Wall clock time and date at job start Tue Mar 31 2020 17:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46950 * 2 1 4 4 H 1.09002 * 109.47290 * 55.00187 * 3 2 1 5 5 C 1.52995 * 109.47562 * 294.99679 * 3 2 1 6 6 C 1.53001 * 109.46953 * 174.99596 * 3 2 1 7 7 H 1.08998 * 110.53590 * 303.62151 * 6 3 2 8 8 N 1.47313 * 110.59970 * 66.45549 * 6 3 2 9 9 C 1.34529 * 106.62026 * 118.52564 * 8 6 3 10 10 O 1.21530 * 123.77168 * 180.02562 * 9 8 6 11 11 N 1.33791 * 112.45580 * 359.97438 * 9 8 6 12 12 C 1.46507 * 124.17722 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.46965 * 89.97169 * 12 11 9 14 14 C 1.38301 * 119.93313 * 269.72808 * 13 12 11 15 15 C 1.38100 * 120.06628 * 179.72901 * 14 13 12 16 16 C 1.38885 * 119.93125 * 0.56860 * 15 14 13 17 17 O 1.35749 * 120.06595 * 179.68433 * 16 15 14 18 18 C 1.34832 * 116.99721 * 174.49145 * 17 16 15 19 19 H 1.08004 * 120.00161 * 5.05202 * 18 17 16 20 20 C 1.38654 * 120.00301 * 185.05834 * 18 17 16 21 21 N 1.31562 * 119.99468 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00246 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47219 * 89.99687 * 22 20 18 24 24 H 1.48506 * 109.47038 * 209.99685 * 22 20 18 25 25 H 1.48500 * 109.47147 * 329.99602 * 22 20 18 26 26 C 1.38874 * 119.85947 * 359.70925 * 16 15 14 27 27 C 1.38101 * 119.93317 * 359.97438 * 26 16 15 28 28 C 1.34770 * 111.64732 * 0.02562 * 11 9 8 29 29 O 1.21228 * 127.15709 * 180.02562 * 28 11 9 30 30 H 1.09004 * 109.46744 * 60.00269 * 1 2 3 31 31 H 1.09003 * 109.46940 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47413 * 300.00119 * 1 2 3 33 33 H 1.09000 * 109.47413 * 239.99881 * 2 1 3 34 34 H 1.09004 * 109.46744 * 119.99731 * 2 1 3 35 35 H 1.08990 * 109.47503 * 180.02562 * 5 3 2 36 36 H 1.09002 * 109.47233 * 300.00543 * 5 3 2 37 37 H 1.08999 * 109.46819 * 59.99655 * 5 3 2 38 38 H 0.96993 * 126.68683 * 298.56397 * 8 6 3 39 39 H 1.09001 * 109.46769 * 209.97992 * 12 11 9 40 40 H 1.09003 * 109.46710 * 329.97372 * 12 11 9 41 41 H 1.07997 * 119.96360 * 359.97438 * 14 13 12 42 42 H 1.08001 * 120.03306 * 180.26992 * 15 14 13 43 43 H 0.97000 * 119.99349 * 179.97438 * 21 20 18 44 44 H 1.08006 * 120.03397 * 179.97438 * 26 16 15 45 45 H 1.08007 * 119.96181 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5648 1.4443 0.1258 7 1 3.8752 0.9046 1.0204 8 7 4.1846 0.8576 -1.0749 9 6 4.9430 1.8220 -1.6267 10 8 5.5971 1.6703 -2.6397 11 7 4.8958 2.9670 -0.9363 12 6 5.6234 4.1830 -1.3084 13 6 4.7643 5.0243 -2.2167 14 6 4.8308 4.8488 -3.5870 15 6 4.0406 5.6144 -4.4216 16 6 3.1873 6.5695 -3.8844 17 8 2.4141 7.3279 -4.7027 18 6 1.5267 8.1546 -4.1134 19 1 1.5113 8.2522 -3.0379 20 6 0.6339 8.8794 -4.8881 21 7 0.6530 8.7608 -6.1982 22 14 -0.5958 10.0241 -4.0717 23 1 0.0012 11.3771 -3.9368 24 1 -1.8238 10.1055 -4.9029 25 1 -0.9426 9.4997 -2.7263 26 6 3.1271 6.7472 -2.5084 27 6 3.9150 5.9739 -1.6786 28 6 4.0963 2.8638 0.1437 29 8 3.8524 3.7268 0.9594 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 1.9990 3.1540 -1.3075 36 1 2.0699 1.5875 -2.1491 37 1 0.5490 2.1252 -1.3969 38 1 4.0681 -0.0474 -1.4037 39 1 5.8665 4.7502 -0.4099 40 1 6.5432 3.9118 -1.8267 41 1 5.4984 4.1096 -4.0044 42 1 4.0897 5.4739 -5.4914 43 1 0.0282 9.2676 -6.7402 44 1 2.4648 7.4893 -2.0876 45 1 3.8683 6.1115 -0.6084 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272507637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:12 Heat of formation + Delta-G solvation = -76.802952 kcal Electronic energy + Delta-G solvation = -29028.331442 eV Core-core repulsion = 25011.284671 eV Total energy + Delta-G solvation = -4017.046770 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.53028 -40.84794 -39.63663 -38.73874 -38.03641 -36.63193 -35.05840 -34.28510 -31.92357 -31.61434 -30.83015 -28.39754 -27.87304 -26.84260 -25.13764 -23.95985 -23.46063 -22.60062 -21.28907 -20.90942 -19.90494 -19.10161 -18.78468 -18.18048 -17.50061 -16.67585 -16.60913 -16.41914 -16.37207 -16.13710 -15.74743 -15.58466 -15.49933 -15.22576 -15.12829 -14.81023 -14.52201 -14.30639 -14.25455 -13.67939 -13.19939 -13.12984 -13.06570 -13.01410 -12.78558 -12.64674 -12.54788 -12.36065 -12.30474 -12.14981 -12.02619 -11.64186 -11.50104 -11.24757 -11.10385 -10.84805 -10.82694 -10.36269 -9.87780 -9.07246 -8.51356 -6.20199 0.41836 0.51466 0.63971 1.33128 1.35297 1.45370 1.50889 2.02605 2.14740 2.24509 2.76836 2.98455 3.11628 3.42921 3.49644 3.74513 3.87755 3.90726 3.97470 4.08675 4.16577 4.31247 4.40499 4.48900 4.53833 4.55023 4.56917 4.66495 4.68054 4.70801 4.75982 4.97569 5.00846 5.08465 5.10045 5.11548 5.19876 5.23377 5.39814 5.47582 5.51532 5.62780 5.66648 5.87615 5.97457 6.09958 6.10574 6.41679 6.92864 7.16498 7.70942 8.71493 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012522 B = 0.003410 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.499238 B = 8209.219625 C = 9261.578033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.109 4.109 3 C -0.082 4.082 4 H 0.098 0.902 5 C -0.153 4.153 6 C 0.107 3.893 7 H 0.169 0.831 8 N -0.703 5.703 9 C 0.699 3.301 10 O -0.577 6.577 11 N -0.573 5.573 12 C 0.175 3.825 13 C -0.193 4.193 14 C -0.040 4.040 15 C -0.207 4.207 16 C 0.128 3.872 17 O -0.227 6.227 18 C -0.417 4.417 19 H 0.102 0.898 20 C -0.019 4.019 21 N -0.918 5.918 22 Si 1.018 2.982 23 H -0.262 1.262 24 H -0.269 1.269 25 H -0.254 1.254 26 C -0.243 4.243 27 C -0.043 4.043 28 C 0.521 3.479 29 O -0.492 6.492 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.022 0.978 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.450 0.550 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.137 0.863 42 H 0.113 0.887 43 H 0.274 0.726 44 H 0.120 0.880 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.109 -19.493 17.567 26.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C -0.102 4.102 4 H 0.116 0.884 5 C -0.211 4.211 6 C -0.002 4.002 7 H 0.186 0.814 8 N -0.368 5.368 9 C 0.400 3.600 10 O -0.453 6.453 11 N -0.318 5.318 12 C 0.055 3.945 13 C -0.195 4.195 14 C -0.058 4.058 15 C -0.226 4.226 16 C 0.077 3.923 17 O -0.133 6.133 18 C -0.493 4.493 19 H 0.119 0.881 20 C -0.217 4.217 21 N -0.555 5.555 22 Si 0.837 3.163 23 H -0.186 1.186 24 H -0.194 1.194 25 H -0.177 1.177 26 C -0.262 4.262 27 C -0.061 4.061 28 C 0.309 3.691 29 O -0.363 6.363 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.298 0.702 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.155 0.845 42 H 0.131 0.869 43 H 0.083 0.917 44 H 0.138 0.862 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.266 -18.928 17.047 25.828 hybrid contribution -0.707 0.735 -0.637 1.202 sum 3.560 -18.194 16.410 24.758 Atomic orbital electron populations 1.21834 0.95654 1.02251 1.01762 1.21533 0.96210 0.93149 1.03782 1.21404 0.90315 0.99531 0.98938 0.88429 1.21896 1.02416 0.98846 0.97896 1.22373 0.95670 0.90185 0.91937 0.81431 1.45431 1.48409 1.14788 1.28212 1.16026 0.80531 0.80986 0.82428 1.90977 1.47139 1.82292 1.24939 1.46628 1.45489 1.13357 1.26340 1.20416 0.93100 0.81758 0.99208 1.19747 1.04015 1.01905 0.93830 1.20830 0.96073 0.96203 0.92720 1.20414 1.02095 0.99897 1.00220 1.19896 0.91218 0.90532 0.90674 1.83949 1.45697 1.48810 1.34836 1.21836 1.12685 1.21078 0.93657 0.88112 1.26599 0.99499 0.99579 0.96070 1.70186 1.37775 1.41720 1.05858 0.84599 0.76213 0.77300 0.78185 1.18643 1.19386 1.17720 1.21206 1.06411 1.05897 0.92734 1.20898 0.92909 0.93157 0.99184 1.21371 0.77057 0.91049 0.79609 1.90780 1.58306 1.46899 1.40350 0.93663 0.91575 0.92425 0.91043 0.88888 0.95872 0.92667 0.91298 0.70232 0.86924 0.87203 0.84522 0.86885 0.91694 0.86192 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.67 71.98 0.70 -0.93 16 2 C -0.11 -0.87 5.26 30.59 0.16 -0.71 16 3 C -0.08 -1.10 2.31 -10.80 -0.02 -1.13 16 4 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 5 C -0.15 -3.28 8.41 71.98 0.61 -2.67 16 6 C 0.11 1.38 3.43 44.37 0.15 1.53 16 7 H 0.17 0.89 8.14 -2.39 -0.02 0.87 16 8 N -0.70 -10.09 5.05 -459.61 -2.32 -12.41 16 9 C 0.70 16.52 8.52 179.44 1.53 18.05 16 10 O -0.58 -17.70 17.48 -3.81 -0.07 -17.76 16 11 N -0.57 -13.66 2.59 -777.21 -2.01 -15.67 16 12 C 0.18 4.42 5.82 85.63 0.50 4.92 16 13 C -0.19 -6.42 5.47 -19.84 -0.11 -6.53 16 14 C -0.04 -1.46 9.69 22.25 0.22 -1.24 16 15 C -0.21 -9.28 9.99 22.39 0.22 -9.06 16 16 C 0.13 6.55 6.65 22.58 0.15 6.70 16 17 O -0.23 -13.89 9.76 -22.74 -0.22 -14.11 16 18 C -0.42 -24.56 9.49 67.92 0.64 -23.91 16 19 H 0.10 5.48 5.20 -2.91 -0.02 5.46 16 20 C -0.02 -1.11 5.49 84.83 0.47 -0.65 16 21 N -0.92 -56.62 13.67 21.61 0.30 -56.33 16 22 Si 1.02 43.07 29.55 68.60 2.03 45.10 16 23 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 26 C -0.24 -10.96 9.17 22.39 0.21 -10.75 16 27 C -0.04 -1.57 9.69 22.25 0.22 -1.36 16 28 C 0.52 11.35 6.49 87.94 0.57 11.92 16 29 O -0.49 -13.26 17.76 -2.87 -0.05 -13.31 16 30 H 0.04 0.60 6.57 -2.38 -0.02 0.59 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.51 7.64 -2.39 -0.02 0.49 16 34 H 0.09 0.33 8.14 -2.38 -0.02 0.31 16 35 H 0.02 0.64 7.30 -2.39 -0.02 0.63 16 36 H 0.05 1.21 7.50 -2.39 -0.02 1.20 16 37 H 0.07 1.43 6.56 -2.39 -0.02 1.42 16 38 H 0.45 4.11 8.56 -92.71 -0.79 3.32 16 39 H 0.11 2.47 7.95 -2.39 -0.02 2.45 16 40 H 0.11 2.53 7.80 -2.39 -0.02 2.52 16 41 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 42 H 0.11 5.06 8.06 -2.91 -0.02 5.03 16 43 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 44 H 0.12 5.50 5.64 -2.91 -0.02 5.48 16 45 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -78.04 376.64 4.09 -73.96 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.23 Total: 26.35 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 6.20 Total: -15.82 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -4.04 Total: -84.40 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -0.34 Total: -45.18 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -78.04 4.09 -73.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272507637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.844 kcal (2) G-P(sol) polarization free energy of solvation -78.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds