Wall clock time and date at job start Tue Mar 31 2020 17:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46843 * 2 1 4 4 H 1.08992 * 109.47398 * 304.99887 * 3 2 1 5 5 C 1.52995 * 109.47075 * 65.00246 * 3 2 1 6 6 C 1.53003 * 109.47117 * 184.99821 * 3 2 1 7 7 H 1.08997 * 110.65802 * 57.08912 * 6 3 2 8 8 N 1.47312 * 110.59914 * 294.17466 * 6 3 2 9 9 C 1.34523 * 106.62156 * 241.25219 * 8 6 3 10 10 O 1.21539 * 123.77520 * 180.21044 * 9 8 6 11 11 N 1.33799 * 112.45621 * 0.37805 * 9 8 6 12 12 C 1.46498 * 124.17920 * 179.86227 * 11 9 8 13 13 C 1.50700 * 109.47452 * 269.70859 * 12 11 9 14 14 C 1.38308 * 119.92622 * 269.72788 * 13 12 11 15 15 C 1.38101 * 120.06568 * 179.72486 * 14 13 12 16 16 C 1.38878 * 119.93104 * 0.54436 * 15 14 13 17 17 O 1.35754 * 120.07164 * 179.75199 * 16 15 14 18 18 C 1.34826 * 117.00189 * 174.44468 * 17 16 15 19 19 H 1.08004 * 120.00037 * 5.04820 * 18 17 16 20 20 C 1.38649 * 119.99902 * 185.05667 * 18 17 16 21 21 N 1.31560 * 120.00088 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99965 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47256 * 59.99992 * 22 20 18 24 24 H 1.48507 * 109.47441 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47553 * 299.99991 * 22 20 18 26 26 C 1.38883 * 119.86394 * 359.72457 * 16 15 14 27 27 C 1.38108 * 119.92646 * 0.02562 * 26 16 15 28 28 C 1.34766 * 111.63955 * 359.60287 * 11 9 8 29 29 O 1.21236 * 127.15368 * 180.19055 * 28 11 9 30 30 H 1.08992 * 109.47453 * 299.99517 * 1 2 3 31 31 H 1.09006 * 109.46961 * 60.00549 * 1 2 3 32 32 H 1.08996 * 109.46748 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47730 * 240.00500 * 2 1 3 34 34 H 1.08995 * 109.47385 * 119.99721 * 2 1 3 35 35 H 1.09000 * 109.47462 * 180.02562 * 5 3 2 36 36 H 1.09005 * 109.47206 * 299.99930 * 5 3 2 37 37 H 1.09002 * 109.47307 * 59.99568 * 5 3 2 38 38 H 0.97003 * 126.68822 * 61.44090 * 8 6 3 39 39 H 1.09005 * 109.46735 * 29.70583 * 12 11 9 40 40 H 1.08995 * 109.47337 * 149.70495 * 12 11 9 41 41 H 1.07995 * 119.96485 * 359.97438 * 14 13 12 42 42 H 1.08003 * 120.03446 * 180.27526 * 15 14 13 43 43 H 0.96999 * 120.00102 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.03871 * 180.02562 * 26 16 15 45 45 H 1.07999 * 119.96006 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6351 2.1265 1.3073 6 6 3.5647 1.4444 -0.1257 7 1 3.8770 0.9159 -1.0263 8 7 4.1840 0.8441 1.0686 9 6 4.9470 1.8002 1.6282 10 8 5.6053 1.6353 2.6365 11 7 4.8975 2.9541 0.9528 12 6 5.6273 4.1648 1.3374 13 6 4.7694 4.9987 2.2538 14 6 3.9265 5.9595 1.7253 15 6 3.1349 6.7213 2.5620 16 6 3.1942 6.5297 3.9362 17 8 2.4211 7.2805 4.7618 18 6 2.4409 6.9663 6.0728 19 1 3.1142 6.2035 6.4351 20 6 1.5969 7.6224 6.9557 21 7 0.7771 8.5518 6.5143 22 14 1.6239 7.1866 8.7719 23 1 2.9811 7.4359 9.3207 24 1 0.6357 8.0251 9.4970 25 1 1.2768 5.7529 8.9422 26 6 4.0458 5.5680 4.4643 27 6 4.8311 4.8057 3.6218 28 6 4.0979 2.8634 -0.1282 29 8 3.8550 3.7354 -0.9346 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.9980 3.1543 1.3072 36 1 0.5488 2.1252 1.3970 37 1 2.0698 1.5875 2.1492 38 1 4.0667 -0.0645 1.3875 39 1 6.5463 3.8866 1.8533 40 1 5.8717 4.7407 0.4448 41 1 3.8844 6.1112 0.6569 42 1 2.4736 7.4684 2.1484 43 1 0.1868 9.0110 7.1321 44 1 4.0938 5.4163 5.5325 45 1 5.4931 4.0574 4.0318 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272507635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:07 Heat of formation + Delta-G solvation = -76.766039 kcal Electronic energy + Delta-G solvation = -29006.911045 eV Core-core repulsion = 24989.865876 eV Total energy + Delta-G solvation = -4017.045170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.52972 -40.84656 -39.63337 -38.73682 -38.03391 -36.63133 -35.05925 -34.28680 -31.91198 -31.62549 -30.83384 -28.38881 -27.87367 -26.83853 -25.15308 -23.92753 -23.47020 -22.62399 -21.26005 -20.92015 -19.90472 -19.03840 -18.87478 -18.16017 -17.48010 -16.68876 -16.59630 -16.43603 -16.37278 -16.13272 -15.75087 -15.58559 -15.49918 -15.22870 -15.11700 -14.81683 -14.50000 -14.29522 -14.27611 -13.67563 -13.19026 -13.11475 -13.09765 -13.00270 -12.78203 -12.63726 -12.52972 -12.38473 -12.30269 -12.17339 -12.02577 -11.64031 -11.50030 -11.25306 -11.10032 -10.84649 -10.82340 -10.36347 -9.87662 -9.07252 -8.51479 -6.20331 0.41886 0.51572 0.64157 1.32712 1.35542 1.46017 1.48967 2.02436 2.14686 2.24744 2.76716 2.98468 3.11515 3.42879 3.49819 3.74687 3.88105 3.90685 3.97740 4.09339 4.16602 4.31481 4.39882 4.49477 4.53866 4.55327 4.57368 4.66466 4.68161 4.69825 4.77280 4.97283 5.01071 5.08325 5.10038 5.11864 5.19774 5.23627 5.40097 5.47176 5.51686 5.63244 5.66980 5.87309 5.97203 6.09892 6.10587 6.41913 6.92636 7.16175 7.70443 8.71018 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.003268 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.082546 B = 8566.409404 C = 9218.015248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.110 4.110 3 C -0.082 4.082 4 H 0.099 0.901 5 C -0.153 4.153 6 C 0.106 3.894 7 H 0.169 0.831 8 N -0.703 5.703 9 C 0.699 3.301 10 O -0.578 6.578 11 N -0.573 5.573 12 C 0.175 3.825 13 C -0.193 4.193 14 C -0.041 4.041 15 C -0.205 4.205 16 C 0.128 3.872 17 O -0.226 6.226 18 C -0.418 4.418 19 H 0.100 0.900 20 C -0.018 4.018 21 N -0.917 5.917 22 Si 1.017 2.983 23 H -0.257 1.257 24 H -0.269 1.269 25 H -0.258 1.258 26 C -0.245 4.245 27 C -0.041 4.041 28 C 0.521 3.479 29 O -0.491 6.491 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.023 0.977 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.450 0.550 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.141 0.859 42 H 0.115 0.885 43 H 0.274 0.726 44 H 0.118 0.882 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.026 -20.493 -15.732 26.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C -0.101 4.101 4 H 0.117 0.883 5 C -0.211 4.211 6 C -0.002 4.002 7 H 0.186 0.814 8 N -0.369 5.369 9 C 0.400 3.600 10 O -0.455 6.455 11 N -0.318 5.318 12 C 0.055 3.945 13 C -0.195 4.195 14 C -0.060 4.060 15 C -0.224 4.224 16 C 0.077 3.923 17 O -0.132 6.132 18 C -0.494 4.494 19 H 0.117 0.883 20 C -0.217 4.217 21 N -0.554 5.554 22 Si 0.836 3.164 23 H -0.181 1.181 24 H -0.193 1.193 25 H -0.183 1.183 26 C -0.264 4.264 27 C -0.060 4.060 28 C 0.310 3.690 29 O -0.362 6.362 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.297 0.703 39 H 0.126 0.874 40 H 0.133 0.867 41 H 0.159 0.841 42 H 0.133 0.867 43 H 0.083 0.917 44 H 0.136 0.864 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.990 -19.683 -15.605 25.610 hybrid contribution -0.342 0.255 1.375 1.440 sum 4.649 -19.428 -14.230 24.526 Atomic orbital electron populations 1.21830 0.95634 1.02242 1.01781 1.21532 0.96227 0.93208 1.03741 1.21399 0.90267 0.99498 0.98957 0.88265 1.21900 1.02424 0.98892 0.97858 1.22382 0.95704 0.90019 0.92080 0.81438 1.45436 1.48168 1.14688 1.28565 1.16044 0.80559 0.81034 0.82395 1.90981 1.47035 1.82196 1.25269 1.46622 1.45442 1.13067 1.26673 1.20413 0.93005 0.82019 0.99046 1.19747 1.04232 1.01799 0.93707 1.20834 0.92834 0.93131 0.99182 1.20413 1.06105 1.05830 0.90086 1.19908 0.90556 0.90408 0.91476 1.83944 1.58954 1.51134 1.19169 1.21784 1.23848 1.23467 0.80278 0.88258 1.26577 0.94232 0.95348 1.05494 1.70171 1.23024 1.24343 1.37906 0.84676 0.79244 0.78950 0.73540 1.18120 1.19297 1.18278 1.21215 1.02779 1.01773 1.00667 1.20894 0.96034 0.96138 0.92938 1.21359 0.77066 0.91102 0.79504 1.90780 1.58352 1.46182 1.40898 0.93675 0.92354 0.91618 0.88874 0.91148 0.95748 0.91277 0.92843 0.70259 0.87450 0.86695 0.84142 0.86662 0.91662 0.86375 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.67 71.98 0.70 -0.91 16 2 C -0.11 -0.87 5.25 30.59 0.16 -0.71 16 3 C -0.08 -1.08 2.32 -10.79 -0.03 -1.10 16 4 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 5 C -0.15 -3.27 8.42 71.98 0.61 -2.66 16 6 C 0.11 1.36 3.44 44.37 0.15 1.51 16 7 H 0.17 0.87 8.14 -2.39 -0.02 0.85 16 8 N -0.70 -10.20 5.06 -459.61 -2.32 -12.52 16 9 C 0.70 16.70 8.53 179.44 1.53 18.23 16 10 O -0.58 -18.06 17.48 -3.84 -0.07 -18.12 16 11 N -0.57 -13.65 2.59 -777.22 -2.01 -15.66 16 12 C 0.18 4.42 5.82 85.63 0.50 4.92 16 13 C -0.19 -6.42 5.47 -19.83 -0.11 -6.53 16 14 C -0.04 -1.47 9.69 22.25 0.22 -1.26 16 15 C -0.21 -9.05 9.99 22.39 0.22 -8.82 16 16 C 0.13 6.54 6.65 22.58 0.15 6.69 16 17 O -0.23 -13.83 9.76 -22.75 -0.22 -14.06 16 18 C -0.42 -24.76 9.49 67.92 0.64 -24.11 16 19 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 20 C -0.02 -1.05 5.49 84.83 0.47 -0.59 16 21 N -0.92 -56.55 13.67 21.61 0.30 -56.26 16 22 Si 1.02 43.32 29.55 68.60 2.03 45.34 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 25 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 26 C -0.25 -11.22 9.17 22.39 0.21 -11.01 16 27 C -0.04 -1.56 9.69 22.25 0.22 -1.35 16 28 C 0.52 11.20 6.46 87.94 0.57 11.77 16 29 O -0.49 -12.93 17.76 -2.89 -0.05 -12.99 16 30 H 0.04 0.60 6.56 -2.39 -0.02 0.58 16 31 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.07 0.52 7.61 -2.39 -0.02 0.50 16 35 H 0.02 0.67 7.28 -2.39 -0.02 0.65 16 36 H 0.07 1.43 6.57 -2.38 -0.02 1.41 16 37 H 0.05 1.19 7.51 -2.39 -0.02 1.17 16 38 H 0.45 4.22 8.54 -92.71 -0.79 3.43 16 39 H 0.11 2.53 7.80 -2.38 -0.02 2.51 16 40 H 0.11 2.47 7.94 -2.39 -0.02 2.45 16 41 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 42 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16 43 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.12 5.53 5.64 -2.91 -0.02 5.51 16 45 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -78.10 376.58 4.08 -74.01 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.24 Total: 26.18 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 6.20 Total: -15.93 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -4.04 Total: -84.44 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -0.34 Total: -45.17 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -78.10 4.08 -74.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272507635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.755 kcal (2) G-P(sol) polarization free energy of solvation -78.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds