Wall clock time and date at job start Tue Mar 31 2020 17:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50696 * 120.00038 * 2 1 4 4 C 1.50695 * 120.00129 * 180.02562 * 2 1 3 5 5 O 1.42902 * 109.47394 * 359.97438 * 4 2 1 6 6 C 1.35897 * 117.00574 * 180.02562 * 5 4 2 7 7 C 1.38819 * 120.01250 * 359.72343 * 6 5 4 8 8 C 1.38185 * 120.09501 * 179.70377 * 7 6 5 9 9 C 1.38158 * 120.12667 * 0.59324 * 8 7 6 10 10 C 1.38945 * 120.03485 * 359.68265 * 9 8 7 11 11 N 1.39712 * 120.05000 * 180.02562 * 10 9 8 12 12 C 1.34774 * 120.00065 * 213.34570 * 11 10 9 13 13 O 1.21380 * 120.00051 * 5.26937 * 12 11 10 14 14 C 1.49355 * 120.00246 * 185.27507 * 12 11 10 15 15 O 1.21366 * 119.99694 * 359.97438 * 14 12 11 16 16 N 1.34770 * 120.00565 * 179.97438 * 14 12 11 17 17 C 1.46500 * 120.00699 * 179.97438 * 16 14 12 18 18 C 1.52992 * 109.47372 * 179.97438 * 17 16 14 19 19 C 1.50701 * 109.47107 * 180.02562 * 18 17 16 20 20 H 1.08005 * 120.00270 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00157 * 180.02562 * 19 18 17 22 22 N 1.31519 * 120.00208 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99840 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47585 * 90.00312 * 23 21 19 25 25 H 1.48510 * 109.46806 * 210.00055 * 23 21 19 26 26 H 1.48498 * 109.47213 * 329.99828 * 23 21 19 27 27 C 1.38564 * 120.02212 * 179.97438 * 6 5 4 28 28 H 1.08001 * 120.00059 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.99983 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47421 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47441 * 300.00986 * 3 2 1 32 32 H 1.09007 * 109.46696 * 60.00523 * 3 2 1 33 33 H 1.09003 * 109.47668 * 119.99548 * 4 2 1 34 34 H 1.09004 * 109.47265 * 239.99543 * 4 2 1 35 35 H 1.07998 * 119.95629 * 359.97438 * 7 6 5 36 36 H 1.07993 * 119.93910 * 180.29725 * 8 7 6 37 37 H 1.07996 * 119.97911 * 179.70683 * 9 8 7 38 38 H 0.97008 * 119.99926 * 33.33538 * 11 10 9 39 39 H 0.97005 * 119.99452 * 359.97438 * 16 14 12 40 40 H 1.08997 * 109.46802 * 300.00352 * 17 16 14 41 41 H 1.09002 * 109.46648 * 59.99926 * 17 16 14 42 42 H 1.08997 * 109.47730 * 300.00134 * 18 17 16 43 43 H 1.09002 * 109.47009 * 60.00497 * 18 17 16 44 44 H 0.96999 * 119.99954 * 180.02562 * 22 21 19 45 45 H 1.07999 * 120.06134 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 -0.0006 5 8 1.1349 -2.3913 -0.0005 6 6 1.6543 -3.6471 -0.0004 7 6 3.0305 -3.8293 -0.0063 8 6 3.5605 -5.1055 0.0000 9 6 2.7229 -6.2042 -0.0003 10 6 1.3446 -6.0280 -0.0002 11 7 0.4973 -7.1389 0.0000 12 6 -0.6867 -7.0835 -0.6415 13 8 -0.9755 -6.1048 -1.2989 14 6 -1.6434 -8.2262 -0.5434 15 8 -1.3544 -9.2048 0.1136 16 7 -2.8276 -8.1706 -1.1844 17 6 -3.7658 -9.2917 -1.0887 18 6 -5.0228 -8.9756 -1.9016 19 6 -5.9881 -10.1286 -1.8026 20 1 -5.7307 -10.9999 -1.2186 21 6 -7.1997 -10.0716 -2.4583 22 7 -8.0419 -11.0781 -2.3723 23 14 -7.6442 -8.5656 -3.4700 24 1 -7.1783 -8.7528 -4.8676 25 1 -9.1176 -8.3799 -3.4601 26 1 -6.9902 -7.3667 -2.8867 27 6 0.8106 -4.7463 0.0002 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 3.1351 1.1059 -0.0005 31 1 1.8000 1.8768 -0.8899 32 1 1.8001 1.8766 0.8901 33 1 2.6901 -1.3625 -0.8906 34 1 2.6902 -1.3632 0.8894 35 1 3.6879 -2.9725 -0.0113 36 1 4.6314 -5.2443 0.0002 37 1 3.1397 -7.2005 -0.0002 38 1 0.7613 -7.9501 0.4618 39 1 -3.0587 -7.3882 -1.7093 40 1 -3.2958 -10.1933 -1.4815 41 1 -4.0384 -9.4491 -0.0452 42 1 -5.4927 -8.0741 -1.5084 43 1 -4.7505 -8.8179 -2.9452 44 1 -8.8941 -11.0381 -2.8339 45 1 -0.2603 -4.6063 0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273059928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:18 Heat of formation + Delta-G solvation = -62.964719 kcal Electronic energy + Delta-G solvation = -26684.207790 eV Core-core repulsion = 22667.761090 eV Total energy + Delta-G solvation = -4016.446700 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -41.21872 -40.25811 -38.89136 -37.78600 -35.82144 -35.38137 -34.55791 -32.84061 -30.88649 -30.34210 -29.75796 -27.68672 -27.30896 -26.09604 -24.22549 -23.00633 -22.04003 -20.93548 -20.33782 -19.15045 -18.91071 -18.16297 -17.11384 -16.73045 -16.44895 -16.35704 -16.31049 -15.90278 -15.83837 -15.07004 -14.75267 -14.39287 -14.20121 -14.02366 -13.92655 -13.87773 -13.67988 -13.28417 -13.15344 -12.93587 -12.63518 -12.29169 -12.13606 -11.80849 -11.76171 -11.56391 -11.52929 -11.28096 -11.24448 -10.60449 -10.47378 -10.33872 -9.97968 -9.56477 -9.44630 -9.35920 -8.85787 -8.73050 -8.63289 -8.40133 -6.13963 -4.14949 0.76645 1.12279 1.53141 1.79739 2.22776 2.75327 3.15770 3.25624 3.33792 3.35442 3.50462 3.65940 4.26078 4.36350 4.50248 4.51260 4.64529 4.67600 4.78462 4.80014 4.85943 4.97147 5.05240 5.18691 5.19078 5.19275 5.41993 5.47124 5.61746 5.84926 5.90698 5.92002 6.01827 6.06034 6.11061 6.19777 6.31473 6.40103 6.44661 6.50374 6.81117 7.02814 7.10807 7.15269 7.41893 7.59465 7.69195 8.08637 8.39503 8.89027 9.45829 10.98675 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013156 B = 0.002138 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.822532 B =13095.155394 C =15000.771696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.151 4.151 3 C -0.112 4.112 4 C 0.097 3.903 5 O -0.309 6.309 6 C 0.151 3.849 7 C -0.225 4.225 8 C -0.059 4.059 9 C -0.179 4.179 10 C 0.187 3.813 11 N -0.648 5.648 12 C 0.508 3.492 13 O -0.494 6.494 14 C 0.502 3.498 15 O -0.525 6.525 16 N -0.687 5.687 17 C 0.127 3.873 18 C -0.024 4.024 19 C -0.525 4.525 20 H 0.077 0.923 21 C 0.071 3.929 22 N -0.897 5.897 23 Si 0.881 3.119 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.265 1.265 27 C -0.155 4.155 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.426 0.574 39 H 0.410 0.590 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.025 0.975 43 H 0.021 0.979 44 H 0.265 0.735 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.362 21.072 5.843 34.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.168 4.168 4 C 0.023 3.977 5 O -0.222 6.222 6 C 0.105 3.895 7 C -0.244 4.244 8 C -0.078 4.078 9 C -0.199 4.199 10 C 0.093 3.907 11 N -0.296 5.296 12 C 0.291 3.709 13 O -0.367 6.367 14 C 0.281 3.719 15 O -0.402 6.402 16 N -0.338 5.338 17 C 0.005 3.995 18 C -0.062 4.062 19 C -0.563 4.563 20 H 0.095 0.905 21 C -0.132 4.132 22 N -0.535 5.535 23 Si 0.708 3.292 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.189 1.189 27 C -0.176 4.176 28 H 0.118 0.882 29 H 0.130 0.870 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.264 0.736 39 H 0.245 0.755 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.043 0.957 43 H 0.039 0.961 44 H 0.075 0.925 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 25.861 21.012 5.773 33.817 hybrid contribution -0.142 0.671 -0.639 0.938 sum 25.718 21.683 5.134 34.029 Atomic orbital electron populations 1.23802 0.95461 1.02727 0.98193 1.21509 0.95941 0.93772 1.03894 1.20725 0.99829 0.93706 1.02583 1.21550 0.90995 0.83518 1.01674 1.86042 1.35702 1.11994 1.88494 1.18641 0.91462 0.84145 0.95257 1.21230 0.93632 0.98728 1.10825 1.20699 0.99596 0.91172 0.96347 1.20844 0.91013 0.99999 1.08047 1.17345 0.89341 0.86070 0.97990 1.43190 1.17538 1.16063 1.52772 1.20670 0.82569 0.88352 0.79335 1.90801 1.75222 1.33072 1.37609 1.19697 0.83435 0.86928 0.81875 1.90772 1.76237 1.32718 1.40469 1.46217 1.16241 1.22745 1.48627 1.21760 0.89010 0.86813 1.01891 1.19831 0.92396 0.98765 0.95184 1.20862 1.00383 1.02710 1.32358 0.90516 1.24986 0.96065 0.96125 0.96000 1.69898 1.09272 1.31036 1.43248 0.86770 0.77724 0.83827 0.80909 1.20147 1.21206 1.18943 1.20290 1.01126 0.88810 1.07372 0.88159 0.87033 0.91906 0.91123 0.91138 0.90922 0.90945 0.85385 0.85144 0.85134 0.73556 0.75454 0.91086 0.91066 0.95664 0.96110 0.92480 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 13.71 29.02 0.40 -0.97 16 2 C -0.15 -1.11 6.05 -101.07 -0.61 -1.72 16 3 C -0.11 -0.53 10.05 36.00 0.36 -0.17 16 4 C 0.10 0.73 5.07 36.00 0.18 0.91 16 5 O -0.31 -3.34 8.53 -19.42 -0.17 -3.50 16 6 C 0.15 1.66 6.68 -39.25 -0.26 1.39 16 7 C -0.22 -1.91 9.04 -39.39 -0.36 -2.27 16 8 C -0.06 -0.46 10.03 -39.63 -0.40 -0.86 16 9 C -0.18 -1.57 9.96 -39.35 -0.39 -1.97 16 10 C 0.19 2.11 6.27 -83.78 -0.53 1.58 16 11 N -0.65 -7.45 5.32 -10.31 -0.05 -7.51 16 12 C 0.51 7.19 7.62 -11.63 -0.09 7.10 16 13 O -0.49 -7.84 14.16 5.47 0.08 -7.76 16 14 C 0.50 7.99 7.89 -11.63 -0.09 7.90 16 15 O -0.52 -9.28 16.48 5.48 0.09 -9.19 16 16 N -0.69 -11.46 5.55 -60.77 -0.34 -11.80 16 17 C 0.13 2.47 5.61 -4.05 -0.02 2.45 16 18 C -0.02 -0.54 4.16 -27.89 -0.12 -0.66 16 19 C -0.52 -14.44 9.66 -34.44 -0.33 -14.77 16 20 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 21 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 22 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 23 Si 0.88 21.04 27.47 -169.99 -4.67 16.38 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 27 C -0.16 -1.94 8.59 -39.23 -0.34 -2.28 16 28 H 0.10 0.67 8.05 -52.49 -0.42 0.25 16 29 H 0.11 1.10 6.84 -52.49 -0.36 0.75 16 30 H 0.06 0.23 8.00 -51.93 -0.42 -0.19 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.46 7.65 -51.93 -0.40 0.06 16 34 H 0.07 0.44 7.67 -51.93 -0.40 0.04 16 35 H 0.13 0.78 6.29 -52.49 -0.33 0.45 16 36 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.43 4.08 8.30 -40.82 -0.34 3.74 16 39 H 0.41 6.32 7.94 -40.82 -0.32 6.00 16 40 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.03 0.56 7.20 -51.93 -0.37 0.19 16 43 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.14 2.03 6.42 -52.49 -0.34 1.69 16 LS Contribution 385.00 15.07 5.80 5.80 Total: -1.00 -32.55 385.00 -7.38 -39.94 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.21 Total: 6.29 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -2.69 Total: -2.40 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.38 Total: -45.54 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.00 Total: -20.46 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.55 -7.38 -39.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273059928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.029 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds