Wall clock time and date at job start Tue Mar 31 2020 17:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47137 * 2 1 4 4 N 1.46498 * 109.47429 * 120.00058 * 2 1 3 5 5 C 1.45655 * 117.70748 * 119.99823 * 4 2 1 6 6 C 1.52985 * 110.77501 * 158.10313 * 5 4 2 7 7 N 1.47270 * 108.18900 * 46.72087 * 6 5 4 8 8 C 1.34777 * 121.34644 * 118.47637 * 7 6 5 9 9 O 1.21588 * 120.00323 * 354.27599 * 8 7 6 10 10 C 1.47537 * 119.99601 * 174.27896 * 8 7 6 11 11 C 1.39671 * 120.19772 * 318.64198 * 10 8 7 12 12 C 1.37828 * 119.91846 * 179.97438 * 11 10 8 13 13 C 1.38578 * 120.32390 * 0.02562 * 12 11 10 14 14 C 1.38024 * 120.40160 * 359.97438 * 13 12 11 15 15 C 1.38836 * 120.07326 * 0.25607 * 14 13 12 16 16 O 1.35513 * 120.16173 * 179.75002 * 15 14 13 17 17 C 1.34819 * 117.00112 * 6.41518 * 16 15 14 18 18 H 1.08004 * 119.99879 * 5.73022 * 17 16 15 19 19 C 1.38698 * 120.00028 * 185.73127 * 17 16 15 20 20 N 1.31522 * 119.99807 * 179.97438 * 19 17 16 21 21 Si 1.86792 * 120.00024 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47620 * 89.99947 * 21 19 17 23 23 H 1.48506 * 109.47089 * 210.00115 * 21 19 17 24 24 H 1.48506 * 109.47269 * 329.99529 * 21 19 17 25 25 C 1.47046 * 117.29732 * 298.75106 * 7 6 5 26 26 C 1.33383 * 117.70303 * 299.97959 * 4 2 1 27 27 O 1.21270 * 118.49045 * 4.31344 * 26 4 2 28 28 H 1.09000 * 109.46747 * 299.99999 * 1 2 3 29 29 H 1.08995 * 109.47163 * 59.99723 * 1 2 3 30 30 H 1.08998 * 109.47385 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47250 * 239.99933 * 2 1 3 32 32 H 1.09000 * 109.47301 * 60.00341 * 3 2 1 33 33 H 1.09005 * 109.46904 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47114 * 299.99670 * 3 2 1 35 35 H 1.08998 * 109.21486 * 37.76631 * 5 4 2 36 36 H 1.09000 * 109.18070 * 278.41493 * 5 4 2 37 37 H 1.09001 * 109.71684 * 287.05252 * 6 5 4 38 38 H 1.09000 * 109.72224 * 166.40436 * 6 5 4 39 39 H 1.08002 * 120.03892 * 359.94954 * 11 10 8 40 40 H 1.07997 * 119.83413 * 179.97438 * 12 11 10 41 41 H 1.08002 * 119.79613 * 180.02562 * 13 12 11 42 42 H 1.07997 * 119.96220 * 179.97438 * 14 13 12 43 43 H 0.97002 * 119.99832 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.57157 * 162.30664 * 25 7 6 45 45 H 1.08999 * 109.56383 * 282.66455 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8520 -1.8695 1.0045 6 6 3.6989 -2.1433 2.2488 7 7 2.8250 -2.0467 3.4302 8 6 2.6261 -3.1030 4.2433 9 8 3.0880 -4.1895 3.9527 10 6 1.8477 -2.9408 5.4861 11 6 2.0246 -1.8075 6.2830 12 6 1.2940 -1.6616 7.4426 13 6 0.3839 -2.6348 7.8232 14 6 0.1984 -3.7600 7.0458 15 6 0.9290 -3.9262 5.8769 16 8 0.7521 -5.0327 5.1149 17 6 -0.2412 -5.8706 5.4738 18 1 -0.9115 -5.6011 6.2766 19 6 -0.4023 -7.0789 4.8120 20 7 -1.3711 -7.8965 5.1625 21 14 0.7573 -7.5454 3.4240 22 1 1.9185 -8.2875 3.9773 23 1 0.0404 -8.4047 2.4477 24 1 1.2349 -6.3150 2.7432 25 6 2.1733 -0.7530 3.6830 26 6 1.6687 -0.1954 2.3842 27 8 0.9052 0.7462 2.4165 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.5101 -1.7086 0.1507 36 1 2.2140 -2.7312 0.8081 37 1 4.4969 -1.4042 2.3203 38 1 4.1277 -3.1436 2.1891 39 1 2.7333 -1.0466 5.9911 40 1 1.4322 -0.7849 8.0580 41 1 -0.1844 -2.5115 8.7334 42 1 -0.5124 -4.5142 7.3493 43 1 -1.4840 -8.7414 4.6995 44 1 1.3379 -0.8929 4.3690 45 1 2.8936 -0.0605 4.1185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272765483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:44 Heat of formation + Delta-G solvation = -46.321696 kcal Electronic energy + Delta-G solvation = -29669.760285 eV Core-core repulsion = 25654.035281 eV Total energy + Delta-G solvation = -4015.725004 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.06173 -39.77612 -38.45488 -36.68184 -36.36493 -35.60812 -32.55597 -32.51636 -30.83781 -29.71840 -29.31015 -27.29944 -27.04668 -25.43604 -24.46944 -23.05987 -21.71547 -21.41176 -20.08783 -18.62926 -18.05313 -17.42304 -17.32585 -16.65878 -16.10847 -15.83171 -15.51358 -15.12514 -14.79926 -14.44915 -14.28226 -14.01654 -13.95717 -13.81305 -13.61122 -13.40838 -13.15686 -12.76849 -12.64986 -12.46652 -12.35110 -12.26878 -12.25282 -11.83298 -11.68782 -11.39913 -11.29539 -11.28813 -11.18106 -10.86733 -10.80241 -10.21565 -9.92465 -9.67930 -9.29192 -8.95820 -8.88475 -8.58490 -8.40693 -7.56074 -6.52717 -4.18908 1.55926 2.10889 2.48407 2.67851 3.00135 3.22769 3.28654 3.31393 3.50590 4.24069 4.27527 4.34331 4.55308 4.63997 4.76357 4.84740 4.88368 5.00343 5.03478 5.08684 5.16610 5.20461 5.32042 5.36959 5.47109 5.54464 5.58282 5.64865 5.67937 5.70264 5.82711 5.84091 6.00600 6.04375 6.21964 6.28855 6.36467 6.48090 6.54712 6.79431 6.92756 7.09893 7.32220 7.39656 7.44803 7.64802 7.88891 8.03718 8.53113 8.81993 9.42526 10.53008 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011453 B = 0.004516 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.080845 B = 6199.199463 C = 7357.400996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.137 3.863 3 C -0.168 4.168 4 N -0.598 5.598 5 C 0.098 3.902 6 C 0.101 3.899 7 N -0.625 5.625 8 C 0.582 3.418 9 O -0.516 6.516 10 C -0.226 4.226 11 C -0.046 4.046 12 C -0.214 4.214 13 C -0.051 4.051 14 C -0.222 4.222 15 C 0.201 3.799 16 O -0.183 6.183 17 C -0.395 4.395 18 H 0.109 0.891 19 C 0.071 3.929 20 N -0.869 5.869 21 Si 0.903 3.097 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.251 1.251 25 C 0.097 3.903 26 C 0.514 3.486 27 O -0.539 6.539 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.139 0.861 43 H 0.282 0.718 44 H 0.129 0.871 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.596 16.098 -7.168 19.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.034 3.966 3 C -0.225 4.225 4 N -0.331 5.331 5 C -0.026 4.026 6 C -0.022 4.022 7 N -0.363 5.363 8 C 0.373 3.627 9 O -0.391 6.391 10 C -0.231 4.231 11 C -0.065 4.065 12 C -0.233 4.233 13 C -0.070 4.070 14 C -0.241 4.241 15 C 0.144 3.856 16 O -0.084 6.084 17 C -0.470 4.470 18 H 0.126 0.874 19 C -0.134 4.134 20 N -0.504 5.504 21 Si 0.728 3.272 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.175 1.175 25 C -0.029 4.029 26 C 0.302 3.698 27 O -0.417 6.417 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.157 0.843 43 H 0.092 0.908 44 H 0.146 0.854 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.446 15.596 -7.542 19.273 hybrid contribution 0.313 -0.451 -0.485 0.732 sum 8.759 15.146 -8.027 19.249 Atomic orbital electron populations 1.22266 0.94528 1.02453 1.03867 1.21113 0.95289 0.93382 0.86807 1.22188 1.00577 0.96067 1.03709 1.47408 1.50806 1.28709 1.06200 1.21864 0.94104 0.87845 0.98804 1.21855 0.92208 1.04798 0.83358 1.48078 1.49014 1.11423 1.27770 1.18219 0.79064 0.82580 0.82825 1.90788 1.49497 1.24621 1.74152 1.18689 1.06914 0.98177 0.99306 1.20847 0.97263 0.94295 0.94077 1.20577 1.02267 1.01204 0.99284 1.20993 0.95546 0.92730 0.97728 1.21289 1.05389 1.00859 0.96582 1.18945 0.91369 0.86311 0.88952 1.83669 1.48911 1.28203 1.47663 1.20866 1.05952 0.98931 1.21244 0.87353 1.24483 0.96718 0.93985 0.98241 1.69633 1.30046 1.10125 1.40637 0.86173 0.80116 0.79741 0.81134 1.19626 1.20955 1.17456 1.22020 1.00040 0.85329 0.95491 1.20250 0.80827 0.83348 0.85417 1.90640 1.34866 1.29078 1.87137 0.89439 0.92116 0.92815 0.89873 0.90141 0.92990 0.91871 0.89571 0.90949 0.90599 0.86991 0.86348 0.86730 0.86671 0.84314 0.90777 0.85372 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.08 37.15 0.34 -1.65 16 2 C 0.14 1.41 3.19 -67.94 -0.22 1.19 16 3 C -0.17 -1.58 9.08 37.16 0.34 -1.25 16 4 N -0.60 -7.02 2.78 -167.46 -0.47 -7.49 16 5 C 0.10 1.01 6.45 -4.51 -0.03 0.98 16 6 C 0.10 1.15 6.52 -3.63 -0.02 1.13 16 7 N -0.62 -9.19 2.98 -175.59 -0.52 -9.72 16 8 C 0.58 11.33 7.13 -12.47 -0.09 11.24 16 9 O -0.52 -12.01 15.69 -9.88 -0.15 -12.17 16 10 C -0.23 -4.46 5.04 -104.81 -0.53 -4.98 16 11 C -0.05 -0.72 7.61 -39.20 -0.30 -1.02 16 12 C -0.21 -3.23 10.03 -39.61 -0.40 -3.63 16 13 C -0.05 -0.86 10.03 -39.53 -0.40 -1.25 16 14 C -0.22 -4.58 9.12 -39.44 -0.36 -4.94 16 15 C 0.20 4.62 6.62 -38.60 -0.26 4.36 16 16 O -0.18 -4.91 7.40 -14.36 -0.11 -5.02 16 17 C -0.40 -11.08 9.89 30.90 0.31 -10.78 16 18 H 0.11 3.04 5.55 -52.48 -0.29 2.75 16 19 C 0.07 2.01 5.49 -17.51 -0.10 1.91 16 20 N -0.87 -24.87 13.96 55.48 0.77 -24.09 16 21 Si 0.90 22.64 28.62 -169.99 -4.86 17.78 16 22 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.25 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.10 1.25 4.90 -5.20 -0.03 1.22 16 26 C 0.51 6.98 6.97 -11.91 -0.08 6.90 16 27 O -0.54 -8.39 12.49 5.57 0.07 -8.32 16 28 H 0.09 1.22 5.76 -51.93 -0.30 0.92 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.69 7.73 -51.93 -0.40 0.28 16 32 H 0.08 0.95 6.07 -51.93 -0.32 0.63 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.61 7.94 -51.93 -0.41 0.20 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.11 1.40 7.08 -51.93 -0.37 1.04 16 39 H 0.12 1.47 6.52 -52.49 -0.34 1.12 16 40 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 41 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.14 2.98 5.73 -52.49 -0.30 2.68 16 43 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.13 1.83 5.63 -51.93 -0.29 1.53 16 45 H 0.10 0.99 7.75 -51.93 -0.40 0.59 16 LS Contribution 361.44 15.07 5.45 5.45 Total: -1.00 -33.25 361.44 -7.59 -40.83 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.94 Total: 3.32 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -1.82 Total: -0.57 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: -0.22 Total: -41.30 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.19 Total: -25.51 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.86 Total: 17.78 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.25 -7.59 -40.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272765483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.488 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds