Wall clock time and date at job start Tue Mar 31 2020 17:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99951 * 2 1 4 4 C 1.50703 * 119.99990 * 179.97438 * 2 1 3 5 5 O 1.42899 * 109.47360 * 0.02562 * 4 2 1 6 6 C 1.35892 * 117.00047 * 179.97438 * 5 4 2 7 7 C 1.38817 * 120.01731 * 359.72893 * 6 5 4 8 8 C 1.38185 * 120.09188 * 179.69872 * 7 6 5 9 9 C 1.38144 * 120.13518 * 0.59558 * 8 7 6 10 10 C 1.38947 * 120.03215 * 359.67963 * 9 8 7 11 11 N 1.39721 * 120.04916 * 180.02562 * 10 9 8 12 12 C 1.34775 * 120.00045 * 144.57758 * 11 10 9 13 13 O 1.21382 * 120.00394 * 5.11013 * 12 11 10 14 14 C 1.49354 * 119.99848 * 185.11214 * 12 11 10 15 15 O 1.21356 * 120.00242 * 359.86039 * 14 12 11 16 16 N 1.34780 * 119.99641 * 179.86934 * 14 12 11 17 17 C 1.46491 * 120.00447 * 354.34108 * 16 14 12 18 18 C 1.46506 * 119.99837 * 174.34659 * 16 14 12 19 19 C 1.50698 * 109.47455 * 89.99385 * 18 16 14 20 20 H 1.08005 * 119.99914 * 0.02562 * 19 18 16 21 21 C 1.37873 * 120.00207 * 180.02562 * 19 18 16 22 22 N 1.31510 * 119.99939 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99961 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47351 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47274 * 119.99908 * 23 21 19 26 26 H 1.48506 * 109.47242 * 239.99545 * 23 21 19 27 27 C 1.38567 * 120.01719 * 179.97438 * 6 5 4 28 28 H 1.07999 * 120.00592 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.99621 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47280 * 239.99739 * 3 2 1 31 31 H 1.09002 * 109.46641 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47023 * 119.99416 * 3 2 1 33 33 H 1.08999 * 109.46848 * 119.99940 * 4 2 1 34 34 H 1.09002 * 109.46688 * 239.99963 * 4 2 1 35 35 H 1.07995 * 119.95519 * 359.96851 * 7 6 5 36 36 H 1.08007 * 119.93484 * 180.29685 * 8 7 6 37 37 H 1.08000 * 119.98917 * 179.70598 * 9 8 7 38 38 H 0.97002 * 119.99739 * 324.57192 * 11 10 9 39 39 H 1.09001 * 109.47208 * 84.06574 * 17 16 14 40 40 H 1.09000 * 109.47376 * 204.06683 * 17 16 14 41 41 H 1.09005 * 109.47051 * 324.06693 * 17 16 14 42 42 H 1.08998 * 109.47130 * 209.99857 * 18 16 14 43 43 H 1.09003 * 109.46714 * 329.99843 * 18 16 14 44 44 H 0.97003 * 119.99876 * 180.02562 * 22 21 19 45 45 H 1.08006 * 120.06615 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 8 1.1349 -2.3913 0.0005 6 6 1.6544 -3.6470 0.0004 7 6 3.0305 -3.8293 -0.0052 8 6 3.5604 -5.1055 0.0010 9 6 2.7230 -6.2042 0.0004 10 6 1.3447 -6.0280 0.0003 11 7 0.4974 -7.1390 0.0003 12 6 -0.6676 -7.0980 0.6767 13 8 -1.0248 -6.0670 1.2084 14 6 -1.5191 -8.3213 0.7720 15 8 -1.1633 -9.3515 0.2383 16 7 -2.6829 -8.2809 1.4507 17 6 -3.0537 -7.0768 2.1980 18 6 -3.5771 -9.4415 1.4410 19 6 -3.2296 -10.3530 2.5896 20 1 -2.4235 -10.0936 3.2601 21 6 -3.9406 -11.5180 2.7847 22 7 -4.9223 -11.8336 1.9686 23 14 -3.5102 -12.6475 4.2089 24 1 -2.3759 -12.0698 4.9736 25 1 -4.6885 -12.7894 5.1016 26 1 -3.1239 -13.9817 3.6834 27 6 0.8107 -4.7462 0.0008 28 1 -0.5401 0.9352 -0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 2.6901 1.3628 -0.8899 31 1 1.3551 2.1335 -0.0005 32 1 2.6900 1.3629 0.8900 33 1 2.6901 -1.3632 -0.8894 34 1 2.6901 -1.3624 0.8906 35 1 3.6879 -2.9725 -0.0101 36 1 4.6315 -5.2443 0.0014 37 1 3.1397 -7.2005 0.0005 38 1 0.7477 -7.9397 -0.4867 39 1 -3.5258 -6.3619 1.5242 40 1 -3.7512 -7.3426 2.9924 41 1 -2.1600 -6.6300 2.6337 42 1 -4.6091 -9.1058 1.5428 43 1 -3.4616 -9.9812 0.5011 44 1 -5.4228 -12.6531 2.1060 45 1 -0.2603 -4.6063 0.0016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271689121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:04 Heat of formation + Delta-G solvation = -64.848489 kcal Electronic energy + Delta-G solvation = -27493.271255 eV Core-core repulsion = 23476.742869 eV Total energy + Delta-G solvation = -4016.528386 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -42.24377 -41.10367 -39.88378 -38.63036 -37.13841 -36.22242 -35.43460 -34.66171 -31.59610 -30.58486 -30.01419 -28.10359 -27.95880 -27.70576 -26.35780 -24.58565 -23.59183 -22.55716 -21.03690 -19.75181 -19.42654 -18.78807 -18.67554 -17.92281 -17.30430 -17.03350 -16.98446 -16.93690 -16.85658 -16.51566 -16.12471 -15.56890 -15.09856 -14.86408 -14.61911 -14.48991 -14.39471 -14.22016 -13.92237 -13.80401 -13.58053 -13.53526 -13.31759 -12.95104 -12.80511 -12.68780 -12.59243 -12.39326 -12.30297 -12.26314 -12.12551 -11.90592 -11.73538 -11.34066 -10.67175 -10.40855 -10.01713 -9.69224 -9.50500 -9.11940 -8.26235 -6.40693 -0.08007 0.42380 0.56668 1.24416 1.24676 1.37924 1.39477 1.52177 2.03836 2.13009 2.36336 2.59132 2.75828 3.04384 3.25247 3.72630 3.90633 4.08385 4.15128 4.22743 4.23825 4.33766 4.34354 4.38978 4.49781 4.57123 4.65483 4.72156 4.83640 4.86280 4.95852 5.00541 5.11084 5.15413 5.19415 5.22287 5.29542 5.39903 5.44161 5.61638 5.66271 5.70782 5.88767 5.94269 5.97334 6.34435 6.45912 6.61671 6.67997 6.93648 7.29538 8.81721 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020019 B = 0.002259 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.312276 B =12390.085609 C =13222.950552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.146 4.146 3 C -0.110 4.110 4 C 0.087 3.913 5 O -0.330 6.330 6 C 0.136 3.864 7 C -0.215 4.215 8 C -0.053 4.053 9 C -0.176 4.176 10 C 0.164 3.836 11 N -0.637 5.637 12 C 0.518 3.482 13 O -0.505 6.505 14 C 0.489 3.511 15 O -0.553 6.553 16 N -0.572 5.572 17 C 0.082 3.918 18 C 0.256 3.744 19 C -0.546 4.546 20 H 0.053 0.947 21 C 0.011 3.989 22 N -0.924 5.924 23 Si 0.970 3.030 24 H -0.269 1.269 25 H -0.270 1.270 26 H -0.278 1.278 27 C -0.180 4.180 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.159 0.841 36 H 0.169 0.831 37 H 0.150 0.850 38 H 0.431 0.569 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.035 0.965 43 H 0.013 0.987 44 H 0.269 0.731 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.502 23.772 -4.704 31.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.146 4.146 3 C -0.166 4.166 4 C 0.013 3.987 5 O -0.245 6.245 6 C 0.090 3.910 7 C -0.234 4.234 8 C -0.071 4.071 9 C -0.196 4.196 10 C 0.070 3.930 11 N -0.284 5.284 12 C 0.300 3.700 13 O -0.379 6.379 14 C 0.271 3.729 15 O -0.432 6.432 16 N -0.303 5.303 17 C -0.060 4.060 18 C 0.136 3.864 19 C -0.584 4.584 20 H 0.071 0.929 21 C -0.189 4.189 22 N -0.564 5.564 23 Si 0.794 3.206 24 H -0.193 1.193 25 H -0.195 1.195 26 H -0.204 1.204 27 C -0.201 4.201 28 H 0.131 0.869 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.176 0.824 36 H 0.186 0.814 37 H 0.168 0.832 38 H 0.271 0.729 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.053 0.947 43 H 0.031 0.969 44 H 0.078 0.922 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 19.002 23.873 -4.602 30.857 hybrid contribution -0.419 -1.349 0.315 1.448 sum 18.584 22.523 -4.287 29.513 Atomic orbital electron populations 1.23840 0.96072 1.02192 1.00436 1.21858 0.95862 0.94940 1.01983 1.20811 1.00498 0.91883 1.03437 1.21790 0.90978 0.82660 1.03272 1.86030 1.37269 1.12520 1.88638 1.18788 0.92420 0.83860 0.95929 1.21586 0.92719 1.00167 1.08974 1.21155 1.01232 0.90235 0.94485 1.21186 0.89947 1.01723 1.06748 1.17603 0.90199 0.85281 0.99900 1.43076 1.18359 1.17442 1.49511 1.20176 0.82320 0.88427 0.79072 1.90701 1.70823 1.31804 1.44606 1.20117 0.83039 0.88333 0.81388 1.90711 1.71300 1.32796 1.48394 1.48116 1.18555 1.17508 1.46084 1.22160 1.02552 0.84939 0.96304 1.19076 0.88236 0.82343 0.96787 1.21631 1.17488 1.06620 1.12673 0.92873 1.25828 0.94613 0.98983 0.99437 1.70038 1.21817 1.25718 1.38776 0.85329 0.78438 0.78194 0.78610 1.19348 1.19480 1.20365 1.20374 1.00545 0.90072 1.09068 0.86859 0.89593 0.90138 0.90802 0.90279 0.89095 0.89425 0.82389 0.81388 0.83236 0.72926 0.91440 0.90823 0.89314 0.94690 0.96860 0.92179 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.32 13.68 67.78 0.93 -2.39 16 2 C -0.15 -2.10 6.05 -16.49 -0.10 -2.20 16 3 C -0.11 -0.87 10.12 71.24 0.72 -0.15 16 4 C 0.09 1.27 5.15 71.24 0.37 1.63 16 5 O -0.33 -7.64 8.53 -92.33 -0.79 -8.43 16 6 C 0.14 3.19 6.68 22.49 0.15 3.34 16 7 C -0.22 -3.52 9.04 22.40 0.20 -3.32 16 8 C -0.05 -0.77 10.03 22.23 0.22 -0.55 16 9 C -0.18 -3.37 9.96 22.42 0.22 -3.15 16 10 C 0.16 4.29 6.29 38.20 0.24 4.53 16 11 N -0.64 -18.55 5.32 -304.87 -1.62 -20.17 16 12 C 0.52 18.56 7.61 87.24 0.66 19.23 16 13 O -0.50 -18.59 10.71 -3.35 -0.04 -18.62 16 14 C 0.49 21.35 7.72 87.24 0.67 22.03 16 15 O -0.55 -27.01 16.12 -3.26 -0.05 -27.07 16 16 N -0.57 -26.02 2.86 -852.84 -2.44 -28.46 16 17 C 0.08 3.06 9.27 127.77 1.18 4.24 16 18 C 0.26 13.82 5.09 85.63 0.44 14.26 16 19 C -0.55 -31.43 9.39 25.60 0.24 -31.19 16 20 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 21 C 0.01 0.63 5.46 84.65 0.46 1.09 16 22 N -0.92 -54.97 13.29 21.45 0.28 -54.69 16 23 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 27 C -0.18 -5.13 8.63 22.50 0.19 -4.93 16 28 H 0.11 1.57 7.83 -2.91 -0.02 1.55 16 29 H 0.09 1.94 6.84 -2.91 -0.02 1.92 16 30 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.07 0.53 7.78 -2.39 -0.02 0.51 16 32 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.09 0.96 7.65 -2.39 -0.02 0.94 16 34 H 0.09 1.00 7.67 -2.39 -0.02 0.98 16 35 H 0.16 1.53 6.29 -2.91 -0.02 1.52 16 36 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 37 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 38 H 0.43 11.22 8.30 -92.71 -0.77 10.45 16 39 H 0.07 2.27 8.13 -2.39 -0.02 2.25 16 40 H 0.07 2.67 8.03 -2.39 -0.02 2.65 16 41 H 0.09 3.19 5.84 -2.38 -0.01 3.18 16 42 H 0.04 1.90 8.07 -2.39 -0.02 1.89 16 43 H 0.01 0.80 7.51 -2.39 -0.02 0.78 16 44 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 45 H 0.12 4.06 6.23 -2.91 -0.02 4.04 16 Total: -1.00 -72.96 382.55 4.44 -68.52 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.25 Total: 19.77 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: 6.81 Total: 22.46 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -3.77 Total: -103.31 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -0.88 Total: -54.12 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -72.96 4.44 -68.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271689121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.674 kcal (2) G-P(sol) polarization free energy of solvation -72.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds