Wall clock time and date at job start Tue Mar 31 2020 17:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47103 * 2 1 4 4 N 1.46501 * 109.47385 * 119.99901 * 2 1 3 5 5 C 1.46759 * 124.35259 * 120.00252 * 4 2 1 6 6 C 1.54476 * 105.54974 * 197.07972 * 5 4 2 7 7 H 1.08998 * 110.97032 * 92.69936 * 6 5 4 8 8 N 1.46505 * 110.96664 * 216.42001 * 6 5 4 9 9 C 1.34771 * 120.00036 * 204.99966 * 8 6 5 10 10 O 1.21595 * 120.00232 * 0.02562 * 9 8 6 11 11 C 1.47540 * 120.00181 * 179.97438 * 9 8 6 12 12 C 1.39660 * 120.19533 * 359.97438 * 11 9 8 13 13 C 1.37826 * 119.91826 * 179.97438 * 12 11 9 14 14 C 1.38576 * 120.32654 * 0.02562 * 13 12 11 15 15 C 1.38023 * 120.39933 * 0.02562 * 14 13 12 16 16 C 1.38841 * 120.07099 * 359.67718 * 15 14 13 17 17 O 1.35513 * 120.16345 * 180.29511 * 16 15 14 18 18 C 1.34818 * 117.00147 * 354.40380 * 17 16 15 19 19 H 1.08000 * 119.99775 * 5.06696 * 18 17 16 20 20 C 1.38695 * 120.00535 * 185.06077 * 18 17 16 21 21 N 1.31519 * 119.99615 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00235 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46739 * 60.00255 * 22 20 18 24 24 H 1.48505 * 109.46876 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47105 * 300.00102 * 22 20 18 26 26 C 1.54628 * 101.76672 * 334.53526 * 6 5 4 27 27 C 1.34628 * 124.46434 * 300.02495 * 4 2 1 28 28 O 1.21277 * 124.91002 * 359.55586 * 27 4 2 29 29 H 1.09001 * 109.46834 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47209 * 299.99659 * 1 2 3 31 31 H 1.08998 * 109.47474 * 59.99871 * 1 2 3 32 32 H 1.09000 * 109.47209 * 240.00341 * 2 1 3 33 33 H 1.08993 * 109.47706 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47062 * 300.00382 * 3 2 1 35 35 H 1.09000 * 109.47150 * 59.99673 * 3 2 1 36 36 H 1.09000 * 110.24523 * 78.02642 * 5 4 2 37 37 H 1.08999 * 110.24182 * 316.12274 * 5 4 2 38 38 H 0.96996 * 119.99920 * 24.99942 * 8 6 5 39 39 H 1.07999 * 120.04139 * 359.97438 * 12 11 9 40 40 H 1.08004 * 119.83551 * 180.02562 * 13 12 11 41 41 H 1.07999 * 119.80066 * 180.02562 * 14 13 12 42 42 H 1.07993 * 119.96720 * 179.97438 * 15 14 13 43 43 H 0.96999 * 120.00234 * 180.02562 * 21 20 18 44 44 H 1.08996 * 110.48553 * 143.47546 * 26 6 5 45 45 H 1.08995 * 110.48684 * 266.12398 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8657 -1.8887 1.1728 6 6 2.7610 -2.4976 2.5886 7 1 1.9679 -3.2440 2.6346 8 7 4.0420 -3.0711 3.0087 9 6 4.0702 -4.0564 3.9278 10 8 3.0324 -4.4696 4.4082 11 6 5.3602 -4.6344 4.3504 12 6 6.5545 -4.1640 3.8002 13 6 7.7564 -4.7077 4.1995 14 6 7.7866 -5.7204 5.1449 15 6 6.6142 -6.1960 5.6966 16 6 5.3946 -5.6560 5.3109 17 8 4.2428 -6.1175 5.8557 18 6 4.3383 -7.1802 6.6799 19 1 5.3089 -7.5731 6.9442 20 6 3.1900 -7.7688 7.1885 21 7 2.0080 -7.2905 6.8664 22 14 3.3224 -9.2407 8.3310 23 1 4.0964 -8.8607 9.5401 24 1 1.9616 -9.6794 8.7327 25 1 4.0141 -10.3515 7.6291 26 6 2.4045 -1.2569 3.4399 27 6 1.7487 -0.3100 2.4591 28 8 1.0772 0.6522 2.7656 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 3.8983 -1.6162 0.9546 37 1 2.4979 -2.5962 0.4297 38 1 4.8698 -2.7418 2.6252 39 1 6.5364 -3.3752 3.0628 40 1 8.6793 -4.3426 3.7735 41 1 8.7332 -6.1400 5.4520 42 1 6.6458 -6.9858 6.4325 43 1 1.2049 -7.7019 7.2223 44 1 1.7080 -1.5263 4.2338 45 1 3.3061 -0.8091 3.8577 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265629303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:39 Heat of formation + Delta-G solvation = -61.825974 kcal Electronic energy + Delta-G solvation = -28308.634746 eV Core-core repulsion = 24292.237426 eV Total energy + Delta-G solvation = -4016.397320 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.78072 -39.56589 -38.17051 -36.52805 -36.36904 -35.43495 -32.97866 -32.37450 -30.70211 -29.16064 -28.94767 -27.42047 -27.38947 -25.42198 -23.46338 -22.61458 -21.93635 -21.10688 -20.12726 -18.94789 -18.09492 -17.71846 -16.86744 -16.59840 -16.14321 -15.69209 -14.90370 -14.66266 -14.55396 -14.28825 -14.18954 -14.10171 -13.87092 -13.79687 -13.74645 -13.57393 -13.08583 -12.82606 -12.74642 -12.54377 -12.31728 -12.19488 -11.81981 -11.74869 -11.50244 -11.42843 -11.31976 -11.24096 -11.13086 -10.91948 -10.83904 -10.50532 -9.80337 -9.62733 -8.96926 -8.90958 -8.87864 -8.73655 -8.33347 -7.36157 -6.48134 -4.08208 1.64984 2.27221 2.54119 2.72959 3.09849 3.11645 3.14423 3.45968 3.62927 3.90661 4.28478 4.37520 4.57889 4.73567 4.79994 4.86444 4.95256 4.97777 5.02581 5.13033 5.24711 5.37562 5.39146 5.42505 5.45761 5.47545 5.56738 5.64337 5.66612 5.88550 5.91364 5.98642 6.04173 6.06642 6.07701 6.46744 6.50909 6.62591 6.76329 6.85866 6.98861 7.01113 7.18903 7.24821 7.64337 7.86189 7.97924 8.10919 8.90911 8.97371 9.62450 10.65371 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014840 B = 0.002910 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.288029 B = 9621.055185 C =11081.767848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.153 3.847 3 C -0.167 4.167 4 N -0.618 5.618 5 C 0.098 3.902 6 C 0.143 3.857 7 H 0.113 0.887 8 N -0.735 5.735 9 C 0.558 3.442 10 O -0.495 6.495 11 C -0.229 4.229 12 C -0.037 4.037 13 C -0.231 4.231 14 C -0.050 4.050 15 C -0.237 4.237 16 C 0.189 3.811 17 O -0.122 6.122 18 C -0.404 4.404 19 H 0.094 0.906 20 C 0.046 3.954 21 N -0.831 5.831 22 Si 0.941 3.059 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.268 1.268 26 C -0.171 4.171 27 C 0.525 3.475 28 O -0.529 6.529 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.394 0.606 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.132 0.868 43 H 0.272 0.728 44 H 0.109 0.891 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.103 10.312 -13.475 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.051 3.949 3 C -0.225 4.225 4 N -0.354 5.354 5 C -0.026 4.026 6 C 0.037 3.963 7 H 0.131 0.869 8 N -0.391 5.391 9 C 0.348 3.652 10 O -0.369 6.369 11 C -0.234 4.234 12 C -0.056 4.056 13 C -0.250 4.250 14 C -0.069 4.069 15 C -0.256 4.256 16 C 0.129 3.871 17 O -0.020 6.020 18 C -0.480 4.480 19 H 0.111 0.889 20 C -0.163 4.163 21 N -0.462 5.462 22 Si 0.765 3.235 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.193 1.193 26 C -0.212 4.212 27 C 0.313 3.687 28 O -0.405 6.405 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.230 0.770 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.149 0.851 43 H 0.083 0.917 44 H 0.127 0.873 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.380 10.533 -12.957 17.037 hybrid contribution 0.753 -0.631 0.320 1.033 sum 4.133 9.902 -12.637 16.578 Atomic orbital electron populations 1.22194 0.94674 1.02582 1.03245 1.20932 0.94532 0.93043 0.86414 1.22182 1.01209 0.95859 1.03279 1.48498 1.51495 1.29170 1.06244 1.22323 0.95350 0.86752 0.98142 1.21560 0.88986 0.94719 0.91076 0.86892 1.45827 1.07424 1.40228 1.45600 1.18262 0.89694 0.78645 0.78650 1.90967 1.33713 1.59100 1.53071 1.18763 0.92535 1.05680 1.06409 1.20740 0.91565 0.96784 0.96526 1.20462 0.96851 1.03002 1.04710 1.20907 0.97002 0.94588 0.94353 1.21165 0.91863 1.05971 1.06637 1.19266 0.87023 0.91181 0.89616 1.84162 1.25368 1.41191 1.51306 1.21452 0.94820 1.06826 1.24908 0.88891 1.25381 0.94173 0.98785 0.97912 1.70109 0.97565 1.38633 1.39938 0.85799 0.78116 0.79972 0.79656 1.19348 1.20133 1.19348 1.22900 1.03476 0.95759 0.99074 1.20941 0.79385 0.84792 0.83545 1.90677 1.39502 1.28953 1.81404 0.92306 0.90947 0.91551 0.89471 0.92529 0.91551 0.90953 0.90716 0.89597 0.77012 0.87059 0.87273 0.87178 0.85066 0.91743 0.87281 0.87435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 9.20 37.16 0.34 -1.22 16 2 C 0.15 1.35 3.48 -67.93 -0.24 1.11 16 3 C -0.17 -1.45 9.20 37.16 0.34 -1.11 16 4 N -0.62 -6.51 2.83 -164.79 -0.47 -6.98 16 5 C 0.10 0.88 7.02 -3.13 -0.02 0.86 16 6 C 0.14 1.81 3.53 -66.30 -0.23 1.57 16 7 H 0.11 1.69 7.54 -51.93 -0.39 1.29 16 8 N -0.73 -10.16 5.10 -53.26 -0.27 -10.43 16 9 C 0.56 11.20 7.76 -12.47 -0.10 11.10 16 10 O -0.50 -12.68 14.81 -16.57 -0.25 -12.92 16 11 C -0.23 -4.64 5.89 -104.81 -0.62 -5.26 16 12 C -0.04 -0.59 9.53 -39.20 -0.37 -0.96 16 13 C -0.23 -3.55 10.02 -39.61 -0.40 -3.95 16 14 C -0.05 -0.84 10.03 -39.54 -0.40 -1.24 16 15 C -0.24 -4.90 9.16 -39.44 -0.36 -5.26 16 16 C 0.19 4.50 6.66 -38.59 -0.26 4.24 16 17 O -0.12 -3.50 7.84 -21.05 -0.16 -3.66 16 18 C -0.40 -11.17 9.49 30.90 0.29 -10.87 16 19 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 20 C 0.05 1.25 5.49 -17.52 -0.10 1.15 16 21 N -0.83 -24.59 13.67 55.48 0.76 -23.83 16 22 Si 0.94 20.15 29.55 -169.99 -5.02 15.12 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 C -0.17 -2.26 6.59 -26.74 -0.18 -2.43 16 27 C 0.53 7.11 7.42 -10.76 -0.08 7.03 16 28 O -0.53 -8.79 15.15 5.56 0.08 -8.71 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.86 6.81 -51.93 -0.35 0.51 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.58 8.07 -51.93 -0.42 0.16 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.82 6.79 -51.93 -0.35 0.46 16 36 H 0.07 0.53 7.80 -51.93 -0.40 0.13 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.39 4.13 6.46 -40.82 -0.26 3.86 16 39 H 0.11 1.27 6.40 -52.49 -0.34 0.94 16 40 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 41 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 42 H 0.13 2.68 5.64 -52.49 -0.30 2.39 16 43 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 45 H 0.11 1.34 8.08 -51.93 -0.42 0.92 16 LS Contribution 372.81 15.07 5.62 5.62 Total: -1.00 -35.15 372.81 -8.11 -43.26 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.03 Total: 7.76 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -2.37 Total: -5.22 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.02 Total: -41.25 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.33 Total: -25.30 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.15 -8.11 -43.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265629303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.569 kcal (2) G-P(sol) polarization free energy of solvation -35.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds