Wall clock time and date at job start Tue Mar 31 2020 17:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47103 * 2 1 4 4 N 1.46501 * 109.47385 * 119.99901 * 2 1 3 5 5 C 1.46759 * 124.35259 * 120.00252 * 4 2 1 6 6 C 1.54476 * 105.54974 * 197.07972 * 5 4 2 7 7 H 1.08998 * 110.97032 * 92.69936 * 6 5 4 8 8 N 1.46505 * 110.96664 * 216.42001 * 6 5 4 9 9 C 1.34771 * 120.00036 * 204.99966 * 8 6 5 10 10 O 1.21595 * 120.00232 * 0.02562 * 9 8 6 11 11 C 1.47540 * 120.00181 * 179.97438 * 9 8 6 12 12 C 1.39660 * 120.19533 * 359.97438 * 11 9 8 13 13 C 1.37826 * 119.91826 * 179.97438 * 12 11 9 14 14 C 1.38576 * 120.32654 * 0.02562 * 13 12 11 15 15 C 1.38023 * 120.39933 * 0.02562 * 14 13 12 16 16 C 1.38841 * 120.07099 * 359.67718 * 15 14 13 17 17 O 1.35513 * 120.16345 * 180.29511 * 16 15 14 18 18 C 1.34818 * 117.00147 * 354.40380 * 17 16 15 19 19 H 1.08000 * 119.99775 * 5.06696 * 18 17 16 20 20 C 1.38695 * 120.00535 * 185.06077 * 18 17 16 21 21 N 1.31519 * 119.99615 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00235 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46739 * 60.00255 * 22 20 18 24 24 H 1.48505 * 109.46876 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47105 * 300.00102 * 22 20 18 26 26 C 1.54628 * 101.76672 * 334.53526 * 6 5 4 27 27 C 1.34628 * 124.46434 * 300.02495 * 4 2 1 28 28 O 1.21277 * 124.91002 * 359.55586 * 27 4 2 29 29 H 1.09001 * 109.46834 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47209 * 299.99659 * 1 2 3 31 31 H 1.08998 * 109.47474 * 59.99871 * 1 2 3 32 32 H 1.09000 * 109.47209 * 240.00341 * 2 1 3 33 33 H 1.08993 * 109.47706 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47062 * 300.00382 * 3 2 1 35 35 H 1.09000 * 109.47150 * 59.99673 * 3 2 1 36 36 H 1.09000 * 110.24523 * 78.02642 * 5 4 2 37 37 H 1.08999 * 110.24182 * 316.12274 * 5 4 2 38 38 H 0.96996 * 119.99920 * 24.99942 * 8 6 5 39 39 H 1.07999 * 120.04139 * 359.97438 * 12 11 9 40 40 H 1.08004 * 119.83551 * 180.02562 * 13 12 11 41 41 H 1.07999 * 119.80066 * 180.02562 * 14 13 12 42 42 H 1.07993 * 119.96720 * 179.97438 * 15 14 13 43 43 H 0.96999 * 120.00234 * 180.02562 * 21 20 18 44 44 H 1.08996 * 110.48553 * 143.47546 * 26 6 5 45 45 H 1.08995 * 110.48684 * 266.12398 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8657 -1.8887 1.1728 6 6 2.7610 -2.4976 2.5886 7 1 1.9679 -3.2440 2.6346 8 7 4.0420 -3.0711 3.0087 9 6 4.0702 -4.0564 3.9278 10 8 3.0324 -4.4696 4.4082 11 6 5.3602 -4.6344 4.3504 12 6 6.5545 -4.1640 3.8002 13 6 7.7564 -4.7077 4.1995 14 6 7.7866 -5.7204 5.1449 15 6 6.6142 -6.1960 5.6966 16 6 5.3946 -5.6560 5.3109 17 8 4.2428 -6.1175 5.8557 18 6 4.3383 -7.1802 6.6799 19 1 5.3089 -7.5731 6.9442 20 6 3.1900 -7.7688 7.1885 21 7 2.0080 -7.2905 6.8664 22 14 3.3224 -9.2407 8.3310 23 1 4.0964 -8.8607 9.5401 24 1 1.9616 -9.6794 8.7327 25 1 4.0141 -10.3515 7.6291 26 6 2.4045 -1.2569 3.4399 27 6 1.7487 -0.3100 2.4591 28 8 1.0772 0.6522 2.7656 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 3.8983 -1.6162 0.9546 37 1 2.4979 -2.5962 0.4297 38 1 4.8698 -2.7418 2.6252 39 1 6.5364 -3.3752 3.0628 40 1 8.6793 -4.3426 3.7735 41 1 8.7332 -6.1400 5.4520 42 1 6.6458 -6.9858 6.4325 43 1 1.2049 -7.7019 7.2223 44 1 1.7080 -1.5263 4.2338 45 1 3.3061 -0.8091 3.8577 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265629303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:38 Heat of formation + Delta-G solvation = -86.714169 kcal Electronic energy + Delta-G solvation = -28309.713979 eV Core-core repulsion = 24292.237426 eV Total energy + Delta-G solvation = -4017.476553 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.85930 -41.09501 -39.74208 -38.00907 -37.64699 -36.47171 -34.35300 -34.17865 -32.07275 -30.53752 -30.22615 -28.42319 -28.11068 -27.32666 -24.85695 -23.48374 -23.33195 -22.43416 -21.57706 -19.93781 -19.81842 -19.27854 -18.01134 -17.80377 -17.42863 -16.81213 -16.39246 -16.14845 -16.03869 -15.83133 -15.51136 -15.29721 -15.23648 -14.99847 -14.72689 -14.63333 -14.43610 -14.24174 -14.14878 -13.70286 -13.53323 -13.09467 -12.99809 -12.98207 -12.81552 -12.67621 -12.48427 -12.37259 -12.30980 -12.19178 -12.15154 -12.11166 -11.41283 -10.90600 -10.80693 -10.59437 -10.11155 -9.77383 -9.75686 -9.00407 -8.43045 -6.13616 0.15557 0.76874 1.33160 1.45624 1.46118 1.50510 1.82069 2.10222 2.16829 2.23499 2.89645 3.24051 3.30479 3.47493 3.49868 3.74406 3.93611 4.00951 4.03320 4.11072 4.13266 4.30792 4.32383 4.49593 4.54244 4.56191 4.65934 4.72069 4.73559 4.82412 4.85984 4.88262 4.92348 5.02202 5.09904 5.17683 5.23471 5.31723 5.49555 5.51387 5.64164 5.65962 5.74054 5.97599 6.04249 6.20770 6.68834 6.96706 7.08199 7.49308 7.82306 8.76950 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014840 B = 0.002910 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.288029 B = 9621.055185 C =11081.767848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.147 3.853 3 C -0.162 4.162 4 N -0.609 5.609 5 C 0.109 3.891 6 C 0.141 3.859 7 H 0.082 0.918 8 N -0.703 5.703 9 C 0.554 3.446 10 O -0.563 6.563 11 C -0.243 4.243 12 C -0.026 4.026 13 C -0.201 4.201 14 C -0.041 4.041 15 C -0.260 4.260 16 C 0.148 3.852 17 O -0.188 6.188 18 C -0.427 4.427 19 H 0.106 0.894 20 C -0.021 4.021 21 N -0.904 5.904 22 Si 1.019 2.981 23 H -0.255 1.255 24 H -0.275 1.275 25 H -0.254 1.254 26 C -0.169 4.169 27 C 0.522 3.478 28 O -0.567 6.567 29 H 0.055 0.945 30 H 0.037 0.963 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.038 0.962 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.417 0.583 39 H 0.167 0.833 40 H 0.164 0.836 41 H 0.151 0.849 42 H 0.120 0.880 43 H 0.270 0.730 44 H 0.078 0.922 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.865 11.429 -16.915 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.046 3.954 3 C -0.220 4.220 4 N -0.343 5.343 5 C -0.014 4.014 6 C 0.035 3.965 7 H 0.101 0.899 8 N -0.359 5.359 9 C 0.344 3.656 10 O -0.441 6.441 11 C -0.248 4.248 12 C -0.044 4.044 13 C -0.220 4.220 14 C -0.059 4.059 15 C -0.279 4.279 16 C 0.093 3.907 17 O -0.090 6.090 18 C -0.503 4.503 19 H 0.123 0.877 20 C -0.220 4.220 21 N -0.540 5.540 22 Si 0.837 3.163 23 H -0.179 1.179 24 H -0.199 1.199 25 H -0.178 1.178 26 C -0.211 4.211 27 C 0.310 3.690 28 O -0.447 6.447 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.109 0.891 32 H 0.144 0.856 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.057 0.943 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.257 0.743 39 H 0.185 0.815 40 H 0.181 0.819 41 H 0.168 0.832 42 H 0.138 0.862 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.264 11.699 -16.492 21.844 hybrid contribution -0.363 -0.692 1.102 1.351 sum 7.901 11.007 -15.390 20.504 Atomic orbital electron populations 1.22184 0.95417 1.02210 1.02755 1.21244 0.94048 0.93557 0.86570 1.22138 1.01718 0.95459 1.02704 1.48589 1.50807 1.29140 1.05757 1.22425 0.97336 0.86256 0.95347 1.21535 0.87535 0.93659 0.93806 0.89934 1.45419 1.09026 1.37997 1.43447 1.18487 0.88910 0.79240 0.78936 1.90962 1.35917 1.61559 1.55681 1.19249 0.94551 1.05003 1.05972 1.21342 0.89692 0.97113 0.96280 1.21188 0.98636 1.00258 1.01886 1.21429 0.96917 0.94196 0.93392 1.21294 0.92458 1.06600 1.07589 1.20117 0.87300 0.92467 0.90799 1.84169 1.27764 1.42997 1.54112 1.21961 0.95593 1.07410 1.25293 0.87701 1.26698 0.93478 1.02087 0.99760 1.70304 0.98519 1.41630 1.43546 0.84664 0.78264 0.75863 0.77464 1.17936 1.19947 1.17784 1.22812 1.03280 0.96287 0.98720 1.20880 0.79145 0.84255 0.84687 1.90660 1.41240 1.30580 1.82177 0.92609 0.94334 0.89147 0.85638 0.91562 0.89374 0.94287 0.86832 0.87193 0.74305 0.81547 0.81856 0.83182 0.86199 0.92106 0.90353 0.86370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.20 71.98 0.66 -2.23 16 2 C 0.15 2.15 3.48 44.99 0.16 2.30 16 3 C -0.16 -2.39 9.20 71.98 0.66 -1.73 16 4 N -0.61 -11.50 2.83 -793.74 -2.25 -13.75 16 5 C 0.11 1.56 7.02 86.83 0.61 2.17 16 6 C 0.14 3.49 3.53 46.05 0.16 3.65 16 7 H 0.08 2.62 7.54 -2.39 -0.02 2.60 16 8 N -0.70 -18.17 5.10 -440.68 -2.25 -20.42 16 9 C 0.55 22.74 7.76 86.70 0.67 23.41 16 10 O -0.56 -31.25 14.81 16.88 0.25 -31.00 16 11 C -0.24 -9.70 5.89 -19.99 -0.12 -9.81 16 12 C -0.03 -0.68 9.53 22.52 0.21 -0.47 16 13 C -0.20 -4.82 10.02 22.25 0.22 -4.60 16 14 C -0.04 -1.21 10.03 22.30 0.22 -0.98 16 15 C -0.26 -10.70 9.16 22.36 0.20 -10.50 16 16 C 0.15 7.33 6.66 22.91 0.15 7.48 16 17 O -0.19 -11.65 7.84 0.87 0.01 -11.65 16 18 C -0.43 -25.41 9.49 67.93 0.64 -24.77 16 19 H 0.11 5.60 5.21 -2.91 -0.02 5.58 16 20 C -0.02 -1.23 5.49 84.85 0.47 -0.76 16 21 N -0.90 -58.60 13.67 21.62 0.30 -58.30 16 22 Si 1.02 43.87 29.55 68.60 2.03 45.89 16 23 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 25 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 26 C -0.17 -4.63 6.59 30.59 0.20 -4.43 16 27 C 0.52 14.25 7.42 87.87 0.65 14.90 16 28 O -0.57 -19.71 15.15 -3.02 -0.05 -19.75 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.04 0.93 6.81 -2.39 -0.02 0.92 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.13 0.98 8.07 -2.39 -0.02 0.96 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.04 0.85 6.79 -2.39 -0.02 0.84 16 36 H 0.11 0.88 7.80 -2.39 -0.02 0.86 16 37 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.42 6.69 6.46 -92.71 -0.60 6.09 16 39 H 0.17 2.49 6.40 -2.91 -0.02 2.47 16 40 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 41 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 42 H 0.12 5.07 5.64 -2.91 -0.02 5.06 16 43 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 44 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.12 2.91 8.08 -2.39 -0.02 2.89 16 Total: -1.00 -92.59 372.81 4.26 -88.33 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.43 Total: 26.99 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 5.79 Total: -6.36 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -4.20 Total: -92.47 kcal Atomic # 8 Polarization: -62.61 SS G_CDS: 0.21 Total: -62.40 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -92.59 4.26 -88.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265629303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.620 kcal (2) G-P(sol) polarization free energy of solvation -92.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds