120.40168 * 0.02622 * 14 13 12 16 16 C 1.38827 * 120.07315 * 359.73885 * 15 14 13 17 17 O 1.35521 * 120.16294 * 180.27633 * 16 15 14 18 18 C 1.34810 * 116.99772 * 354.40042 * 17 16 15 19 19 H 1.08000 * 120.00362 * 5.06891 * 18 17 16 20 20 C 1.38708 * 119.99956 * 185.06247 * 18 17 16 21 21 N 1.31518 * 119.99563 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99920 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47279 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46856 * 120.00441 * 22 20 18 25 25 H 1.48500 * 109.47005 * 240.00085 * 22 20 18 26 26 C 1.54625 * 101.68422 * 25.77177 * 6 5 4 27 27 C 1.34416 * 124.35125 * 60.02605 * 4 2 1 28 28 O 1.21281 * 124.94011 * 0.42758 * 27 4 2 29 29 H 1.08999 * 109.47044 * 300.00194 * 1 2 3 30 30 H 1.09006 * 109.47219 * 59.99599 * 1 2 3 31 31 H 1.08993 * 109.46933 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47202 * 119.99837 * 2 1 3 33 33 H 1.09007 * 109.46766 * 60.00152 * 3 2 1 34 34 H 1.08992 * 109.47273 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47450 * 300.00247 * 3 2 1 36 36 H 1.09004 * 110.24555 * 281.99143 * 5 4 2 37 37 H 1.09005 * 110.24008 * 43.98540 * 5 4 2 38 38 H 0.96998 * 119.99928 * 341.35400 * 8 6 5 39 39 H 1.07996 * 120.03580 * 359.95663 * 12 11 9 40 40 H 1.08006 * 119.83489 * 179.97438 * 13 12 11 41 41 H 1.08004 * 119.79438 * 180.02562 * 14 13 12 42 42 H 1.08005 * 119.95912 * 179.97438 * 15 14 13 43 43 H 0.97003 * 119.99498 * 179.97438 * 21 20 18 44 44 H 1.09005 * 110.48870 * 216.30989 * 26 6 5 45 45 H 1.09001 * 110.60050 * 93.71605 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.8704 -1.8853 -1.1728 6 6 2.7606 -2.4953 -2.5898 7 1 1.9673 -3.2413 -2.6378 8 7 4.0415 -3.0681 -3.0109 9 6 4.0812 -3.9618 -4.0188 10 8 3.0539 -4.2924 -4.5790 11 6 5.3712 -4.5391 -4.4425 12 6 6.5536 -4.1627 -3.8015 13 6 7.7554 -4.7060 -4.2016 14 6 7.7972 -5.6254 -5.2375 15 6 6.6368 -6.0068 -5.8802 16 6 5.4166 -5.4737 -5.4875 17 8 4.2755 -5.8511 -6.1136 18 6 4.4038 -6.6587 -7.1854 19 1 5.3757 -7.0415 -7.4599 20 6 3.2876 -6.9981 -7.9356 21 7 2.1042 -6.5316 -7.6016 22 14 3.4654 -8.1176 -9.4204 23 1 4.8902 -8.5036 -9.5815 24 1 2.6419 -9.3373 -9.2219 25 1 3.0051 -7.4022 -10.6376 26 6 2.4042 -1.2530 -3.4387 27 6 1.7484 -0.3079 -2.4562 28 8 1.0772 0.6551 -2.7609 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8901 34 1 3.1299 1.4426 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 3.9024 -1.6085 -0.9572 37 1 2.5059 -2.5939 -0.4291 38 1 4.8611 -2.8041 -2.5641 39 1 6.5262 -3.4466 -2.9936 40 1 8.6690 -4.4136 -3.7053 41 1 8.7437 -6.0460 -5.5438 42 1 6.6778 -6.7236 -6.6871 43 1 1.3237 -6.7687 -8.1265 44 1 1.7076 -1.5209 -4.2332 45 1 3.3046 -0.8035 -3.8575 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265629302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:34 Heat of formation + Delta-G solvation = -86.552739 kcal Electronic energy + Delta-G solvation = -28337.642180 eV Core-core repulsion = 24320.172627 eV Total energy + Delta-G solvation = -4017.469553 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.87538 -41.09766 -39.74174 -38.01047 -37.64640 -36.46493 -34.35484 -34.18112 -32.07408 -30.53947 -30.22173 -28.43652 -28.10955 -27.33132 -24.85641 -23.48773 -23.33966 -22.43911 -21.56113 -19.93674 -19.82205 -19.25853 -18.00644 -17.81053 -17.45199 -16.82934 -16.38728 -16.16349 -16.02878 -15.82284 -15.51425 -15.34873 -15.18529 -15.00158 -14.72961 -14.63588 -14.43230 -14.28010 -14.13536 -13.70846 -13.53614 -13.08786 -13.01955 -12.98217 -12.80577 -12.66795 -12.52814 -12.37911 -12.28324 -12.19100 -12.11448 -12.08617 -11.40826 -10.90550 -10.82977 -10.58977 -10.11637 -9.78211 -9.75609 -9.00500 -8.43673 -6.13905 0.15568 0.76595 1.32921 1.43137 1.46017 1.52175 1.82041 2.10418 2.16156 2.23870 2.89465 3.23725 3.29267 3.45936 3.51033 3.74347 3.93617 4.00848 4.03771 4.11104 4.13199 4.31029 4.32390 4.49197 4.54081 4.56281 4.66068 4.72426 4.73644 4.82296 4.85962 4.88627 4.92467 5.02052 5.10142 5.17607 5.23947 5.31922 5.49680 5.51329 5.64108 5.65868 5.74007 5.97570 6.04205 6.20705 6.69283 6.96440 7.08174 7.49781 7.82253 8.76760 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014659 B = 0.002947 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.645934 B = 9499.882036 C =11014.770405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.147 3.853 3 C -0.163 4.163 4 N -0.608 5.608 5 C 0.111 3.889 6 C 0.143 3.857 7 H 0.083 0.917 8 N -0.703 5.703 9 C 0.554 3.446 10 O -0.563 6.563 11 C -0.243 4.243 12 C -0.026 4.026 13 C -0.201 4.201 14 C -0.041 4.041 15 C -0.260 4.260 16 C 0.148 3.852 17 O -0.188 6.188 18 C -0.425 4.425 19 H 0.106 0.894 20 C -0.022 4.022 21 N -0.904 5.904 22 Si 1.019 2.981 23 H -0.246 1.246 24 H -0.269 1.269 25 H -0.271 1.271 26 C -0.171 4.171 27 C 0.523 3.477 28 O -0.568 6.568 29 H 0.090 0.910 30 H 0.036 0.964 31 H 0.056 0.944 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.037 0.963 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.417 0.583 39 H 0.168 0.832 40 H 0.164 0.836 41 H 0.150 0.850 42 H 0.120 0.880 43 H 0.270 0.730 44 H 0.074 0.926 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.704 9.730 18.733 23.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.046 3.954 3 C -0.221 4.221 4 N -0.342 5.342 5 C -0.012 4.012 6 C 0.037 3.963 7 H 0.101 0.899 8 N -0.360 5.360 9 C 0.344 3.656 10 O -0.441 6.441 11 C -0.248 4.248 12 C -0.044 4.044 13 C -0.219 4.219 14 C -0.060 4.060 15 C -0.279 4.279 16 C 0.093 3.907 17 O -0.091 6.091 18 C -0.501 4.501 19 H 0.123 0.877 20 C -0.221 4.221 21 N -0.540 5.540 22 Si 0.838 3.162 23 H -0.169 1.169 24 H -0.194 1.194 25 H -0.196 1.196 26 C -0.212 4.212 27 C 0.311 3.689 28 O -0.448 6.448 29 H 0.109 0.891 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.146 0.854 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.257 0.743 39 H 0.185 0.815 40 H 0.182 0.818 41 H 0.168 0.832 42 H 0.137 0.863 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.120 10.059 18.254 22.368 hybrid contribution -0.366 -0.540 -1.286 1.442 sum 7.754 9.520 16.967 20.944 Atomic orbital electron populations 1.22185 0.95402 1.02263 1.02722 1.21255 0.94066 0.93512 0.86576 1.22147 1.01716 0.95560 1.02684 1.48537 1.50588 1.29339 1.05709 1.22473 0.97273 0.86321 0.95136 1.21582 0.87447 0.93470 0.93832 0.89922 1.45438 1.09652 1.44475 1.36410 1.18485 0.88795 0.78725 0.79629 1.90963 1.36596 1.61258 1.55239 1.19261 0.94804 1.06414 1.04283 1.21346 0.89769 0.96591 0.96722 1.21189 0.98653 1.01444 1.00646 1.21428 0.96961 0.94262 0.93301 1.21289 0.92684 1.07496 1.06458 1.20116 0.87268 0.91649 0.91645 1.84170 1.27469 1.58154 1.39308 1.22033 0.96937 1.26434 1.04647 0.87684 1.26703 0.93678 0.99626 1.02105 1.70320 0.99726 1.43747 1.40210 0.84536 0.79821 0.76642 0.75184 1.16862 1.19405 1.19609 1.22810 1.03103 0.96558 0.98767 1.20797 0.79167 0.84229 0.84753 1.90661 1.41331 1.30510 1.82266 0.89131 0.94440 0.92493 0.85431 0.89341 0.91575 0.94378 0.86745 0.86727 0.74280 0.81507 0.81830 0.83196 0.86253 0.92137 0.90690 0.86828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 9.20 71.98 0.66 -2.20 16 2 C 0.15 2.12 3.48 44.99 0.16 2.27 16 3 C -0.16 -2.42 9.20 71.98 0.66 -1.76 16 4 N -0.61 -11.46 2.83 -793.67 -2.25 -13.70 16 5 C 0.11 1.52 7.02 86.89 0.61 2.12 16 6 C 0.14 3.53 3.44 46.11 0.16 3.69 16 7 H 0.08 2.56 7.72 -2.39 -0.02 2.54 16 8 N -0.70 -18.16 5.13 -440.40 -2.26 -20.42 16 9 C 0.55 22.74 7.76 86.70 0.67 23.41 16 10 O -0.56 -31.25 14.91 16.89 0.25 -31.00 16 11 C -0.24 -9.70 5.89 -19.98 -0.12 -9.81 16 12 C -0.03 -0.68 9.54 22.52 0.21 -0.47 16 13 C -0.20 -4.81 10.02 22.25 0.22 -4.58 16 14 C -0.04 -1.21 10.03 22.30 0.22 -0.99 16 15 C -0.26 -10.72 9.16 22.36 0.20 -10.52 16 16 C 0.15 7.34 6.66 22.91 0.15 7.49 16 17 O -0.19 -11.70 7.84 0.87 0.01 -11.69 16 18 C -0.42 -25.34 9.49 67.93 0.64 -24.69 16 19 H 0.11 5.64 5.21 -2.91 -0.02 5.63 16 20 C -0.02 -1.29 5.49 84.85 0.47 -0.82 16 21 N -0.90 -58.76 13.67 21.62 0.30 -58.46 16 22 Si 1.02 44.13 29.55 68.60 2.03 46.16 16 23 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 26 C -0.17 -4.89 6.58 30.59 0.20 -4.69 16 27 C 0.52 14.59 7.41 87.90 0.65 15.24 16 28 O -0.57 -20.19 15.12 -3.03 -0.05 -20.24 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 0.91 6.80 -2.38 -0.02 0.90 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.13 0.93 8.07 -2.39 -0.02 0.91 16 33 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.04 0.85 6.77 -2.39 -0.02 0.83 16 36 H 0.11 0.82 7.78 -2.38 -0.02 0.80 16 37 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.42 6.62 6.39 -92.71 -0.59 6.03 16 39 H 0.17 2.48 6.40 -2.91 -0.02 2.46 16 40 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 41 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 42 H 0.12 5.08 5.64 -2.91 -0.02 5.06 16 43 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 44 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 45 H 0.11 3.03 8.08 -2.39 -0.02 3.01 16 Total: -1.00 -93.46 372.87 4.25 -89.21 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 0.44 Total: 26.46 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 5.79 Total: -6.30 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -4.21 Total: -92.59 kcal Atomic # 8 Polarization: -63.14 SS G_CDS: 0.21 Total: -62.93 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -93.46 4.25 -89.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265629302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.653 kcal (2) G-P(sol) polarization free energy of solvation -93.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds