Wall clock time and date at job start Tue Mar 31 2020 17:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99951 * 2 1 4 4 C 1.50703 * 119.99990 * 179.97438 * 2 1 3 5 5 O 1.42899 * 109.47360 * 0.02562 * 4 2 1 6 6 C 1.35892 * 117.00047 * 179.97438 * 5 4 2 7 7 C 1.38817 * 120.01731 * 359.72893 * 6 5 4 8 8 C 1.38185 * 120.09188 * 179.69872 * 7 6 5 9 9 C 1.38144 * 120.13518 * 0.59558 * 8 7 6 10 10 C 1.38947 * 120.03215 * 359.67963 * 9 8 7 11 11 N 1.39721 * 120.04916 * 180.02562 * 10 9 8 12 12 C 1.34775 * 120.00045 * 144.57758 * 11 10 9 13 13 O 1.21382 * 120.00394 * 5.11013 * 12 11 10 14 14 C 1.49354 * 119.99848 * 185.11214 * 12 11 10 15 15 O 1.21356 * 120.00242 * 359.86039 * 14 12 11 16 16 N 1.34780 * 119.99641 * 179.86934 * 14 12 11 17 17 C 1.46491 * 120.00447 * 354.34108 * 16 14 12 18 18 C 1.46506 * 119.99837 * 174.34659 * 16 14 12 19 19 C 1.50698 * 109.47455 * 89.99385 * 18 16 14 20 20 H 1.08005 * 119.99914 * 0.02562 * 19 18 16 21 21 C 1.37873 * 120.00207 * 180.02562 * 19 18 16 22 22 N 1.31510 * 119.99939 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99961 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47351 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47274 * 119.99908 * 23 21 19 26 26 H 1.48506 * 109.47242 * 239.99545 * 23 21 19 27 27 C 1.38567 * 120.01719 * 179.97438 * 6 5 4 28 28 H 1.07999 * 120.00592 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.99621 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47280 * 239.99739 * 3 2 1 31 31 H 1.09002 * 109.46641 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47023 * 119.99416 * 3 2 1 33 33 H 1.08999 * 109.46848 * 119.99940 * 4 2 1 34 34 H 1.09002 * 109.46688 * 239.99963 * 4 2 1 35 35 H 1.07995 * 119.95519 * 359.96851 * 7 6 5 36 36 H 1.08007 * 119.93484 * 180.29685 * 8 7 6 37 37 H 1.08000 * 119.98917 * 179.70598 * 9 8 7 38 38 H 0.97002 * 119.99739 * 324.57192 * 11 10 9 39 39 H 1.09001 * 109.47208 * 84.06574 * 17 16 14 40 40 H 1.09000 * 109.47376 * 204.06683 * 17 16 14 41 41 H 1.09005 * 109.47051 * 324.06693 * 17 16 14 42 42 H 1.08998 * 109.47130 * 209.99857 * 18 16 14 43 43 H 1.09003 * 109.46714 * 329.99843 * 18 16 14 44 44 H 0.97003 * 119.99876 * 180.02562 * 22 21 19 45 45 H 1.08006 * 120.06615 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 8 1.1349 -2.3913 0.0005 6 6 1.6544 -3.6470 0.0004 7 6 3.0305 -3.8293 -0.0052 8 6 3.5604 -5.1055 0.0010 9 6 2.7230 -6.2042 0.0004 10 6 1.3447 -6.0280 0.0003 11 7 0.4974 -7.1390 0.0003 12 6 -0.6676 -7.0980 0.6767 13 8 -1.0248 -6.0670 1.2084 14 6 -1.5191 -8.3213 0.7720 15 8 -1.1633 -9.3515 0.2383 16 7 -2.6829 -8.2809 1.4507 17 6 -3.0537 -7.0768 2.1980 18 6 -3.5771 -9.4415 1.4410 19 6 -3.2296 -10.3530 2.5896 20 1 -2.4235 -10.0936 3.2601 21 6 -3.9406 -11.5180 2.7847 22 7 -4.9223 -11.8336 1.9686 23 14 -3.5102 -12.6475 4.2089 24 1 -2.3759 -12.0698 4.9736 25 1 -4.6885 -12.7894 5.1016 26 1 -3.1239 -13.9817 3.6834 27 6 0.8107 -4.7462 0.0008 28 1 -0.5401 0.9352 -0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 2.6901 1.3628 -0.8899 31 1 1.3551 2.1335 -0.0005 32 1 2.6900 1.3629 0.8900 33 1 2.6901 -1.3632 -0.8894 34 1 2.6901 -1.3624 0.8906 35 1 3.6879 -2.9725 -0.0101 36 1 4.6315 -5.2443 0.0014 37 1 3.1397 -7.2005 0.0005 38 1 0.7477 -7.9397 -0.4867 39 1 -3.5258 -6.3619 1.5242 40 1 -3.7512 -7.3426 2.9924 41 1 -2.1600 -6.6300 2.6337 42 1 -4.6091 -9.1058 1.5428 43 1 -3.4616 -9.9812 0.5011 44 1 -5.4228 -12.6531 2.1060 45 1 -0.2603 -4.6063 0.0016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271689121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:07 Heat of formation + Delta-G solvation = -44.499553 kcal Electronic energy + Delta-G solvation = -27492.388859 eV Core-core repulsion = 23476.742869 eV Total energy + Delta-G solvation = -4015.645990 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -40.97942 -40.06280 -38.52026 -37.48535 -35.75214 -35.25386 -34.18235 -32.58940 -30.70853 -29.58592 -28.06471 -27.60829 -27.18942 -26.21434 -24.64346 -23.20971 -22.48738 -21.36644 -19.60226 -18.94304 -18.54682 -17.24802 -16.72123 -16.53081 -16.28923 -16.18580 -16.13814 -15.59032 -15.42955 -15.06641 -14.49265 -14.35773 -14.03392 -13.84522 -13.72943 -13.49925 -13.12021 -13.08872 -12.81100 -12.40529 -12.23107 -12.13550 -11.99658 -11.92197 -11.58663 -11.51609 -11.37768 -11.17616 -10.94585 -10.77037 -10.60146 -10.31263 -10.21549 -9.67646 -9.41365 -8.85811 -8.55435 -8.49680 -8.23293 -7.81909 -6.10683 -4.15771 1.00605 1.28553 1.86616 1.90369 2.57488 2.93171 3.27766 3.35157 3.39988 3.53982 3.75853 4.02192 4.35125 4.40699 4.64669 4.71420 4.77235 4.79525 4.89338 4.91657 5.03838 5.07177 5.19728 5.22365 5.24244 5.36222 5.52944 5.61243 5.67639 5.93335 6.04053 6.09527 6.12699 6.21174 6.26508 6.27623 6.39412 6.48236 6.69039 6.81068 7.16242 7.24939 7.25677 7.34968 7.80790 7.88910 8.11939 8.17604 8.59986 8.89007 9.49233 10.97601 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020019 B = 0.002259 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.312276 B =12390.085609 C =13222.950552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.152 4.152 3 C -0.112 4.112 4 C 0.098 3.902 5 O -0.309 6.309 6 C 0.147 3.853 7 C -0.227 4.227 8 C -0.062 4.062 9 C -0.179 4.179 10 C 0.189 3.811 11 N -0.652 5.652 12 C 0.508 3.492 13 O -0.497 6.497 14 C 0.494 3.506 15 O -0.521 6.521 16 N -0.562 5.562 17 C 0.078 3.922 18 C 0.242 3.758 19 C -0.528 4.528 20 H 0.060 0.940 21 C 0.062 3.938 22 N -0.893 5.893 23 Si 0.901 3.099 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.282 1.282 27 C -0.155 4.155 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.425 0.575 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.041 0.959 43 H 0.047 0.953 44 H 0.264 0.736 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.249 22.396 -5.406 28.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.168 4.168 4 C 0.023 3.977 5 O -0.223 6.223 6 C 0.102 3.898 7 C -0.246 4.246 8 C -0.080 4.080 9 C -0.199 4.199 10 C 0.094 3.906 11 N -0.299 5.299 12 C 0.292 3.708 13 O -0.371 6.371 14 C 0.275 3.725 15 O -0.399 6.399 16 N -0.293 5.293 17 C -0.065 4.065 18 C 0.124 3.876 19 C -0.567 4.567 20 H 0.078 0.922 21 C -0.141 4.141 22 N -0.532 5.532 23 Si 0.729 3.271 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.208 1.208 27 C -0.175 4.175 28 H 0.118 0.882 29 H 0.130 0.870 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.263 0.737 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 15.721 22.451 -5.293 27.914 hybrid contribution 0.499 -1.032 0.610 1.298 sum 16.220 21.420 -4.683 27.273 Atomic orbital electron populations 1.23859 0.95363 1.02681 0.98131 1.21513 0.95978 0.93823 1.03871 1.20758 1.00354 0.93481 1.02251 1.21460 0.91026 0.83582 1.01660 1.86031 1.35584 1.12011 1.88625 1.18676 0.91481 0.84100 0.95587 1.21197 0.93646 0.98613 1.11171 1.20675 0.99497 0.91214 0.96652 1.20887 0.91212 0.99955 1.07885 1.17412 0.89327 0.86240 0.97670 1.43267 1.19384 1.16633 1.50619 1.21035 0.81626 0.90086 0.78075 1.90698 1.70400 1.32262 1.43718 1.19500 0.83167 0.87368 0.82514 1.90747 1.70533 1.31192 1.47406 1.48131 1.18449 1.17488 1.45224 1.22053 1.02084 0.86147 0.96223 1.19534 0.87751 0.81361 0.98990 1.21411 1.17472 1.05645 1.12146 0.92171 1.24936 0.94864 0.97525 0.96754 1.69936 1.21034 1.25031 1.37212 0.86392 0.78290 0.80548 0.81902 1.19740 1.20881 1.20809 1.20462 1.01403 0.88694 1.06988 0.88216 0.87018 0.91518 0.91304 0.91481 0.91059 0.91019 0.85560 0.85312 0.85192 0.73657 0.93070 0.91022 0.89998 0.94066 0.93504 0.92632 0.83321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 13.68 29.01 0.40 -1.03 16 2 C -0.15 -1.20 6.05 -101.07 -0.61 -1.81 16 3 C -0.11 -0.59 10.12 36.00 0.36 -0.23 16 4 C 0.10 0.81 5.15 36.01 0.19 1.00 16 5 O -0.31 -3.63 8.53 -19.40 -0.17 -3.79 16 6 C 0.15 1.80 6.68 -39.25 -0.26 1.54 16 7 C -0.23 -2.24 9.04 -39.39 -0.36 -2.59 16 8 C -0.06 -0.58 10.03 -39.64 -0.40 -0.97 16 9 C -0.18 -1.94 9.96 -39.35 -0.39 -2.33 16 10 C 0.19 2.52 6.29 -83.77 -0.53 1.99 16 11 N -0.65 -9.40 5.32 -10.31 -0.05 -9.46 16 12 C 0.51 8.87 7.61 -11.63 -0.09 8.79 16 13 O -0.50 -8.92 10.71 5.47 0.06 -8.86 16 14 C 0.49 10.40 7.72 -11.63 -0.09 10.31 16 15 O -0.52 -12.24 16.12 5.49 0.09 -12.16 16 16 N -0.56 -12.34 2.86 -183.51 -0.52 -12.86 16 17 C 0.08 1.42 9.27 59.84 0.55 1.98 16 18 C 0.24 6.27 5.09 -5.19 -0.03 6.24 16 19 C -0.53 -14.85 9.39 -34.44 -0.32 -15.18 16 20 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 23 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C -0.15 -2.17 8.63 -39.23 -0.34 -2.51 16 28 H 0.10 0.69 7.83 -52.49 -0.41 0.28 16 29 H 0.11 1.16 6.84 -52.48 -0.36 0.80 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.32 7.78 -51.93 -0.40 -0.08 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.49 7.65 -51.93 -0.40 0.09 16 34 H 0.07 0.52 7.67 -51.93 -0.40 0.12 16 35 H 0.13 0.92 6.29 -52.49 -0.33 0.59 16 36 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.42 5.48 8.30 -40.82 -0.34 5.14 16 39 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 40 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 41 H 0.08 1.46 5.84 -51.93 -0.30 1.15 16 42 H 0.04 1.07 8.07 -51.93 -0.42 0.65 16 43 H 0.05 1.33 7.51 -51.93 -0.39 0.94 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.15 2.33 6.23 -52.48 -0.33 2.00 16 LS Contribution 382.55 15.07 5.76 5.76 Total: -1.00 -32.55 382.55 -7.28 -39.83 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.15 Total: 3.40 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -2.01 Total: 6.83 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.16 Total: -47.71 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.02 Total: -24.80 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.55 -7.28 -39.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271689121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.670 kcal (2) G-P(sol) polarization free energy of solvation -32.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds