Wall clock time and date at job start Tue Mar 31 2020 17:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47627 * 2 1 4 4 H 1.08995 * 109.46986 * 54.99495 * 3 2 1 5 5 C 1.53008 * 109.46649 * 294.99883 * 3 2 1 6 6 C 1.53001 * 109.47144 * 175.00124 * 3 2 1 7 7 H 1.09004 * 110.65826 * 57.08433 * 6 3 2 8 8 N 1.47306 * 110.69939 * 294.22604 * 6 3 2 9 9 C 1.34527 * 106.62141 * 241.77618 * 8 6 3 10 10 O 1.21537 * 123.77419 * 179.77222 * 9 8 6 11 11 N 1.33787 * 112.45573 * 359.76258 * 9 8 6 12 12 C 1.46508 * 124.17882 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46888 * 269.96123 * 12 11 9 14 14 C 1.38298 * 119.92792 * 269.72512 * 13 12 11 15 15 C 1.38102 * 120.06656 * 179.72638 * 14 13 12 16 16 C 1.38875 * 119.93304 * 0.54445 * 15 14 13 17 17 O 1.35745 * 120.07567 * 179.74874 * 16 15 14 18 18 C 1.34826 * 117.00667 * 174.44392 * 17 16 15 19 19 H 1.08002 * 119.99570 * 5.06097 * 18 17 16 20 20 C 1.38650 * 120.00320 * 185.05718 * 18 17 16 21 21 N 1.31552 * 119.99959 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47025 * 60.00191 * 22 20 18 24 24 H 1.48502 * 109.46863 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47198 * 300.00196 * 22 20 18 26 26 C 1.38885 * 119.85979 * 359.72971 * 16 15 14 27 27 C 1.38099 * 119.93129 * 359.97438 * 26 16 15 28 28 C 1.34773 * 111.64757 * 0.02562 * 11 9 8 29 29 O 1.21226 * 127.15998 * 179.97438 * 28 11 9 30 30 H 1.08998 * 109.46643 * 59.99870 * 1 2 3 31 31 H 1.08994 * 109.47357 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46905 * 300.00853 * 1 2 3 33 33 H 1.08995 * 109.47298 * 239.99314 * 2 1 3 34 34 H 1.09001 * 109.46869 * 119.99656 * 2 1 3 35 35 H 1.09009 * 109.47008 * 299.99722 * 5 3 2 36 36 H 1.08998 * 109.47317 * 59.99669 * 5 3 2 37 37 H 1.09001 * 109.46668 * 180.02562 * 5 3 2 38 38 H 0.97005 * 126.69269 * 61.50430 * 8 6 3 39 39 H 1.08998 * 109.46925 * 29.95678 * 12 11 9 40 40 H 1.08997 * 109.46954 * 149.96339 * 12 11 9 41 41 H 1.08006 * 119.96894 * 359.97438 * 14 13 12 42 42 H 1.08007 * 120.03678 * 180.27557 * 15 14 13 43 43 H 0.96999 * 119.99888 * 179.97438 * 21 20 18 44 44 H 1.07996 * 120.03808 * 180.02562 * 26 16 15 45 45 H 1.07996 * 119.96761 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6353 2.1265 -1.3075 6 6 3.5649 1.4442 0.1257 7 1 4.0178 0.8657 -0.6796 8 7 3.9799 0.9161 1.4367 9 6 4.6359 1.9103 2.0619 10 8 5.1119 1.8100 3.1757 11 7 4.7060 3.0217 1.3205 12 6 5.3629 4.2584 1.7513 13 6 4.3650 5.1360 2.4619 14 6 3.6238 6.0581 1.7456 15 6 2.7045 6.8599 2.3930 16 6 2.5327 6.7474 3.7665 17 8 1.6335 7.5376 4.4066 18 6 1.4331 7.2988 5.7183 19 1 2.0352 6.5635 6.2314 20 6 0.4542 7.9972 6.4086 21 7 -0.2788 8.8932 5.7837 22 14 0.1772 7.6668 8.2261 23 1 1.4240 7.9591 8.9780 24 1 -0.9182 8.5361 8.7259 25 1 -0.1948 6.2421 8.4192 26 6 3.2826 5.8244 4.4839 27 6 4.1959 5.0212 3.8298 28 6 4.0977 2.8633 0.1284 29 8 3.9944 3.6859 -0.7561 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 2.0700 1.5873 -2.1493 36 1 0.5490 2.1252 -1.3971 37 1 1.9991 3.1540 -1.3077 38 1 3.8095 0.0263 1.7835 39 1 6.1822 4.0176 2.4287 40 1 5.7541 4.7844 0.8805 41 1 3.7613 6.1485 0.6781 42 1 2.1228 7.5767 1.8324 43 1 -0.9639 9.3815 6.2665 44 1 3.1510 5.7342 5.5520 45 1 4.7790 4.3030 4.3870 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272507634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:03 Heat of formation + Delta-G solvation = -77.504258 kcal Electronic energy + Delta-G solvation = -28741.825936 eV Core-core repulsion = 24724.748755 eV Total energy + Delta-G solvation = -4017.077181 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.48667 -40.85063 -39.70016 -38.71788 -37.94185 -36.74127 -35.14495 -34.29816 -31.91527 -31.63599 -31.01479 -28.12528 -27.69811 -26.82399 -25.11535 -23.94553 -23.44945 -22.64071 -21.24296 -21.18130 -19.91017 -19.11351 -18.89675 -18.05817 -17.65029 -16.71286 -16.49906 -16.45830 -16.29579 -16.19582 -15.90449 -15.59024 -15.45346 -15.17887 -15.08382 -14.67446 -14.44172 -14.28525 -13.99139 -13.67779 -13.49117 -13.13181 -13.09668 -12.91199 -12.66903 -12.62553 -12.57120 -12.39439 -12.35021 -12.17219 -11.97054 -11.72083 -11.50208 -11.25557 -10.97873 -10.85223 -10.80024 -10.39979 -9.88110 -9.07831 -8.51704 -6.20603 0.41085 0.51210 0.62404 1.32680 1.34306 1.45620 1.49025 1.99491 2.14634 2.21623 2.76331 2.96787 3.10974 3.42596 3.52520 3.72811 3.88470 3.90328 4.05263 4.09215 4.15966 4.25557 4.39260 4.48533 4.53766 4.55786 4.63189 4.67021 4.68198 4.76963 4.82756 4.97052 5.07956 5.09146 5.13013 5.19443 5.20481 5.22213 5.44378 5.46812 5.53789 5.62902 5.66450 5.84545 5.96971 6.08769 6.09632 6.41555 6.92388 7.13328 7.70038 8.70793 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.003151 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.714909 B = 8885.067448 C = 9432.533152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.110 4.110 3 C -0.087 4.087 4 H 0.054 0.946 5 C -0.155 4.155 6 C 0.107 3.893 7 H 0.165 0.835 8 N -0.707 5.707 9 C 0.697 3.303 10 O -0.578 6.578 11 N -0.574 5.574 12 C 0.176 3.824 13 C -0.195 4.195 14 C -0.041 4.041 15 C -0.205 4.205 16 C 0.127 3.873 17 O -0.226 6.226 18 C -0.419 4.419 19 H 0.100 0.900 20 C -0.018 4.018 21 N -0.917 5.917 22 Si 1.017 2.983 23 H -0.257 1.257 24 H -0.268 1.268 25 H -0.259 1.259 26 C -0.246 4.246 27 C -0.042 4.042 28 C 0.519 3.481 29 O -0.481 6.481 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.450 0.550 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.143 0.857 42 H 0.116 0.884 43 H 0.274 0.726 44 H 0.119 0.881 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.643 -21.034 -14.163 26.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C -0.107 4.107 4 H 0.073 0.927 5 C -0.212 4.212 6 C -0.002 4.002 7 H 0.182 0.818 8 N -0.371 5.371 9 C 0.398 3.602 10 O -0.454 6.454 11 N -0.319 5.319 12 C 0.056 3.944 13 C -0.197 4.197 14 C -0.059 4.059 15 C -0.225 4.225 16 C 0.076 3.924 17 O -0.132 6.132 18 C -0.494 4.494 19 H 0.117 0.883 20 C -0.216 4.216 21 N -0.554 5.554 22 Si 0.836 3.164 23 H -0.181 1.181 24 H -0.193 1.193 25 H -0.183 1.183 26 C -0.265 4.265 27 C -0.061 4.061 28 C 0.307 3.693 29 O -0.352 6.352 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.297 0.703 39 H 0.125 0.875 40 H 0.135 0.865 41 H 0.161 0.839 42 H 0.134 0.866 43 H 0.084 0.916 44 H 0.137 0.863 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.595 -20.217 -14.092 25.788 hybrid contribution -0.573 0.243 1.310 1.450 sum 7.023 -19.975 -12.781 24.732 Atomic orbital electron populations 1.21832 0.95721 1.02267 1.01667 1.21539 0.96168 0.93315 1.03677 1.21346 0.90183 0.99450 0.99711 0.92694 1.21954 1.02284 1.00875 0.96099 1.22348 0.97987 0.91286 0.88532 0.81785 1.45494 1.58343 1.15427 1.17885 1.16087 0.79423 0.81082 0.83652 1.90980 1.53273 1.82632 1.18506 1.46651 1.53208 1.14108 1.17947 1.20422 0.92637 0.80664 1.00673 1.19775 1.04141 1.02170 0.93620 1.20854 0.92564 0.92902 0.99628 1.20429 1.05072 1.05841 0.91129 1.19925 0.89522 0.90018 0.92975 1.83940 1.53321 1.51128 1.24787 1.21789 1.20423 1.24855 0.82374 0.88251 1.26581 0.94274 0.95065 1.05725 1.70168 1.21577 1.24389 1.39283 0.84673 0.78978 0.79068 0.73667 1.18099 1.19280 1.18293 1.21223 1.02632 1.02013 1.00658 1.20912 0.95055 0.95835 0.94300 1.21324 0.76391 0.90691 0.80847 1.90758 1.55353 1.49654 1.39387 0.92084 0.91461 0.94242 0.89019 0.91057 0.90081 0.91445 0.93174 0.70283 0.87463 0.86514 0.83940 0.86563 0.91647 0.86343 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.67 71.98 0.70 -1.10 16 2 C -0.11 -0.98 5.36 30.59 0.16 -0.81 16 3 C -0.09 -1.23 2.19 -10.79 -0.02 -1.25 16 4 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 5 C -0.15 -2.28 8.61 71.98 0.62 -1.66 16 6 C 0.11 1.44 3.21 44.37 0.14 1.58 16 7 H 0.17 1.04 8.14 -2.39 -0.02 1.02 16 8 N -0.71 -10.73 5.95 -459.62 -2.73 -13.47 16 9 C 0.70 17.02 8.62 179.44 1.55 18.56 16 10 O -0.58 -18.27 17.48 -3.83 -0.07 -18.34 16 11 N -0.57 -13.78 2.59 -777.21 -2.01 -15.79 16 12 C 0.18 4.43 5.82 85.63 0.50 4.93 16 13 C -0.20 -6.50 5.47 -19.83 -0.11 -6.61 16 14 C -0.04 -1.46 9.69 22.25 0.22 -1.24 16 15 C -0.21 -9.05 9.99 22.39 0.22 -8.82 16 16 C 0.13 6.50 6.65 22.58 0.15 6.65 16 17 O -0.23 -13.83 9.76 -22.65 -0.22 -14.06 16 18 C -0.42 -24.82 9.49 67.92 0.64 -24.18 16 19 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 20 C -0.02 -1.05 5.49 84.83 0.47 -0.58 16 21 N -0.92 -56.54 13.67 21.61 0.30 -56.25 16 22 Si 1.02 43.33 29.55 68.60 2.03 45.36 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 26 C -0.25 -11.29 9.17 22.39 0.21 -11.09 16 27 C -0.04 -1.61 9.69 22.25 0.22 -1.39 16 28 C 0.52 11.14 7.37 87.94 0.65 11.79 16 29 O -0.48 -12.21 15.63 -2.86 -0.04 -12.25 16 30 H 0.06 0.68 6.56 -2.39 -0.02 0.67 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.04 0.58 8.14 -2.39 -0.02 0.57 16 33 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.07 0.53 7.23 -2.39 -0.02 0.52 16 35 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.07 0.97 6.56 -2.39 -0.02 0.95 16 37 H 0.05 1.03 5.93 -2.39 -0.01 1.01 16 38 H 0.45 4.51 8.29 -92.70 -0.77 3.74 16 39 H 0.11 2.52 7.80 -2.39 -0.02 2.50 16 40 H 0.12 2.47 7.94 -2.39 -0.02 2.45 16 41 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 42 H 0.12 5.05 8.06 -2.91 -0.02 5.03 16 43 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.12 5.56 5.64 -2.91 -0.02 5.54 16 45 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -77.46 374.94 3.81 -73.65 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.26 Total: 26.36 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 6.31 Total: -15.22 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -4.45 Total: -85.50 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -0.33 Total: -44.64 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -77.46 3.81 -73.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272507634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.855 kcal (2) G-P(sol) polarization free energy of solvation -77.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds