Wall clock time and date at job start Tue Mar 31 2020 17:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46950 * 2 1 4 4 H 1.09002 * 109.47290 * 55.00187 * 3 2 1 5 5 C 1.52995 * 109.47562 * 294.99679 * 3 2 1 6 6 C 1.53001 * 109.46953 * 174.99596 * 3 2 1 7 7 H 1.08998 * 110.53590 * 303.62151 * 6 3 2 8 8 N 1.47313 * 110.59970 * 66.45549 * 6 3 2 9 9 C 1.34529 * 106.62026 * 118.52564 * 8 6 3 10 10 O 1.21530 * 123.77168 * 180.02562 * 9 8 6 11 11 N 1.33791 * 112.45580 * 359.97438 * 9 8 6 12 12 C 1.46507 * 124.17722 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.46965 * 89.97169 * 12 11 9 14 14 C 1.38301 * 119.93313 * 269.72808 * 13 12 11 15 15 C 1.38100 * 120.06628 * 179.72901 * 14 13 12 16 16 C 1.38885 * 119.93125 * 0.56860 * 15 14 13 17 17 O 1.35749 * 120.06595 * 179.68433 * 16 15 14 18 18 C 1.34832 * 116.99721 * 174.49145 * 17 16 15 19 19 H 1.08004 * 120.00161 * 5.05202 * 18 17 16 20 20 C 1.38654 * 120.00301 * 185.05834 * 18 17 16 21 21 N 1.31562 * 119.99468 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00246 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47219 * 89.99687 * 22 20 18 24 24 H 1.48506 * 109.47038 * 209.99685 * 22 20 18 25 25 H 1.48500 * 109.47147 * 329.99602 * 22 20 18 26 26 C 1.38874 * 119.85947 * 359.70925 * 16 15 14 27 27 C 1.38101 * 119.93317 * 359.97438 * 26 16 15 28 28 C 1.34770 * 111.64732 * 0.02562 * 11 9 8 29 29 O 1.21228 * 127.15709 * 180.02562 * 28 11 9 30 30 H 1.09004 * 109.46744 * 60.00269 * 1 2 3 31 31 H 1.09003 * 109.46940 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47413 * 300.00119 * 1 2 3 33 33 H 1.09000 * 109.47413 * 239.99881 * 2 1 3 34 34 H 1.09004 * 109.46744 * 119.99731 * 2 1 3 35 35 H 1.08990 * 109.47503 * 180.02562 * 5 3 2 36 36 H 1.09002 * 109.47233 * 300.00543 * 5 3 2 37 37 H 1.08999 * 109.46819 * 59.99655 * 5 3 2 38 38 H 0.96993 * 126.68683 * 298.56397 * 8 6 3 39 39 H 1.09001 * 109.46769 * 209.97992 * 12 11 9 40 40 H 1.09003 * 109.46710 * 329.97372 * 12 11 9 41 41 H 1.07997 * 119.96360 * 359.97438 * 14 13 12 42 42 H 1.08001 * 120.03306 * 180.26992 * 15 14 13 43 43 H 0.97000 * 119.99349 * 179.97438 * 21 20 18 44 44 H 1.08006 * 120.03397 * 179.97438 * 26 16 15 45 45 H 1.08007 * 119.96181 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5648 1.4443 0.1258 7 1 3.8752 0.9046 1.0204 8 7 4.1846 0.8576 -1.0749 9 6 4.9430 1.8220 -1.6267 10 8 5.5971 1.6703 -2.6397 11 7 4.8958 2.9670 -0.9363 12 6 5.6234 4.1830 -1.3084 13 6 4.7643 5.0243 -2.2167 14 6 4.8308 4.8488 -3.5870 15 6 4.0406 5.6144 -4.4216 16 6 3.1873 6.5695 -3.8844 17 8 2.4141 7.3279 -4.7027 18 6 1.5267 8.1546 -4.1134 19 1 1.5113 8.2522 -3.0379 20 6 0.6339 8.8794 -4.8881 21 7 0.6530 8.7608 -6.1982 22 14 -0.5958 10.0241 -4.0717 23 1 0.0012 11.3771 -3.9368 24 1 -1.8238 10.1055 -4.9029 25 1 -0.9426 9.4997 -2.7263 26 6 3.1271 6.7472 -2.5084 27 6 3.9150 5.9739 -1.6786 28 6 4.0963 2.8638 0.1437 29 8 3.8524 3.7268 0.9594 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 1.9990 3.1540 -1.3075 36 1 2.0699 1.5875 -2.1491 37 1 0.5490 2.1252 -1.3969 38 1 4.0681 -0.0474 -1.4037 39 1 5.8665 4.7502 -0.4099 40 1 6.5432 3.9118 -1.8267 41 1 5.4984 4.1096 -4.0044 42 1 4.0897 5.4739 -5.4914 43 1 0.0282 9.2676 -6.7402 44 1 2.4648 7.4893 -2.0876 45 1 3.8683 6.1115 -0.6084 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272507637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:13 Heat of formation + Delta-G solvation = -55.448290 kcal Electronic energy + Delta-G solvation = -29027.405434 eV Core-core repulsion = 25011.284671 eV Total energy + Delta-G solvation = -4016.120763 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.55573 -39.07156 -38.58242 -37.53290 -36.66614 -35.56307 -34.05362 -32.33868 -30.28687 -30.15754 -30.08391 -27.45738 -26.30147 -25.15953 -24.27964 -22.87411 -21.89352 -21.19630 -20.32904 -19.97956 -18.08070 -17.95380 -17.31256 -16.88863 -16.50269 -15.73905 -15.55540 -15.14562 -14.93773 -14.62779 -14.54230 -14.32026 -14.28207 -13.92938 -13.65753 -13.57133 -13.43641 -12.78528 -12.65482 -12.49368 -12.28226 -12.00953 -11.92374 -11.59087 -11.52694 -11.42631 -11.19326 -11.16320 -10.96600 -10.94445 -10.67520 -10.63864 -10.45508 -10.12570 -9.68150 -9.49906 -9.36333 -8.87584 -8.19942 -7.27622 -6.49309 -4.07936 1.60446 1.90465 2.22042 2.54609 3.04266 3.08078 3.11439 3.12282 3.16688 3.85422 3.93682 4.22279 4.43834 4.54561 4.63220 4.80801 4.98568 5.05554 5.11907 5.21831 5.23347 5.30960 5.34905 5.36853 5.49887 5.51815 5.67316 5.72542 5.75481 5.75844 5.82164 5.83988 5.89568 6.02835 6.20397 6.21587 6.39778 6.64902 6.69430 6.87532 7.00908 7.07075 7.22776 7.34741 7.37316 7.41174 7.78799 7.95914 8.12391 8.96158 9.65222 10.68354 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012522 B = 0.003410 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.499238 B = 8209.219625 C = 9261.578033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.090 4.090 4 H 0.095 0.905 5 C -0.155 4.155 6 C 0.096 3.904 7 H 0.123 0.877 8 N -0.726 5.726 9 C 0.704 3.296 10 O -0.542 6.542 11 N -0.567 5.567 12 C 0.176 3.824 13 C -0.222 4.222 14 C -0.046 4.046 15 C -0.198 4.198 16 C 0.163 3.837 17 O -0.174 6.174 18 C -0.393 4.393 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.941 3.059 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.239 4.239 27 C -0.047 4.047 28 C 0.527 3.473 29 O -0.467 6.467 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.436 0.564 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.271 0.729 44 H 0.127 0.873 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.627 -17.069 14.184 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.109 4.109 4 H 0.113 0.887 5 C -0.212 4.212 6 C -0.013 4.013 7 H 0.141 0.859 8 N -0.391 5.391 9 C 0.405 3.595 10 O -0.415 6.415 11 N -0.313 5.313 12 C 0.057 3.943 13 C -0.224 4.224 14 C -0.064 4.064 15 C -0.217 4.217 16 C 0.109 3.891 17 O -0.076 6.076 18 C -0.469 4.469 19 H 0.110 0.890 20 C -0.164 4.164 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.258 4.258 27 C -0.066 4.066 28 C 0.314 3.686 29 O -0.337 6.337 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.280 0.720 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.145 0.855 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.770 -16.429 13.612 21.666 hybrid contribution -0.762 0.229 0.264 0.839 sum 3.008 -16.200 13.877 21.542 Atomic orbital electron populations 1.21813 0.95121 1.01772 1.02485 1.21543 0.96750 0.94952 1.02101 1.21419 0.90589 0.98068 1.00856 0.88686 1.21922 1.02380 1.00842 0.96069 1.22198 0.95936 0.92426 0.90772 0.85913 1.45525 1.50009 1.14901 1.28619 1.15894 0.80315 0.80512 0.82787 1.90994 1.45414 1.81716 1.23380 1.46707 1.45172 1.13587 1.25813 1.20391 0.93439 0.81482 0.98969 1.19293 1.05966 1.03448 0.93719 1.20601 0.96736 0.96771 0.92334 1.20212 1.01885 0.99842 0.99750 1.19442 0.90505 0.89535 0.89656 1.83979 1.43748 1.46705 1.33217 1.21359 1.12050 1.20515 0.92953 0.88966 1.25307 0.97655 0.98003 0.95476 1.70045 1.35938 1.39503 1.03972 0.85709 0.79156 0.79704 0.78876 1.19789 1.20191 1.19131 1.21128 1.05890 1.05466 0.93299 1.20678 0.93681 0.93769 0.98434 1.20744 0.77747 0.89670 0.80487 1.90788 1.57637 1.45655 1.39598 0.92080 0.92630 0.92480 0.91730 0.91607 0.92212 0.92094 0.91384 0.71975 0.88914 0.88674 0.86557 0.86451 0.91935 0.85500 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.67 37.16 0.36 -0.64 16 2 C -0.12 -0.70 5.26 -26.73 -0.14 -0.84 16 3 C -0.09 -0.74 2.31 -90.62 -0.21 -0.95 16 4 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 5 C -0.15 -1.74 8.41 37.16 0.31 -1.43 16 6 C 0.10 0.81 3.43 -68.20 -0.23 0.58 16 7 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 8 N -0.73 -6.49 5.05 -59.19 -0.30 -6.79 16 9 C 0.70 9.24 8.52 -88.02 -0.75 8.49 16 10 O -0.54 -8.86 17.48 5.34 0.09 -8.76 16 11 N -0.57 -7.52 2.59 -122.02 -0.32 -7.84 16 12 C 0.18 2.47 5.82 -5.19 -0.03 2.44 16 13 C -0.22 -3.87 5.47 -104.58 -0.57 -4.44 16 14 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 15 C -0.20 -4.28 9.99 -39.39 -0.39 -4.67 16 16 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 17 O -0.17 -4.98 9.76 0.05 0.00 -4.98 16 18 C -0.39 -10.97 9.49 30.89 0.29 -10.68 16 19 H 0.09 2.39 5.20 -52.48 -0.27 2.12 16 20 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 21 N -0.86 -25.16 13.67 55.48 0.76 -24.40 16 22 Si 0.94 20.47 29.55 -169.99 -5.02 15.44 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 26 C -0.24 -5.23 9.17 -39.40 -0.36 -5.60 16 27 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 28 C 0.53 6.52 6.49 -10.55 -0.07 6.45 16 29 O -0.47 -6.91 17.76 5.60 0.10 -6.81 16 30 H 0.06 0.45 6.57 -51.93 -0.34 0.11 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.37 7.64 -51.93 -0.40 -0.03 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.86 7.30 -51.93 -0.38 0.48 16 36 H 0.06 0.71 7.50 -51.93 -0.39 0.32 16 37 H 0.07 0.72 6.56 -51.93 -0.34 0.38 16 38 H 0.44 2.85 8.56 -40.82 -0.35 2.50 16 39 H 0.09 1.18 7.95 -51.93 -0.41 0.77 16 40 H 0.09 1.25 7.80 -51.93 -0.41 0.84 16 41 H 0.12 2.02 8.06 -52.49 -0.42 1.59 16 42 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 43 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.13 2.80 5.64 -52.48 -0.30 2.51 16 45 H 0.11 1.89 8.06 -52.48 -0.42 1.46 16 LS Contribution 376.64 15.07 5.68 5.68 Total: -1.00 -33.12 376.64 -8.03 -41.15 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.10 Total: 6.36 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -2.92 Total: -9.05 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.14 Total: -39.03 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.19 Total: -20.55 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.12 -8.03 -41.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272507637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.302 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds