Wall clock time and date at job start Tue Mar 31 2020 17:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47137 * 2 1 4 4 N 1.46498 * 109.47429 * 120.00058 * 2 1 3 5 5 C 1.45655 * 117.70748 * 119.99823 * 4 2 1 6 6 C 1.52985 * 110.77501 * 158.10313 * 5 4 2 7 7 N 1.47270 * 108.18900 * 46.72087 * 6 5 4 8 8 C 1.34777 * 121.34644 * 118.47637 * 7 6 5 9 9 O 1.21588 * 120.00323 * 354.27599 * 8 7 6 10 10 C 1.47537 * 119.99601 * 174.27896 * 8 7 6 11 11 C 1.39671 * 120.19772 * 318.64198 * 10 8 7 12 12 C 1.37828 * 119.91846 * 179.97438 * 11 10 8 13 13 C 1.38578 * 120.32390 * 0.02562 * 12 11 10 14 14 C 1.38024 * 120.40160 * 359.97438 * 13 12 11 15 15 C 1.38836 * 120.07326 * 0.25607 * 14 13 12 16 16 O 1.35513 * 120.16173 * 179.75002 * 15 14 13 17 17 C 1.34819 * 117.00112 * 6.41518 * 16 15 14 18 18 H 1.08004 * 119.99879 * 5.73022 * 17 16 15 19 19 C 1.38698 * 120.00028 * 185.73127 * 17 16 15 20 20 N 1.31522 * 119.99807 * 179.97438 * 19 17 16 21 21 Si 1.86792 * 120.00024 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47620 * 89.99947 * 21 19 17 23 23 H 1.48506 * 109.47089 * 210.00115 * 21 19 17 24 24 H 1.48506 * 109.47269 * 329.99529 * 21 19 17 25 25 C 1.47046 * 117.29732 * 298.75106 * 7 6 5 26 26 C 1.33383 * 117.70303 * 299.97959 * 4 2 1 27 27 O 1.21270 * 118.49045 * 4.31344 * 26 4 2 28 28 H 1.09000 * 109.46747 * 299.99999 * 1 2 3 29 29 H 1.08995 * 109.47163 * 59.99723 * 1 2 3 30 30 H 1.08998 * 109.47385 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47250 * 239.99933 * 2 1 3 32 32 H 1.09000 * 109.47301 * 60.00341 * 3 2 1 33 33 H 1.09005 * 109.46904 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47114 * 299.99670 * 3 2 1 35 35 H 1.08998 * 109.21486 * 37.76631 * 5 4 2 36 36 H 1.09000 * 109.18070 * 278.41493 * 5 4 2 37 37 H 1.09001 * 109.71684 * 287.05252 * 6 5 4 38 38 H 1.09000 * 109.72224 * 166.40436 * 6 5 4 39 39 H 1.08002 * 120.03892 * 359.94954 * 11 10 8 40 40 H 1.07997 * 119.83413 * 179.97438 * 12 11 10 41 41 H 1.08002 * 119.79613 * 180.02562 * 13 12 11 42 42 H 1.07997 * 119.96220 * 179.97438 * 14 13 12 43 43 H 0.97002 * 119.99832 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.57157 * 162.30664 * 25 7 6 45 45 H 1.08999 * 109.56383 * 282.66455 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8520 -1.8695 1.0045 6 6 3.6989 -2.1433 2.2488 7 7 2.8250 -2.0467 3.4302 8 6 2.6261 -3.1030 4.2433 9 8 3.0880 -4.1895 3.9527 10 6 1.8477 -2.9408 5.4861 11 6 2.0246 -1.8075 6.2830 12 6 1.2940 -1.6616 7.4426 13 6 0.3839 -2.6348 7.8232 14 6 0.1984 -3.7600 7.0458 15 6 0.9290 -3.9262 5.8769 16 8 0.7521 -5.0327 5.1149 17 6 -0.2412 -5.8706 5.4738 18 1 -0.9115 -5.6011 6.2766 19 6 -0.4023 -7.0789 4.8120 20 7 -1.3711 -7.8965 5.1625 21 14 0.7573 -7.5454 3.4240 22 1 1.9185 -8.2875 3.9773 23 1 0.0404 -8.4047 2.4477 24 1 1.2349 -6.3150 2.7432 25 6 2.1733 -0.7530 3.6830 26 6 1.6687 -0.1954 2.3842 27 8 0.9052 0.7462 2.4165 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.5101 -1.7086 0.1507 36 1 2.2140 -2.7312 0.8081 37 1 4.4969 -1.4042 2.3203 38 1 4.1277 -3.1436 2.1891 39 1 2.7333 -1.0466 5.9911 40 1 1.4322 -0.7849 8.0580 41 1 -0.1844 -2.5115 8.7334 42 1 -0.5124 -4.5142 7.3493 43 1 -1.4840 -8.7414 4.6995 44 1 1.3379 -0.8929 4.3690 45 1 2.8936 -0.0605 4.1185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272765483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:43 Heat of formation + Delta-G solvation = -68.061106 kcal Electronic energy + Delta-G solvation = -29670.702976 eV Core-core repulsion = 25654.035281 eV Total energy + Delta-G solvation = -4016.667696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.17061 -41.22140 -39.97079 -38.24568 -37.48237 -36.76116 -34.55117 -33.61565 -32.10719 -30.87561 -30.80853 -28.23213 -28.08849 -27.33286 -25.56307 -24.36115 -23.05900 -22.62093 -21.37326 -19.94663 -19.86279 -18.73371 -18.47939 -18.09925 -17.15638 -16.94923 -16.78214 -16.58866 -16.28517 -15.80351 -15.63843 -15.57349 -15.44794 -14.91967 -14.82622 -14.66129 -14.35720 -14.25988 -14.09794 -13.85003 -13.67904 -13.40492 -13.18328 -13.03123 -12.83472 -12.76384 -12.64095 -12.46492 -12.42040 -12.18036 -12.10095 -12.00170 -11.59674 -11.07227 -10.99855 -10.71480 -9.92692 -9.84280 -9.67803 -9.18915 -8.60024 -6.30252 0.08819 0.60528 1.20976 1.27533 1.43878 1.48126 1.61135 1.73916 2.07932 2.22589 2.69751 2.97087 3.04380 3.32011 3.47608 3.75188 3.93776 4.01517 4.03939 4.16834 4.19892 4.23149 4.26887 4.35377 4.41609 4.48158 4.51941 4.62590 4.73403 4.76924 4.78513 4.82906 4.88075 4.96882 5.02650 5.19134 5.27202 5.34915 5.37550 5.44606 5.57886 5.62358 5.65675 5.81058 6.11250 6.13021 6.36790 6.75632 7.01827 7.10817 7.51880 8.50923 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011453 B = 0.004516 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.080845 B = 6199.199463 C = 7357.400996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.131 3.869 3 C -0.159 4.159 4 N -0.597 5.597 5 C 0.100 3.900 6 C 0.096 3.904 7 N -0.615 5.615 8 C 0.575 3.425 9 O -0.566 6.566 10 C -0.231 4.231 11 C -0.037 4.037 12 C -0.183 4.183 13 C -0.045 4.045 14 C -0.245 4.245 15 C 0.160 3.840 16 O -0.225 6.225 17 C -0.401 4.401 18 H 0.090 0.910 19 C 0.025 3.975 20 N -0.911 5.911 21 Si 0.959 3.041 22 H -0.272 1.272 23 H -0.262 1.262 24 H -0.274 1.274 25 C 0.096 3.904 26 C 0.507 3.493 27 O -0.563 6.563 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.036 0.964 31 H 0.111 0.889 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.130 0.870 36 H 0.048 0.952 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.164 0.836 40 H 0.168 0.832 41 H 0.151 0.849 42 H 0.115 0.885 43 H 0.286 0.714 44 H 0.114 0.886 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.119 20.129 -7.586 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.029 3.971 3 C -0.217 4.217 4 N -0.329 5.329 5 C -0.024 4.024 6 C -0.026 4.026 7 N -0.351 5.351 8 C 0.366 3.634 9 O -0.444 6.444 10 C -0.235 4.235 11 C -0.055 4.055 12 C -0.201 4.201 13 C -0.063 4.063 14 C -0.264 4.264 15 C 0.108 3.892 16 O -0.130 6.130 17 C -0.477 4.477 18 H 0.108 0.892 19 C -0.176 4.176 20 N -0.551 5.551 21 Si 0.783 3.217 22 H -0.198 1.198 23 H -0.186 1.186 24 H -0.199 1.199 25 C -0.029 4.029 26 C 0.295 3.705 27 O -0.443 6.443 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.129 0.871 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.148 0.852 36 H 0.066 0.934 37 H 0.135 0.865 38 H 0.116 0.884 39 H 0.181 0.819 40 H 0.185 0.815 41 H 0.169 0.831 42 H 0.133 0.867 43 H 0.096 0.904 44 H 0.132 0.868 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.987 19.702 -7.971 23.925 hybrid contribution -0.372 -1.238 -0.213 1.310 sum 10.615 18.464 -8.184 22.816 Atomic orbital electron populations 1.22225 0.95932 1.01210 1.03535 1.21329 0.94226 0.94387 0.87134 1.22099 1.01343 0.94991 1.03239 1.47517 1.50445 1.28671 1.06270 1.21943 0.94040 0.86555 0.99826 1.22156 0.92719 1.05406 0.82284 1.48043 1.48465 1.10911 1.27666 1.18301 0.78725 0.82926 0.83405 1.90763 1.51700 1.26686 1.75298 1.19143 1.05664 0.98455 1.00239 1.21391 0.97429 0.93395 0.93267 1.21249 0.99085 1.01395 0.98420 1.21445 0.95672 0.91173 0.98027 1.21330 1.05556 1.02411 0.97122 1.19638 0.93342 0.86215 0.90042 1.83635 1.49645 1.29982 1.49740 1.20810 1.06653 0.99493 1.20766 0.89218 1.25068 0.98084 0.94207 1.00214 1.69684 1.31809 1.11021 1.42579 0.85382 0.78587 0.78497 0.79269 1.19783 1.18618 1.19859 1.22199 1.00523 0.84808 0.95386 1.20365 0.80715 0.83265 0.86126 1.90652 1.35846 1.30277 1.87511 0.92201 0.90011 0.94439 0.87076 0.92665 0.91577 0.90263 0.85169 0.93372 0.86549 0.88433 0.81878 0.81495 0.83111 0.86698 0.90384 0.86799 0.84129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.76 9.08 71.98 0.65 -3.10 16 2 C 0.13 2.34 3.19 44.99 0.14 2.49 16 3 C -0.16 -2.50 9.08 71.98 0.65 -1.85 16 4 N -0.60 -12.54 2.78 -802.88 -2.24 -14.77 16 5 C 0.10 1.81 6.45 86.53 0.56 2.36 16 6 C 0.10 1.95 6.52 86.23 0.56 2.51 16 7 N -0.62 -16.90 2.98 -827.71 -2.47 -19.37 16 8 C 0.58 22.33 7.13 86.70 0.62 22.94 16 9 O -0.57 -27.21 15.69 10.51 0.16 -27.05 16 10 C -0.23 -8.95 5.04 -19.98 -0.10 -9.05 16 11 C -0.04 -1.00 7.61 22.52 0.17 -0.83 16 12 C -0.18 -4.56 10.03 22.25 0.22 -4.33 16 13 C -0.05 -1.38 10.03 22.30 0.22 -1.16 16 14 C -0.24 -10.39 9.12 22.36 0.20 -10.19 16 15 C 0.16 7.65 6.62 22.91 0.15 7.80 16 16 O -0.22 -12.90 7.40 -5.53 -0.04 -12.94 16 17 C -0.40 -24.28 9.89 67.93 0.67 -23.61 16 18 H 0.09 5.53 5.55 -2.91 -0.02 5.51 16 19 C 0.02 1.47 5.49 84.85 0.47 1.93 16 20 N -0.91 -55.25 13.96 21.62 0.30 -54.95 16 21 Si 0.96 49.60 28.62 68.60 1.96 51.57 16 22 H -0.27 -13.90 7.11 99.48 0.71 -13.20 16 23 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.27 -14.98 7.11 99.48 0.71 -14.27 16 25 C 0.10 2.16 4.90 85.33 0.42 2.58 16 26 C 0.51 12.67 6.97 87.68 0.61 13.28 16 27 O -0.56 -16.73 12.49 -3.00 -0.04 -16.76 16 28 H 0.06 1.67 5.76 -2.39 -0.01 1.65 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.11 1.39 7.73 -2.39 -0.02 1.37 16 32 H 0.05 1.18 6.07 -2.39 -0.01 1.17 16 33 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.13 1.27 7.94 -2.39 -0.02 1.25 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 2.35 7.08 -2.39 -0.02 2.33 16 39 H 0.16 3.01 6.52 -2.91 -0.02 3.00 16 40 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 41 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 42 H 0.12 5.36 5.73 -2.91 -0.02 5.34 16 43 H 0.29 15.95 8.31 -92.71 -0.77 15.18 16 44 H 0.11 2.95 5.63 -2.39 -0.01 2.93 16 45 H 0.14 2.03 7.75 -2.39 -0.02 2.02 16 Total: -1.00 -81.93 361.44 4.90 -77.03 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 1.02 Total: 15.45 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 6.23 Total: 1.79 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -4.40 Total: -89.08 kcal Atomic # 8 Polarization: -56.84 SS G_CDS: 0.09 Total: -56.76 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 1.96 Total: 51.57 kcal Total: -81.93 4.90 -77.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272765483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.972 kcal (2) G-P(sol) polarization free energy of solvation -81.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds