Wall clock time and date at job start Tue Mar 31 2020 17:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47627 * 2 1 4 4 H 1.08995 * 109.46986 * 54.99495 * 3 2 1 5 5 C 1.53008 * 109.46649 * 294.99883 * 3 2 1 6 6 C 1.53001 * 109.47144 * 175.00124 * 3 2 1 7 7 H 1.09004 * 110.65826 * 57.08433 * 6 3 2 8 8 N 1.47306 * 110.69939 * 294.22604 * 6 3 2 9 9 C 1.34527 * 106.62141 * 241.77618 * 8 6 3 10 10 O 1.21537 * 123.77419 * 179.77222 * 9 8 6 11 11 N 1.33787 * 112.45573 * 359.76258 * 9 8 6 12 12 C 1.46508 * 124.17882 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46888 * 269.96123 * 12 11 9 14 14 C 1.38298 * 119.92792 * 269.72512 * 13 12 11 15 15 C 1.38102 * 120.06656 * 179.72638 * 14 13 12 16 16 C 1.38875 * 119.93304 * 0.54445 * 15 14 13 17 17 O 1.35745 * 120.07567 * 179.74874 * 16 15 14 18 18 C 1.34826 * 117.00667 * 174.44392 * 17 16 15 19 19 H 1.08002 * 119.99570 * 5.06097 * 18 17 16 20 20 C 1.38650 * 120.00320 * 185.05718 * 18 17 16 21 21 N 1.31552 * 119.99959 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47025 * 60.00191 * 22 20 18 24 24 H 1.48502 * 109.46863 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47198 * 300.00196 * 22 20 18 26 26 C 1.38885 * 119.85979 * 359.72971 * 16 15 14 27 27 C 1.38099 * 119.93129 * 359.97438 * 26 16 15 28 28 C 1.34773 * 111.64757 * 0.02562 * 11 9 8 29 29 O 1.21226 * 127.15998 * 179.97438 * 28 11 9 30 30 H 1.08998 * 109.46643 * 59.99870 * 1 2 3 31 31 H 1.08994 * 109.47357 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46905 * 300.00853 * 1 2 3 33 33 H 1.08995 * 109.47298 * 239.99314 * 2 1 3 34 34 H 1.09001 * 109.46869 * 119.99656 * 2 1 3 35 35 H 1.09009 * 109.47008 * 299.99722 * 5 3 2 36 36 H 1.08998 * 109.47317 * 59.99669 * 5 3 2 37 37 H 1.09001 * 109.46668 * 180.02562 * 5 3 2 38 38 H 0.97005 * 126.69269 * 61.50430 * 8 6 3 39 39 H 1.08998 * 109.46925 * 29.95678 * 12 11 9 40 40 H 1.08997 * 109.46954 * 149.96339 * 12 11 9 41 41 H 1.08006 * 119.96894 * 359.97438 * 14 13 12 42 42 H 1.08007 * 120.03678 * 180.27557 * 15 14 13 43 43 H 0.96999 * 119.99888 * 179.97438 * 21 20 18 44 44 H 1.07996 * 120.03808 * 180.02562 * 26 16 15 45 45 H 1.07996 * 119.96761 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6353 2.1265 -1.3075 6 6 3.5649 1.4442 0.1257 7 1 4.0178 0.8657 -0.6796 8 7 3.9799 0.9161 1.4367 9 6 4.6359 1.9103 2.0619 10 8 5.1119 1.8100 3.1757 11 7 4.7060 3.0217 1.3205 12 6 5.3629 4.2584 1.7513 13 6 4.3650 5.1360 2.4619 14 6 3.6238 6.0581 1.7456 15 6 2.7045 6.8599 2.3930 16 6 2.5327 6.7474 3.7665 17 8 1.6335 7.5376 4.4066 18 6 1.4331 7.2988 5.7183 19 1 2.0352 6.5635 6.2314 20 6 0.4542 7.9972 6.4086 21 7 -0.2788 8.8932 5.7837 22 14 0.1772 7.6668 8.2261 23 1 1.4240 7.9591 8.9780 24 1 -0.9182 8.5361 8.7259 25 1 -0.1948 6.2421 8.4192 26 6 3.2826 5.8244 4.4839 27 6 4.1959 5.0212 3.8298 28 6 4.0977 2.8633 0.1284 29 8 3.9944 3.6859 -0.7561 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 2.0700 1.5873 -2.1493 36 1 0.5490 2.1252 -1.3971 37 1 1.9991 3.1540 -1.3077 38 1 3.8095 0.0263 1.7835 39 1 6.1822 4.0176 2.4287 40 1 5.7541 4.7844 0.8805 41 1 3.7613 6.1485 0.6781 42 1 2.1228 7.5767 1.8324 43 1 -0.9639 9.3815 6.2665 44 1 3.1510 5.7342 5.5520 45 1 4.7790 4.3030 4.3870 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272507634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:04 Heat of formation + Delta-G solvation = -56.038249 kcal Electronic energy + Delta-G solvation = -28740.895100 eV Core-core repulsion = 24724.748755 eV Total energy + Delta-G solvation = -4016.146345 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.50668 -39.07245 -38.66003 -37.46635 -36.64403 -35.67948 -34.11881 -32.33969 -30.38017 -30.27160 -30.10492 -27.10923 -26.27887 -25.14409 -24.31211 -22.80968 -21.90397 -21.20605 -20.58014 -20.00429 -18.10784 -18.00866 -17.30225 -16.81832 -16.67119 -15.64345 -15.47704 -15.35111 -14.81530 -14.62321 -14.58182 -14.37816 -14.24294 -13.82831 -13.65606 -13.50419 -13.24039 -12.83642 -12.78694 -12.65814 -12.18547 -12.04170 -11.95086 -11.70382 -11.57011 -11.42008 -11.22462 -11.13384 -11.00063 -10.91678 -10.69209 -10.65536 -10.45861 -10.03207 -9.67812 -9.52317 -9.36273 -8.86932 -8.20077 -7.27831 -6.49026 -4.07658 1.58466 1.89677 2.21960 2.53659 3.02432 3.06542 3.11991 3.13772 3.15680 3.84038 3.94243 4.23315 4.41614 4.54398 4.67670 4.76000 4.98772 5.05590 5.08189 5.22175 5.22938 5.27347 5.33630 5.36515 5.48817 5.51899 5.66268 5.70288 5.74126 5.76504 5.82711 5.85287 5.86619 6.01564 6.17694 6.20226 6.39780 6.64771 6.67106 6.87797 7.00820 7.06044 7.21783 7.35733 7.36580 7.41118 7.78620 7.96185 8.10938 8.96367 9.65072 10.68532 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.003151 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.714909 B = 8885.067448 C = 9432.533152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.091 4.091 4 H 0.084 0.916 5 C -0.157 4.157 6 C 0.096 3.904 7 H 0.123 0.877 8 N -0.728 5.728 9 C 0.702 3.298 10 O -0.541 6.541 11 N -0.568 5.568 12 C 0.177 3.823 13 C -0.224 4.224 14 C -0.050 4.050 15 C -0.198 4.198 16 C 0.163 3.837 17 O -0.173 6.173 18 C -0.393 4.393 19 H 0.093 0.907 20 C 0.041 3.959 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.239 4.239 27 C -0.042 4.042 28 C 0.526 3.474 29 O -0.463 6.463 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.436 0.564 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.271 0.729 44 H 0.128 0.872 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.115 -17.741 -12.771 22.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.111 4.111 4 H 0.103 0.897 5 C -0.214 4.214 6 C -0.013 4.013 7 H 0.141 0.859 8 N -0.393 5.393 9 C 0.403 3.597 10 O -0.414 6.414 11 N -0.313 5.313 12 C 0.058 3.942 13 C -0.226 4.226 14 C -0.069 4.069 15 C -0.217 4.217 16 C 0.108 3.892 17 O -0.076 6.076 18 C -0.469 4.469 19 H 0.110 0.890 20 C -0.164 4.164 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.258 4.258 27 C -0.061 4.061 28 C 0.313 3.687 29 O -0.333 6.333 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.281 0.719 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.081 0.919 44 H 0.145 0.855 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.049 -16.857 -12.641 21.921 hybrid contribution -0.284 -0.609 1.182 1.359 sum 5.765 -17.466 -11.459 21.670 Atomic orbital electron populations 1.21810 0.95087 1.01788 1.02519 1.21541 0.96783 0.94928 1.02026 1.21383 0.90631 0.98150 1.00912 0.89716 1.21985 1.02025 1.02173 0.95252 1.22186 0.97886 0.93218 0.87979 0.85932 1.45578 1.59988 1.15667 1.18059 1.15930 0.79248 0.80483 0.84023 1.90999 1.51479 1.81987 1.16917 1.46726 1.52864 1.14401 1.17318 1.20394 0.93596 0.80560 0.99697 1.19304 1.05559 1.03509 0.94193 1.20570 0.93936 0.94018 0.98360 1.20189 1.04272 1.05243 0.91996 1.19446 0.89060 0.88954 0.91729 1.83971 1.50767 1.48607 1.24258 1.21319 1.19584 1.24116 0.81917 0.88999 1.25302 0.95002 0.95627 1.00468 1.70028 1.20106 1.22394 1.36956 0.85777 0.78563 0.78724 0.80376 1.19390 1.20203 1.19446 1.21154 1.02038 1.01784 1.00855 1.20717 0.95771 0.96296 0.93341 1.20745 0.76980 0.89370 0.81652 1.90756 1.54890 1.48658 1.38972 0.92130 0.92605 0.92400 0.91482 0.91958 0.92286 0.91614 0.90533 0.71948 0.88704 0.88819 0.86755 0.86424 0.91873 0.85475 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.67 37.15 0.36 -0.69 16 2 C -0.12 -0.72 5.36 -26.73 -0.14 -0.86 16 3 C -0.09 -0.77 2.19 -90.61 -0.20 -0.96 16 4 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 5 C -0.16 -1.34 8.61 37.16 0.32 -1.02 16 6 C 0.10 0.83 3.21 -68.21 -0.22 0.61 16 7 H 0.12 0.74 8.14 -51.93 -0.42 0.31 16 8 N -0.73 -6.75 5.95 -59.19 -0.35 -7.10 16 9 C 0.70 9.48 8.62 -88.02 -0.76 8.72 16 10 O -0.54 -9.08 17.48 5.33 0.09 -8.98 16 11 N -0.57 -7.60 2.59 -122.02 -0.32 -7.92 16 12 C 0.18 2.48 5.82 -5.19 -0.03 2.45 16 13 C -0.22 -3.92 5.47 -104.57 -0.57 -4.49 16 14 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 15 C -0.20 -4.25 9.99 -39.40 -0.39 -4.64 16 16 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 17 O -0.17 -4.98 9.76 0.08 0.00 -4.98 16 18 C -0.39 -11.05 9.49 30.88 0.29 -10.76 16 19 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 20 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 21 N -0.86 -25.20 13.67 55.48 0.76 -24.44 16 22 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 26 C -0.24 -5.34 9.17 -39.39 -0.36 -5.70 16 27 C -0.04 -0.82 9.69 -39.61 -0.38 -1.20 16 28 C 0.53 6.42 7.37 -10.55 -0.08 6.34 16 29 O -0.46 -6.49 15.63 5.60 0.09 -6.40 16 30 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.35 7.23 -51.93 -0.38 -0.02 16 35 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 36 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 37 H 0.08 0.84 5.93 -51.93 -0.31 0.54 16 38 H 0.44 2.98 8.29 -40.82 -0.34 2.64 16 39 H 0.09 1.26 7.80 -51.93 -0.41 0.86 16 40 H 0.09 1.17 7.94 -51.93 -0.41 0.76 16 41 H 0.11 1.88 8.06 -52.48 -0.42 1.45 16 42 H 0.12 2.45 8.06 -52.48 -0.42 2.03 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 45 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 374.94 15.07 5.65 5.65 Total: -1.00 -33.06 374.94 -8.04 -41.10 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.03 Total: 6.28 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -2.91 Total: -8.76 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.09 Total: -39.46 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.18 Total: -20.37 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.06 -8.04 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272507634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.940 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds