Wall clock time and date at job start Tue Mar 31 2020 17:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46843 * 2 1 4 4 H 1.08992 * 109.47398 * 304.99887 * 3 2 1 5 5 C 1.52995 * 109.47075 * 65.00246 * 3 2 1 6 6 C 1.53003 * 109.47117 * 184.99821 * 3 2 1 7 7 H 1.08997 * 110.65802 * 57.08912 * 6 3 2 8 8 N 1.47312 * 110.59914 * 294.17466 * 6 3 2 9 9 C 1.34523 * 106.62156 * 241.25219 * 8 6 3 10 10 O 1.21539 * 123.77520 * 180.21044 * 9 8 6 11 11 N 1.33799 * 112.45621 * 0.37805 * 9 8 6 12 12 C 1.46498 * 124.17920 * 179.86227 * 11 9 8 13 13 C 1.50700 * 109.47452 * 269.70859 * 12 11 9 14 14 C 1.38308 * 119.92622 * 269.72788 * 13 12 11 15 15 C 1.38101 * 120.06568 * 179.72486 * 14 13 12 16 16 C 1.38878 * 119.93104 * 0.54436 * 15 14 13 17 17 O 1.35754 * 120.07164 * 179.75199 * 16 15 14 18 18 C 1.34826 * 117.00189 * 174.44468 * 17 16 15 19 19 H 1.08004 * 120.00037 * 5.04820 * 18 17 16 20 20 C 1.38649 * 119.99902 * 185.05667 * 18 17 16 21 21 N 1.31560 * 120.00088 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99965 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47256 * 59.99992 * 22 20 18 24 24 H 1.48507 * 109.47441 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47553 * 299.99991 * 22 20 18 26 26 C 1.38883 * 119.86394 * 359.72457 * 16 15 14 27 27 C 1.38108 * 119.92646 * 0.02562 * 26 16 15 28 28 C 1.34766 * 111.63955 * 359.60287 * 11 9 8 29 29 O 1.21236 * 127.15368 * 180.19055 * 28 11 9 30 30 H 1.08992 * 109.47453 * 299.99517 * 1 2 3 31 31 H 1.09006 * 109.46961 * 60.00549 * 1 2 3 32 32 H 1.08996 * 109.46748 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47730 * 240.00500 * 2 1 3 34 34 H 1.08995 * 109.47385 * 119.99721 * 2 1 3 35 35 H 1.09000 * 109.47462 * 180.02562 * 5 3 2 36 36 H 1.09005 * 109.47206 * 299.99930 * 5 3 2 37 37 H 1.09002 * 109.47307 * 59.99568 * 5 3 2 38 38 H 0.97003 * 126.68822 * 61.44090 * 8 6 3 39 39 H 1.09005 * 109.46735 * 29.70583 * 12 11 9 40 40 H 1.08995 * 109.47337 * 149.70495 * 12 11 9 41 41 H 1.07995 * 119.96485 * 359.97438 * 14 13 12 42 42 H 1.08003 * 120.03446 * 180.27526 * 15 14 13 43 43 H 0.96999 * 120.00102 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.03871 * 180.02562 * 26 16 15 45 45 H 1.07999 * 119.96006 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6351 2.1265 1.3073 6 6 3.5647 1.4444 -0.1257 7 1 3.8770 0.9159 -1.0263 8 7 4.1840 0.8441 1.0686 9 6 4.9470 1.8002 1.6282 10 8 5.6053 1.6353 2.6365 11 7 4.8975 2.9541 0.9528 12 6 5.6273 4.1648 1.3374 13 6 4.7694 4.9987 2.2538 14 6 3.9265 5.9595 1.7253 15 6 3.1349 6.7213 2.5620 16 6 3.1942 6.5297 3.9362 17 8 2.4211 7.2805 4.7618 18 6 2.4409 6.9663 6.0728 19 1 3.1142 6.2035 6.4351 20 6 1.5969 7.6224 6.9557 21 7 0.7771 8.5518 6.5143 22 14 1.6239 7.1866 8.7719 23 1 2.9811 7.4359 9.3207 24 1 0.6357 8.0251 9.4970 25 1 1.2768 5.7529 8.9422 26 6 4.0458 5.5680 4.4643 27 6 4.8311 4.8057 3.6218 28 6 4.0979 2.8634 -0.1282 29 8 3.8550 3.7354 -0.9346 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.9980 3.1543 1.3072 36 1 0.5488 2.1252 1.3970 37 1 2.0698 1.5875 2.1492 38 1 4.0667 -0.0645 1.3875 39 1 6.5463 3.8866 1.8533 40 1 5.8717 4.7407 0.4448 41 1 3.8844 6.1112 0.6569 42 1 2.4736 7.4684 2.1484 43 1 0.1868 9.0110 7.1321 44 1 4.0938 5.4163 5.5325 45 1 5.4931 4.0574 4.0318 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272507635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:08 Heat of formation + Delta-G solvation = -55.384645 kcal Electronic energy + Delta-G solvation = -29005.983879 eV Core-core repulsion = 24989.865876 eV Total energy + Delta-G solvation = -4016.118003 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.55563 -39.06981 -38.58090 -37.53150 -36.66577 -35.56134 -34.05399 -32.33612 -30.27404 -30.15999 -30.09917 -27.45078 -26.30603 -25.13870 -24.30851 -22.84489 -21.91404 -21.19881 -20.31933 -19.98002 -18.04753 -17.97289 -17.34531 -16.90258 -16.45157 -15.73432 -15.56909 -15.15605 -14.93221 -14.62997 -14.54463 -14.30783 -14.28943 -13.92529 -13.65677 -13.57720 -13.42625 -12.79556 -12.65792 -12.49248 -12.28522 -11.99264 -11.92499 -11.59264 -11.51193 -11.43247 -11.19260 -11.15967 -10.96705 -10.92628 -10.68646 -10.65254 -10.45798 -10.12545 -9.67906 -9.50018 -9.36167 -8.86792 -8.19872 -7.27575 -6.48922 -4.07574 1.60320 1.90446 2.22068 2.54726 3.04532 3.08259 3.12013 3.13802 3.15637 3.85243 3.94261 4.22069 4.43795 4.54644 4.63201 4.80670 4.98534 5.05727 5.11872 5.21768 5.22972 5.31029 5.34111 5.36802 5.49703 5.52646 5.67557 5.72833 5.75545 5.76593 5.83480 5.84112 5.87435 6.02807 6.20320 6.21506 6.39962 6.66260 6.67319 6.87977 7.01144 7.06908 7.22035 7.36037 7.37217 7.41272 7.78758 7.96249 8.12540 8.96470 9.65234 10.68623 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.003268 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.082546 B = 8566.409404 C = 9218.015248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.089 4.089 4 H 0.095 0.905 5 C -0.155 4.155 6 C 0.096 3.904 7 H 0.123 0.877 8 N -0.726 5.726 9 C 0.704 3.296 10 O -0.541 6.541 11 N -0.567 5.567 12 C 0.176 3.824 13 C -0.222 4.222 14 C -0.050 4.050 15 C -0.197 4.197 16 C 0.163 3.837 17 O -0.174 6.174 18 C -0.393 4.393 19 H 0.093 0.907 20 C 0.041 3.959 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.239 4.239 27 C -0.042 4.042 28 C 0.527 3.473 29 O -0.468 6.468 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.436 0.564 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.271 0.729 44 H 0.127 0.873 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.794 -17.164 -13.908 22.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.109 4.109 4 H 0.113 0.887 5 C -0.212 4.212 6 C -0.013 4.013 7 H 0.141 0.859 8 N -0.391 5.391 9 C 0.404 3.596 10 O -0.415 6.415 11 N -0.313 5.313 12 C 0.057 3.943 13 C -0.224 4.224 14 C -0.069 4.069 15 C -0.217 4.217 16 C 0.108 3.892 17 O -0.076 6.076 18 C -0.469 4.469 19 H 0.110 0.890 20 C -0.164 4.164 21 N -0.495 5.495 22 Si 0.765 3.235 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.258 4.258 27 C -0.061 4.061 28 C 0.314 3.686 29 O -0.337 6.337 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.280 0.720 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.145 0.855 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.749 -16.285 -13.719 21.621 hybrid contribution -0.087 -0.627 1.129 1.294 sum 3.662 -16.913 -12.590 21.400 Atomic orbital electron populations 1.21809 0.95119 1.01778 1.02475 1.21541 0.96750 0.94967 1.02105 1.21413 0.90562 0.98063 1.00841 0.88674 1.21926 1.02375 1.00840 0.96080 1.22198 0.95951 0.92258 0.90925 0.85933 1.45526 1.49780 1.14782 1.28968 1.15904 0.80353 0.80543 0.82752 1.90999 1.45250 1.81598 1.23630 1.46703 1.45104 1.13318 1.26135 1.20388 0.93410 0.81701 0.98785 1.19291 1.06153 1.03255 0.93729 1.20568 0.93967 0.94070 0.98306 1.20186 1.05475 1.05305 0.90711 1.19443 0.89798 0.89276 0.90647 1.83974 1.56380 1.48689 1.18578 1.21315 1.23050 1.22757 0.79786 0.89007 1.25301 0.95030 0.95743 1.00330 1.70031 1.21260 1.22270 1.35934 0.85778 0.78618 0.78768 0.80289 1.19404 1.20210 1.19447 1.21151 1.02470 1.01664 1.00518 1.20708 0.96498 0.96494 0.92388 1.20744 0.77757 0.89734 0.80390 1.90786 1.57743 1.44984 1.40216 0.92074 0.92484 0.92635 0.91607 0.91731 0.92201 0.91390 0.92097 0.71970 0.88712 0.88883 0.86802 0.86457 0.91880 0.85504 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.67 37.15 0.36 -0.63 16 2 C -0.12 -0.69 5.25 -26.73 -0.14 -0.83 16 3 C -0.09 -0.73 2.32 -90.62 -0.21 -0.94 16 4 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 5 C -0.15 -1.73 8.42 37.16 0.31 -1.42 16 6 C 0.10 0.81 3.44 -68.21 -0.23 0.57 16 7 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 8 N -0.73 -6.54 5.06 -59.19 -0.30 -6.84 16 9 C 0.70 9.32 8.53 -88.02 -0.75 8.57 16 10 O -0.54 -8.98 17.48 5.33 0.09 -8.88 16 11 N -0.57 -7.52 2.59 -122.03 -0.32 -7.83 16 12 C 0.18 2.47 5.82 -5.19 -0.03 2.44 16 13 C -0.22 -3.87 5.47 -104.58 -0.57 -4.44 16 14 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 15 C -0.20 -4.23 9.99 -39.39 -0.39 -4.62 16 16 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 17 O -0.17 -4.97 9.76 0.05 0.00 -4.97 16 18 C -0.39 -11.02 9.49 30.88 0.29 -10.72 16 19 H 0.09 2.39 5.20 -52.48 -0.27 2.12 16 20 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 21 N -0.86 -25.18 13.67 55.48 0.76 -24.42 16 22 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 C -0.24 -5.29 9.17 -39.39 -0.36 -5.66 16 27 C -0.04 -0.81 9.69 -39.61 -0.38 -1.19 16 28 C 0.53 6.46 6.46 -10.56 -0.07 6.39 16 29 O -0.47 -6.80 17.76 5.60 0.10 -6.70 16 30 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.37 7.61 -51.93 -0.40 -0.03 16 35 H 0.06 0.85 7.28 -51.93 -0.38 0.47 16 36 H 0.07 0.71 6.57 -51.93 -0.34 0.37 16 37 H 0.06 0.71 7.51 -51.93 -0.39 0.32 16 38 H 0.44 2.89 8.54 -40.82 -0.35 2.54 16 39 H 0.09 1.26 7.80 -51.93 -0.40 0.85 16 40 H 0.09 1.17 7.94 -51.93 -0.41 0.76 16 41 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 42 H 0.12 2.44 8.06 -52.48 -0.42 2.02 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 45 H 0.11 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 376.58 15.07 5.68 5.68 Total: -1.00 -33.14 376.58 -8.03 -41.17 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -6.10 Total: 6.32 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -2.92 Total: -9.05 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.14 Total: -39.09 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: 0.19 Total: -20.55 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.14 -8.03 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272507635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.214 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds